Basic Information
Locus ID:
Ag1G00053
Species & Taxonomic ID:
Apium graveolens & 4045
Genome Assembly:
GCA_009905375.1
Description:
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr1 | 3926047 | 3937224 | + | Ag1G00053 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.11 | 101,288.96 Da | 40.91 | 72.51 | -0.62 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00628 | PHD-finger | 138 | 174 | 2.4E-7 | IPR019787 |
| Pfam | PF13639 | Ring finger domain | 23 | 63 | 6.6E-7 | IPR001841 |
| SUPERFAMILY | SSF57850 | RING/U-box | 7 | 69 | 1.94E-13 | - |
| SUPERFAMILY | SSF57903 | FYVE/PHD zinc finger | 137 | 177 | 6.2E-10 | IPR011011 |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 118 | 182 | 1.3E-8 | IPR013083 |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 5 | 90 | 7.9E-12 | IPR013083 |
| SMART | SM00184 | ring_2 | 24 | 62 | 2.7E-5 | IPR001841 |
| SMART | SM00249 | PHD_3 | 122 | 174 | 5.7E-4 | IPR001965 |
| ProSiteProfiles | PS50016 | Zinc finger PHD-type profile. | 56 | 176 | 8.5822 | IPR019787 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 24 | 63 | 11.427062 | IPR001841 |
| ProSitePatterns | PS00518 | Zinc finger RING-type signature. | 40 | 49 | - | IPR017907 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 396 | 460 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 730 | 752 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 442 | 456 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 727 | 752 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 396 | 432 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 293 | 312 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 775 | 813 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 784 | 807 | - | - |
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT4G10930.1 | 0 | |
| RefSeq | XP_017226583.1 | PREDICTED: uncharacterized protein At4g10930-like isoform X1 [Daucus carota subsp. sativus] | 0 |
| Q8L7I1 | Uncharacterized protein At4g10930 OS=Arabidopsis thaliana OX=3702 GN=At4g10930 PE=2 SV=1 | 0 | |
| TrEMBL | A0A175YGF3 | CaM_binding domain-containing protein OS=Daucus carota subsp. sativus OX=79200 GN=DCAR_029909 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| PRJNA723697 | SRX10692252 | 18.861803 | Shengqin NO.2 | seed | S1-1 | S1-1 | initial formation stage (S1) |
| PRJNA723697 | SRX10692254 | 15.826776 | Shengqin NO.2 | seed | S1-3 | S1-3 | initial formation stage (S1) |
| PRJNA723697 | SRX10692255 | 13.61276 | Shengqin NO.2 | seed | S3-1 | S3-1 | middle development stage (S3) |
| PRJNA723697 | SRX10692256 | 15.285652 | Shengqin NO.2 | seed | S3-2 | S3-2 | middle development stage (S3) |
| PRJNA723697 | SRX10692257 | 13.709841 | Shengqin NO.2 | seed | S3-3 | S3-3 | middle development stage (S3) |
| PRJNA723697 | SRX10692258 | 15.064466 | Shengqin NO.2 | seed | S5-1 | S5-1 | maturation stage (S5) |
| PRJNA723697 | SRX10692259 | 15.460282 | Shengqin NO.2 | seed | S5-2 | S5-2 | maturation stage (S5) |
| PRJNA723697 | SRX10692260 | 14.821963 | Shengqin NO.2 | seed | S5-3 | S5-3 | maturation stage (S5) |
| PRJNA884666 | SRX17729272 | 16.504282 | celery | anther | W99A-r1 | male sterile line | |
| PRJNA884666 | SRX17729273 | 17.127802 | celery | anther | W99A-r2 | male sterile line | |
| PRJNA884666 | SRX17729274 | 18.026388 | celery | anther | W99A-r3 | male sterile line | |
| PRJNA884666 | SRX17729275 | 17.448679 | celery | anther | W99B-r1 | maintainer line | |
| PRJNA884666 | SRX17729276 | 18.075481 | celery | anther | W99B-r2 | maintainer line | |
| PRJNA884666 | SRX17729277 | 14.27471 | celery | anther | W99B-r3 | maintainer line | |
| PRJNA884180 | SRX17743889 | 7.86577 | var. secalinum Yablochny | collenchyma | Col_S1_rep1-1 | ||
| PRJNA884180 | SRX17748056 | 7.375809 | var. secalinum Yablochny | collenchyma | Col_S1_rep3 | biological replicate 3 | |
| PRJNA884180 | SRX17748057 | 8.248177 | var. secalinum Yablochny | collenchyma | Col_S1_rep4 | biological replicate 4 | |
| PRJNA884180 | SRX17748678 | 11.654915 | var. secalinum Yablochny | parenchyma | Par_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17748679 | 8.334387 | var. secalinum Yablochny | parenchyma | Par_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17748680 | 9.953088 | var. secalinum Yablochny | parenchyma | Par_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17748681 | 11.901865 | var. secalinum Yablochny | parenchyma | Par_S1_rep4 | Biological replicate 4 | |
| PRJNA884180 | SRX17748898 | 8.40433 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17748899 | 8.976799 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17748900 | 8.663289 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17748901 | 8.821383 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep4 | Biological replicate 4 | |
| PRJNA884180 | SRX17749129 | 12.1189 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17749130 | 8.732372 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17749131 | 11.249075 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17749132 | 11.795939 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep4 | Biological replicate 4 | |
| PRJNA1124269 | SRX24936411 | 2.35789 | leaf | CK1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936412 | 4.92968 | leaf | CK2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936413 | 2.879575 | leaf | CK3 | replicate=biological replicate3 | ||
| PRJNA1124269 | SRX24936414 | 4.598861 | leaf | D1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936415 | 3.514929 | leaf | D2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936416 | 4.274428 | leaf | D3 | replicate=biological replicate3 | ||
| PRJNA1124269 | SRX24936417 | 3.364118 | leaf | MD1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936418 | 1.5627 | leaf | MD2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936419 | 1.901878 | leaf | MD3 | replicate=biological replicate3 | ||
| PRJNA387092 | SRX2833309 | 9.802921 | shanghaihuangxin | leaf | leaves between 0.5 and 1 cm in breadth, folded; | stage 2 | |
| PRJNA387092 | SRX2833321 | 7.355756 | shanghaihuangxin | leaf | leaves between 2and 2.5 cm in breadth, nearly unfolded, with clear stem exten-sion | stage 5 | |
| PRJNA387092 | SRX2833323 | 4.643801 | shanghaihuangxin | leaf | leaves >3 cm, unfolded, with clearstem extension | stage 7 | |
| PRJNA543957 | SRX5879598 | 12.293789 | Zhangzhou lvqing | stem | Se3 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879599 | 11.49442 | Zhangzhou lvqing | stem | Se2 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879600 | 17.140783 | Zhangzhou lvqing | stem | Mock2 | mock | |
| PRJNA543957 | SRX5879601 | 15.975513 | Zhangzhou lvqing | stem | Mock1 | mock | |
| PRJNA543957 | SRX5879602 | 11.57559 | Zhangzhou lvqing | stem | Se1 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879603 | 17.719259 | Zhangzhou lvqing | stem | Mock3 | mock | |
| PRJNA609149 | SRX7815917 | 9.845386 | Jinnan Shiqin | flower bud | early flower bud | early flower bud | |
| PRJNA609149 | SRX7815918 | 9.980567 | Jinnan Shiqin | flower bud | middle flower bud | middle flower bud | |
| PRJNA609149 | SRX7815919 | 10.631265 | Jinnan Shiqin | flower bud | early flowering period | early flowering period |
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Acanthaceae | Avicennia marina | 1 | jg4716 |
| Aizoaceae | Mesembryanthemum crystallinum | 1 | gene_15158 |
| Amaranthaceae | Atriplex hortensis | 1 | Ah003895 |
| Amaranthaceae | Beta vulgaris | 1 | BVRB_5g098620 |
| Amaranthaceae | Salicornia bigelovii | 2 | Sbi_jg24060, Sbi_jg7903 |
| Amaranthaceae | Salicornia europaea | 1 | Seu_jg12138 |
| Amaranthaceae | Suaeda aralocaspica | 2 | GOSA_00010665, GOSA_00010666 |
| Amaranthaceae | Suaeda glauca | 2 | Sgl52250, Sgl57503 |
| Amaranthaceae | Chenopodium album | 4 | gene:ENSEOMG00000005683, gene:ENSEOMG00000021196 ... |
| Amaranthaceae | Chenopodium quinoa | 2 | CQ.Regalona.r1.5AG0005670, CQ.Regalona.r1.5BG0005960 |
| Apiaceae | Apium graveolens | 1 | Ag1G00053 |
| Arecaceae | Cocos nucifera | 1 | COCNU_06G005090 |
| Arecaceae | Phoenix dactylifera | 1 | gene-LOC103714205 |
| Asparagaceae | Asparagus officinalis | 1 | AsparagusV1_05.1987.V1.1 |
| Asteraceae | Flaveria trinervia | 1 | Ftri2G26481 |
| Brassicaceae | Arabidopsis thaliana | 2 | AT4G10930.1, AT4G10940.1 |
| Brassicaceae | Eutrema salsugineum | 1 | Thhalv10028398m.g.v1.0 |
| Brassicaceae | Schrenkiella parvula | 1 | Sp6g06550.v2.2 |
| Brassicaceae | Brassica nigra | 3 | BniB03g059210.2N, BniB07g004840.2N, BniB08g036190.2N |
| Casuarinaceae | Casuarina equisetifolia | 1 | Ceq03G0546 |
| Casuarinaceae | Casuarina glauca | 1 | Cgl03G0655 |
| Cymodoceaceae | Cymodocea nodosa | 1 | gene.Cymno16g03990 |
| Dunaliellaceae | Dunaliella salina | 1 | Dusal.0328s00002.v1.0 |
| Hydrocharitaceae | Thalassia testudinum | 1 | gene.Thate01g03930 |
| Nitrariaceae | Nitraria sibirica | 1 | evm.TU.LG10.1554 |
| Plantaginaceae | Plantago ovata | 1 | Pov_00005397 |
| Plumbaginaceae | Limonium bicolor | 2 | Lb4G24673, Lb4G24684 |
| Poaceae | Echinochloa crus-galli | 3 | AH02.3003, BH02.3086, CH02.3436 |
| Poaceae | Eleusine coracana subsp. coracana | 1 | gene-QOZ80_1BG0081350 |
| Poaceae | Hordeum vulgare | 1 | HORVU.MOREX.r3.3HG0285480.1 |
| Poaceae | Lolium multiflorum | 2 | gene-QYE76_015041, gene-QYE76_015042 |
| Poaceae | Oryza coarctata | 2 | Oco02G019400, Oco23G003700 |
| Poaceae | Oryza sativa | 1 | LOC_Os12g10700.1 |
| Poaceae | Paspalum vaginatum | 1 | gene-BS78_03G258500 |
| Poaceae | Puccinellia tenuiflora | 2 | Pt_Chr0203035, Pt_Chr0505804 |
| Poaceae | Sporobolus alterniflorus | 4 | Chr02G011090, Chr05G022590, Chr08G015170, Chr0G030780 |
| Poaceae | Thinopyrum elongatum | 1 | Tel3E01G471900 |
| Poaceae | Triticum dicoccoides | 2 | gene_TRIDC3AG042470, gene_TRIDC3BG048420 |
| Poaceae | Triticum aestivum | 3 | TraesCS3A02G287900.3, TraesCS3B02G322600.5 ... |
| Poaceae | Zea mays | 1 | Zm00001eb209080_P003 |
| Poaceae | Zoysia macrostachya | 1 | Zma_g8543 |
| Portulacaceae | Portulaca oleracea | 6 | evm.TU.LG04.3258, evm.TU.LG10.124, evm.TU.LG13.1554 ... |
| Posidoniaceae | Posidonia oceanica | 6 | gene.Posoc03g22090, gene.Posoc07g08450, gene.Posoc07g08460 ... |
| Rhizophoraceae | Bruguiera sexangula | 2 | evm.TU.Scaffold_14_RagTag.89, evm.TU.Scaffold_14_RagTag.90 |
| Rhizophoraceae | Carallia pectinifolia | 1 | nbisL1-mrna-18314 |
| Rhizophoraceae | Ceriops tagal | 1 | nbisL1-mrna-2909 |
| Rhizophoraceae | Ceriops zippeliana | 1 | nbisL1-mrna-8639 |
| Rhizophoraceae | Kandelia candel | 1 | evm.TU.utg000007l.341 |
| Rhizophoraceae | Kandelia obovata | 1 | Maker00018511 |
| Rhizophoraceae | Rhizophora apiculata | 1 | nbisL1-mrna-15960 |
| Rhizophoraceae | Rhizophora mangle | 1 | nbisL1-mrna-11005 |
| Salicaceae | Populus euphratica | 1 | populus_peu03703 |
| Solanaceae | Lycium barbarum | 1 | gene-LOC132603796 |
| Solanaceae | Solanum chilense | 1 | SOLCI005546800 |
| Solanaceae | Solanum pennellii | 1 | gene-LOC107007354 |
| Tamaricaceae | Reaumuria soongarica | 1 | gene_13855 |
| Tamaricaceae | Tamarix chinensis | 1 | TC01G3091 |
| Zosteraceae | Zostera marina | 1 | Zosma05g12420.v3.1 |