Basic Information
Locus ID:
Ag1G00048
Species & Taxonomic ID:
Apium graveolens & 4045
Genome Assembly:
GCA_009905375.1
Description:
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr1 | 3601138 | 3605950 | + | Ag1G00048 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 4.40 | 66,680.77 Da | 44.26 | 89.13 | -0.50 |
Protein Domain:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G36100.1 | 0 | |
| RefSeq | XP_017227391.1 | PREDICTED: uncharacterized protein LOC108203141 isoform X1 [Daucus carota subsp. sativus] | 0 |
| TrEMBL | A0A175YFR0 | FK506-binding protein 5-like OS=Daucus carota subsp. sativus OX=79200 GN=DCAR_029902 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| PRJNA723697 | SRX10692252 | 207.029572 | Shengqin NO.2 | seed | S1-1 | S1-1 | initial formation stage (S1) |
| PRJNA723697 | SRX10692254 | 120.957588 | Shengqin NO.2 | seed | S1-3 | S1-3 | initial formation stage (S1) |
| PRJNA723697 | SRX10692255 | 217.572983 | Shengqin NO.2 | seed | S3-1 | S3-1 | middle development stage (S3) |
| PRJNA723697 | SRX10692256 | 211.820282 | Shengqin NO.2 | seed | S3-2 | S3-2 | middle development stage (S3) |
| PRJNA723697 | SRX10692257 | 220.720978 | Shengqin NO.2 | seed | S3-3 | S3-3 | middle development stage (S3) |
| PRJNA723697 | SRX10692258 | 357.730865 | Shengqin NO.2 | seed | S5-1 | S5-1 | maturation stage (S5) |
| PRJNA723697 | SRX10692259 | 291.106476 | Shengqin NO.2 | seed | S5-2 | S5-2 | maturation stage (S5) |
| PRJNA723697 | SRX10692260 | 377.416321 | Shengqin NO.2 | seed | S5-3 | S5-3 | maturation stage (S5) |
| PRJNA884666 | SRX17729272 | 0.795853 | celery | anther | W99A-r1 | male sterile line | |
| PRJNA884666 | SRX17729273 | 0.702783 | celery | anther | W99A-r2 | male sterile line | |
| PRJNA884666 | SRX17729274 | 0.831313 | celery | anther | W99A-r3 | male sterile line | |
| PRJNA884666 | SRX17729275 | 1.149835 | celery | anther | W99B-r1 | maintainer line | |
| PRJNA884666 | SRX17729276 | 0.860514 | celery | anther | W99B-r2 | maintainer line | |
| PRJNA884666 | SRX17729277 | 0.688606 | celery | anther | W99B-r3 | maintainer line | |
| PRJNA884180 | SRX17743889 | 0.089649 | var. secalinum Yablochny | collenchyma | Col_S1_rep1-1 | ||
| PRJNA884180 | SRX17748056 | 0 | var. secalinum Yablochny | collenchyma | Col_S1_rep3 | biological replicate 3 | |
| PRJNA884180 | SRX17748057 | 0.15885 | var. secalinum Yablochny | collenchyma | Col_S1_rep4 | biological replicate 4 | |
| PRJNA884180 | SRX17748678 | 0 | var. secalinum Yablochny | parenchyma | Par_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17748679 | 0.134766 | var. secalinum Yablochny | parenchyma | Par_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17748680 | 0 | var. secalinum Yablochny | parenchyma | Par_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17748681 | 0 | var. secalinum Yablochny | parenchyma | Par_S1_rep4 | Biological replicate 4 | |
| PRJNA884180 | SRX17748898 | 0.361916 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17748899 | 0.667888 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17748900 | 0.870431 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17748901 | 0.825969 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep4 | Biological replicate 4 | |
| PRJNA884180 | SRX17749129 | 0.103929 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17749130 | 0.062374 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17749131 | 0.085752 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17749132 | 0.354521 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep4 | Biological replicate 4 | |
| PRJNA1124269 | SRX24936411 | 0 | leaf | CK1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936412 | 0.03356 | leaf | CK2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936413 | 0 | leaf | CK3 | replicate=biological replicate3 | ||
| PRJNA1124269 | SRX24936414 | 1.405997 | leaf | D1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936415 | 0.887451 | leaf | D2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936416 | 0.852003 | leaf | D3 | replicate=biological replicate3 | ||
| PRJNA1124269 | SRX24936417 | 0.670177 | leaf | MD1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936418 | 0.413588 | leaf | MD2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936419 | 0.371029 | leaf | MD3 | replicate=biological replicate3 | ||
| PRJNA387092 | SRX2833309 | 0 | shanghaihuangxin | leaf | leaves between 0.5 and 1 cm in breadth, folded; | stage 2 | |
| PRJNA387092 | SRX2833321 | 0 | shanghaihuangxin | leaf | leaves between 2and 2.5 cm in breadth, nearly unfolded, with clear stem exten-sion | stage 5 | |
| PRJNA387092 | SRX2833323 | 0 | shanghaihuangxin | leaf | leaves >3 cm, unfolded, with clearstem extension | stage 7 | |
| PRJNA543957 | SRX5879598 | 0 | Zhangzhou lvqing | stem | Se3 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879599 | 0 | Zhangzhou lvqing | stem | Se2 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879600 | 0.206695 | Zhangzhou lvqing | stem | Mock2 | mock | |
| PRJNA543957 | SRX5879601 | 0.112202 | Zhangzhou lvqing | stem | Mock1 | mock | |
| PRJNA543957 | SRX5879602 | 0.035631 | Zhangzhou lvqing | stem | Se1 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879603 | 0.606051 | Zhangzhou lvqing | stem | Mock3 | mock | |
| PRJNA609149 | SRX7815917 | 1.000424 | Jinnan Shiqin | flower bud | early flower bud | early flower bud | |
| PRJNA609149 | SRX7815918 | 2.294136 | Jinnan Shiqin | flower bud | middle flower bud | middle flower bud | |
| PRJNA609149 | SRX7815919 | 0.699233 | Jinnan Shiqin | flower bud | early flowering period | early flowering period |
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Aizoaceae | Mesembryanthemum crystallinum | 1 | gene_11801 |
| Amaranthaceae | Atriplex hortensis | 1 | Ah005275 |
| Amaranthaceae | Beta vulgaris | 1 | BVRB_4g080940 |
| Amaranthaceae | Salicornia bigelovii | 2 | Sbi_jg17508, Sbi_jg62161 |
| Amaranthaceae | Salicornia europaea | 1 | Seu_jg761 |
| Amaranthaceae | Suaeda aralocaspica | 2 | GOSA_00007468, GOSA_00014481 |
| Amaranthaceae | Suaeda glauca | 2 | Sgl24168, Sgl29349 |
| Amaranthaceae | Chenopodium album | 3 | gene:ENSEOMG00000008377, gene:ENSEOMG00000028185 ... |
| Amaranthaceae | Chenopodium quinoa | 2 | CQ.Regalona.r1.4AG0003900, CQ.Regalona.r1.4BG0004080 |
| Anacardiaceae | Pistacia vera | 2 | pistato.v30097160, pistato.v30097800 |
| Apiaceae | Apium graveolens | 1 | Ag1G00048 |
| Arecaceae | Cocos nucifera | 2 | scaffold006206G000010, scaffold006206G000020 |
| Arecaceae | Phoenix dactylifera | 2 | gene-LOC103705728, gene-LOC113461932 |
| Asparagaceae | Asparagus officinalis | 2 | AsparagusV1_04.2025.V1.1, AsparagusV1_05.1796.V1.1 |
| Asteraceae | Flaveria trinervia | 1 | Ftri15G17744 |
| Brassicaceae | Arabidopsis thaliana | 2 | AT1G65090.2, AT5G36100.1 |
| Brassicaceae | Eutrema salsugineum | 2 | Thhalv10005424m.g.v1.0, Thhalv10022484m.g.v1.0 |
| Brassicaceae | Schrenkiella parvula | 2 | Sp5g19730.v2.2, Sp7g06100.v2.2 |
| Brassicaceae | Brassica nigra | 3 | BniB01g031540.2N, BniB05g061110.2N, BniB06g060880.2N |
| Cymodoceaceae | Cymodocea nodosa | 1 | gene.Cymno08g01490 |
| Hydrocharitaceae | Thalassia testudinum | 1 | gene.Thate04g22340 |
| Nitrariaceae | Nitraria sibirica | 1 | evm.TU.LG01.573 |
| Plantaginaceae | Plantago ovata | 1 | Pov_00038742 |
| Plumbaginaceae | Limonium bicolor | 2 | Lb3G16352, Lb3G16366 |
| Poaceae | Echinochloa crus-galli | 3 | AH03.2887, BH03.3071, CH03.3255 |
| Poaceae | Eleusine coracana subsp. coracana | 2 | gene-QOZ80_9AG0682210, gene-QOZ80_9BG0707310 |
| Poaceae | Hordeum vulgare | 1 | HORVU.MOREX.r3.1HG0021780.1 |
| Poaceae | Lolium multiflorum | 1 | gene-QYE76_010153 |
| Poaceae | Oryza sativa | 1 | LOC_Os12g32200.1 |
| Poaceae | Paspalum vaginatum | 1 | gene-BS78_05G135000 |
| Poaceae | Puccinellia tenuiflora | 2 | Pt_Chr0502069, Pt_Chr0502120 |
| Poaceae | Thinopyrum elongatum | 1 | Tel1E01G184700 |
| Poaceae | Triticum dicoccoides | 1 | gene_TRIDC1BG016920 |
| Poaceae | Triticum aestivum | 2 | TraesCS1B02G116200.3, TraesCS1D02G097000.1 |
| Poaceae | Zoysia japonica | 2 | nbis-gene-48803, nbis-gene-57758 |
| Poaceae | Zoysia macrostachya | 1 | Zma_g18742 |
| Portulacaceae | Portulaca oleracea | 4 | evm.TU.LG08.1319, evm.TU.LG18.1569, evm.TU.LG20.315 ... |
| Posidoniaceae | Posidonia oceanica | 1 | gene.Posoc05g03230 |
| Rhizophoraceae | Bruguiera sexangula | 1 | evm.TU.Scaffold_2_RagTag.1661 |
| Rhizophoraceae | Carallia pectinifolia | 1 | nbisL1-mrna-3542 |
| Rhizophoraceae | Ceriops tagal | 1 | nbisL1-mrna-13400 |
| Rhizophoraceae | Ceriops zippeliana | 2 | nbisL1-mrna-14000, nbisL1-mrna-14001 |
| Rhizophoraceae | Kandelia candel | 1 | evm.TU.utg000009l.303 |
| Rhizophoraceae | Kandelia obovata | 1 | Maker00006008 |
| Rhizophoraceae | Rhizophora apiculata | 2 | nbisL1-mrna-17813, nbisL1-mrna-17814 |
| Salicaceae | Populus euphratica | 3 | populus_peu02323, populus_peu37524, populus_peu37535 |
| Solanaceae | Lycium barbarum | 1 | gene-LOC132613582 |
| Solanaceae | Solanum chilense | 1 | SOLCI002739500 |
| Solanaceae | Solanum pennellii | 1 | gene-LOC107016069 |
| Tamaricaceae | Reaumuria soongarica | 1 | STRG.10549_chr07_- |
| Tamaricaceae | Tamarix chinensis | 1 | TC02G1525 |
| Zosteraceae | Zostera marina | 1 | Zosma05g02050.v3.1 |