halophFGD

Basic Information

Locus ID: Ag1G00046

Species & Taxonomic ID: Apium graveolens & 4045

Genome Assembly: GCA_009905375.1

Description: Type II inositol

Maps and Mapping Data

Chromosome	Start	End	Strand	ID
chr1	3545720	3558775	+	Ag1G00046

Protein Data

Protein Properties:

Theoretical pI	Molecular Weight	Instability Index	Aliphatic Index	GRAVY
5.71	126,747.05 Da	41.61	84.21	-0.24

Protein Domain:

Category	ID	Description	Start	End	Evalue/Score	InterPro ID
CDD	cd09074	INPP5c	541	923	1.37575E-103	-
Pfam	PF03372	Endonuclease/Exonuclease/phosphatase family	546	914	1.3E-15	IPR005135
SUPERFAMILY	SSF56219	DNase I-like	518	945	8.74E-58	IPR036691
SUPERFAMILY	SSF50978	WD40 repeat-like	133	513	4.94E-19	IPR036322
Gene3D	G3DSA:3.60.10.10	Endonuclease/exonuclease/phosphatase	520	955	1.7E-102	IPR036691
Gene3D	G3DSA:2.130.10.10	-	130	519	1.8E-11	IPR015943
SMART	SM00128	i5p_5	539	929	6.1E-82	IPR000300
MobiDBLite	mobidb-lite	consensus disorder prediction	1	22	-	-
MobiDBLite	mobidb-lite	consensus disorder prediction	1	20	-	-

Gene Ontology

Biological Process:

GO:0046856 (phosphatidylinositol dephosphorylation)

Molecular Function:

GO:0003824 (catalytic activity) GO:0005515 (protein binding) GO:0016791 (phosphatase activity)

KEGG Pathway

KO Term:

K01099 (inositol polyphosphate 5-phosphatase INPP5B/F [EC:3.1.3.36])

Pathway:

ko00562 (Inositol phosphate metabolism) map00562 (Inositol phosphate metabolism) ko01100 (Metabolic pathways) map01100 (Metabolic pathways) ko04070 (Phosphatidylinositol signaling system) map04070 (Phosphatidylinositol signaling system)

Reaction:

R04404 (1-Phosphatidyl-D-myo-inositol 4,5-bisphosphate + H2O <=> 1-Phosphatidyl-1D-myo-inositol 4-phosphate + Orthophosphate) R09827 (Phosphatidylinositol-3,4,5-trisphosphate + H2O <=> 1-Phosphatidyl-1D-myo-inositol 3,4-bisphosphate + Orthophosphate)

Best hit

Source	Best Hit ID	Description
TAIR	AT1G65580.1	Endonuclease/exonuclease/phosphatase family protein.
RefSeq	XP_017241821.1	PREDICTED: type II inositol polyphosphate 5-phosphatase 15-like isoform X1 [Daucus carota subsp. sativus]
Swiss-Prot	Q84W55	Type II inositol polyphosphate 5-phosphatase 15 OS=Arabidopsis thaliana OX=3702 GN=IP5P15 PE=1 SV=2
TrEMBL	A0A5B7BWU2	Putative type II inositol 1,4,5-trisphosphate 5-phosphatase FRA3 isoform X2 OS=Davidia involucrata OX=16924 GN=Din_042429 PE=3 SV=1

Expression

BioProject	Accession	TPM	Cultivar	Tissue	Development Stage	Sample Name	Description
PRJNA723697	SRX10692252	16.53894	Shengqin NO.2	seed	S1-1	S1-1	initial formation stage (S1)
PRJNA723697	SRX10692254	11.980956	Shengqin NO.2	seed	S1-3	S1-3	initial formation stage (S1)
PRJNA723697	SRX10692255	13.138696	Shengqin NO.2	seed	S3-1	S3-1	middle development stage (S3)
PRJNA723697	SRX10692256	14.888434	Shengqin NO.2	seed	S3-2	S3-2	middle development stage (S3)
PRJNA723697	SRX10692257	13.467194	Shengqin NO.2	seed	S3-3	S3-3	middle development stage (S3)
PRJNA723697	SRX10692258	13.929238	Shengqin NO.2	seed	S5-1	S5-1	maturation stage (S5)
PRJNA723697	SRX10692259	10.146392	Shengqin NO.2	seed	S5-2	S5-2	maturation stage (S5)
PRJNA723697	SRX10692260	8.285677	Shengqin NO.2	seed	S5-3	S5-3	maturation stage (S5)
PRJNA884666	SRX17729272	25.572947	celery	anther		W99A-r1	male sterile lineÂ
PRJNA884666	SRX17729273	24.904982	celery	anther		W99A-r2	male sterile lineÂ
PRJNA884666	SRX17729274	25.471022	celery	anther		W99A-r3	male sterile lineÂ
PRJNA884666	SRX17729275	29.654879	celery	anther		W99B-r1	maintainer line
PRJNA884666	SRX17729276	23.548639	celery	anther		W99B-r2	maintainer line
PRJNA884666	SRX17729277	20.074333	celery	anther		W99B-r3	maintainer line
PRJNA884180	SRX17743889	7.951289	var. secalinum Yablochny	collenchyma		Col_S1_rep1-1
PRJNA884180	SRX17748056	9.610499	var. secalinum Yablochny	collenchyma		Col_S1_rep3	biological replicate 3
PRJNA884180	SRX17748057	9.129579	var. secalinum Yablochny	collenchyma		Col_S1_rep4	biological replicate 4
PRJNA884180	SRX17748678	19.137508	var. secalinum Yablochny	parenchyma		Par_S1_rep1	Biological replicate 1
PRJNA884180	SRX17748679	13.075132	var. secalinum Yablochny	parenchyma		Par_S1_rep2	Biological replicate 2
PRJNA884180	SRX17748680	15.4544	var. secalinum Yablochny	parenchyma		Par_S1_rep3	Biological replicate 3
PRJNA884180	SRX17748681	17.278925	var. secalinum Yablochny	parenchyma		Par_S1_rep4	Biological replicate 4
PRJNA884180	SRX17748898	15.836332	var. secalinum Yablochny	vascular bundle		Vas_S1_rep1	Biological replicate 1
PRJNA884180	SRX17748899	14.733671	var. secalinum Yablochny	vascular bundle		Vas_S1_rep2	Biological replicate 2
PRJNA884180	SRX17748900	12.16892	var. secalinum Yablochny	vascular bundle		Vas_S1_rep3	Biological replicate 3
PRJNA884180	SRX17748901	12.413598	var. secalinum Yablochny	vascular bundle		Vas_S1_rep4	Biological replicate 4
PRJNA884180	SRX17749129	17.756004	var. secalinum Yablochny	part of the celery petiole without collenchyma strands		Collenchyma-free_S1_rep1	Biological replicate 1
PRJNA884180	SRX17749130	17.652365	var. secalinum Yablochny	part of the celery petiole without collenchyma strands		Collenchyma-free_S1_rep2	Biological replicate 2
PRJNA884180	SRX17749131	15.568089	var. secalinum Yablochny	part of the celery petiole without collenchyma strands		Collenchyma-free_S1_rep3	Biological replicate 3
PRJNA884180	SRX17749132	18.976364	var. secalinum Yablochny	part of the celery petiole without collenchyma strands		Collenchyma-free_S1_rep4	Biological replicate 4
PRJNA1124269	SRX24936411	5.275225		leaf		CK1	replicate=biological replicate1
PRJNA1124269	SRX24936412	7.243124		leaf		CK2	replicate=biological replicate2
PRJNA1124269	SRX24936413	6.159483		leaf		CK3	replicate=biological replicate3
PRJNA1124269	SRX24936414	12.198078		leaf		D1	replicate=biological replicate1
PRJNA1124269	SRX24936415	10.741876		leaf		D2	replicate=biological replicate2
PRJNA1124269	SRX24936416	13.572143		leaf		D3	replicate=biological replicate3
PRJNA1124269	SRX24936417	10.561781		leaf		MD1	replicate=biological replicate1
PRJNA1124269	SRX24936418	6.48314		leaf		MD2	replicate=biological replicate2
PRJNA1124269	SRX24936419	7.108986		leaf		MD3	replicate=biological replicate3
PRJNA387092	SRX2833309	13.777994	shanghaihuangxin	leaf	leaves between 0.5 and 1 cm in breadth, folded;	stage 2
PRJNA387092	SRX2833321	11.27269	shanghaihuangxin	leaf	leaves between 2and 2.5 cm in breadth, nearly unfolded, with clear stem exten-sion	stage 5
PRJNA387092	SRX2833323	6.770944	shanghaihuangxin	leaf	leaves >3 cm, unfolded, with clearstem extension	stage 7
PRJNA543957	SRX5879598	7.305972	Zhangzhou lvqing	stem		Se3	100 ppm Na2SeO4
PRJNA543957	SRX5879599	11.182018	Zhangzhou lvqing	stem		Se2	100 ppm Na2SeO4
PRJNA543957	SRX5879600	20.80879	Zhangzhou lvqing	stem		Mock2	mock
PRJNA543957	SRX5879601	20.356733	Zhangzhou lvqing	stem		Mock1	mock
PRJNA543957	SRX5879602	8.778085	Zhangzhou lvqing	stem		Se1	100 ppm Na2SeO4
PRJNA543957	SRX5879603	33.428604	Zhangzhou lvqing	stem		Mock3	mock
PRJNA609149	SRX7815917	11.647621	Jinnan Shiqin	flower bud	early flower bud	early flower bud
PRJNA609149	SRX7815918	10.205142	Jinnan Shiqin	flower bud	middle flower bud	middle flower bud
PRJNA609149	SRX7815919	11.901367	Jinnan Shiqin	flower bud	early flowering period	early flowering period

Network

🔍 Co-expression Network

🔍 Protein-Protein Interaction Network

Orthology

Family	Species	Count	Orthologous Genes
Acanthaceae	Avicennia marina	3	jg10935, jg13306, jg9842
Aizoaceae	Mesembryanthemum crystallinum	2	gene_10156, gene_15743
Amaranthaceae	Atriplex hortensis	2	Ah005139, Ah019686
Amaranthaceae	Beta vulgaris	2	BVRB_3g059200, BVRB_4g074530
Amaranthaceae	Salicornia bigelovii	4	Sbi_jg17390, Sbi_jg4979, Sbi_jg62040, Sbi_jg6737
Amaranthaceae	Salicornia europaea	2	Seu_jg12919, Seu_jg653
Amaranthaceae	Suaeda aralocaspica	2	GOSA_00003781, GOSA_00015543
Amaranthaceae	Suaeda glauca	3	Sgl00555, Sgl05568, Sgl29457
Amaranthaceae	Chenopodium album	5	gene:ENSEOMG00000009152, gene:ENSEOMG00000011754 ... gene:ENSEOMG00000030495, gene:ENSEOMG00000031261, gene:ENSEOMG00000043375
Amaranthaceae	Chenopodium quinoa	4	CQ.Regalona.r1.3AG0011590, CQ.Regalona.r1.3BG0011710 ... CQ.Regalona.r1.4AG0002820, CQ.Regalona.r1.4BG0002950
Anacardiaceae	Pistacia vera	2	pistato.v30038890, pistato.v30221410
Apiaceae	Apium graveolens	4	Ag11G03690, Ag1G00046, Ag5G02750, Ag8G01299
Arecaceae	Cocos nucifera	3	COCNU_02G008130, COCNU_11G002360, scaffold003697G000020
Arecaceae	Phoenix dactylifera	2	gene-LOC103715204, gene-LOC103722592
Asparagaceae	Asparagus officinalis	3	AsparagusV1_04.2040.V1.1, AsparagusV1_09.1682.V1.1 ... AsparagusV1_10.1295.V1.1
Asteraceae	Flaveria trinervia	3	Ftri11G14531, Ftri12G01313, Ftri17G01218
Brassicaceae	Arabidopsis thaliana	4	AT1G05630.1, AT1G65580.1, AT2G31830.2, AT2G43900.1
Brassicaceae	Eutrema salsugineum	4	Thhalv10001286m.g.v1.0, Thhalv10006606m.g.v1.0 ... Thhalv10016160m.g.v1.0, Thhalv10018032m.g.v1.0
Brassicaceae	Schrenkiella parvula	4	Sp1g04480.v2.2, Sp4g14110.v2.2, Sp4g25990.v2.2 ... Sp5g20500.v2.2
Brassicaceae	Brassica nigra	6	BniB02g002460.2N, BniB03g001430.2N, BniB03g043170.2N ... BniB06g020860.2N, BniB06g044930.2N, BniB08g028680.2N
Casuarinaceae	Casuarina equisetifolia	2	Ceq06G1376, Ceq07G0258
Casuarinaceae	Casuarina glauca	2	Cgl06G1442, Cgl07G0246
Cymodoceaceae	Cymodocea nodosa	2	gene.Cymno02g00160, gene.Cymno05g06360
Dunaliellaceae	Dunaliella salina	1	Dusal.0256s00010.v1.0
Hydrocharitaceae	Thalassia testudinum	2	gene.Thate06g19970, gene.Thate07g00050
Nitrariaceae	Nitraria sibirica	2	evm.TU.LG11.465, evm.TU.LG12.230
Plantaginaceae	Plantago ovata	2	Pov_00025077, Pov_00038862
Plumbaginaceae	Limonium bicolor	5	Lb0G37887, Lb1G04267, Lb3G21174, Lb3G21179, Lb7G33447
Poaceae	Echinochloa crus-galli	9	AH03.2483, AH07.1752, AH08.2122, BH03.2624, BH07.1738 ... BH08.2235, CH03.2833, CH07.1593, CH08.2417
Poaceae	Eleusine coracana subsp. coracana	6	gene-QOZ80_2AG0130870, gene-QOZ80_2BG0186120 ... gene-QOZ80_6AG0540400, gene-QOZ80_6BG0493710, gene-QOZ80_8AG0637880, gene-QOZ80_8BG0666350
Poaceae	Hordeum vulgare	3	HORVU.MOREX.r3.4HG0391200.1, HORVU.MOREX.r3.5HG0492850.1 ... HORVU.MOREX.r3.7HG0682490.1
Poaceae	Lolium multiflorum	5	gene-QYE76_006399, gene-QYE76_007935, gene-QYE76_022112 ... gene-QYE76_030171, gene-QYE76_030180
Poaceae	Oryza coarctata	4	Oco04G010650, Oco15G010510, Oco17G008570, Oco18G008650
Poaceae	Oryza sativa	3	LOC_Os02g27620.1, LOC_Os08g41270.1, LOC_Os09g32440.1
Poaceae	Paspalum vaginatum	3	gene-BS78_02G230200, gene-BS78_04G134500 ... gene-BS78_07G197100
Poaceae	Puccinellia tenuiflora	6	Pt_Chr0201854, Pt_Chr0201855, Pt_Chr0403701, Pt_Chr0403706 ... Pt_Chr0701510, Pt_Chr0701518
Poaceae	Sporobolus alterniflorus	8	Chr06G011620, Chr0G001140, Chr10G014860, Chr11G007380 ... Chr14G016580, Chr15G013370, Chr20G001560, Chr29G001930
Poaceae	Thinopyrum elongatum	3	Tel4E01G385300, Tel5E01G444100, Tel7E01G451100
Poaceae	Triticum dicoccoides	6	gene_TRIDC4AG011340, gene_TRIDC4BG039110 ... gene_TRIDC5AG041860, gene_TRIDC5BG045790, gene_TRIDC7AG033000, gene_TRIDC7BG024130
Poaceae	Triticum aestivum	9	TraesCS4A02G082700.1, TraesCS4B02G221300.1 ... TraesCS4D02G221700.1, TraesCS5A02G278100.1, TraesCS5B02G277500.1, TraesCS5D02G285100.2, TraesCS7A02G255500.2, TraesCS7B02G151900.2, TraesCS7D02G253900.2
Poaceae	Zea mays	5	Zm00001eb035960_P003, Zm00001eb102240_P001 ... Zm00001eb174880_P001, Zm00001eb241060_P002, Zm00001eb317410_P001
Poaceae	Zoysia japonica	5	nbis-gene-10393, nbis-gene-19025, nbis-gene-19426 ... nbis-gene-42651, nbis-gene-55974
Poaceae	Zoysia macrostachya	5	Zma_g16318, Zma_g23287, Zma_g30580, Zma_g30581, Zma_g32832
Portulacaceae	Portulaca oleracea	7	evm.TU.LG04.792, evm.TU.LG05.2137, evm.TU.LG06.1545 ... evm.TU.LG08.1384, evm.TU.LG11.900, evm.TU.LG15.1489, evm.TU.LG22.282
Posidoniaceae	Posidonia oceanica	2	gene.Posoc01g12210, gene.Posoc02g34630
Rhizophoraceae	Bruguiera sexangula	3	evm.TU.Scaffold_11_RagTag.1519, evm.TU.Scaffold_6_RagTag.543 ... evm.TU.Scaffold_3_RagTag.1563
Rhizophoraceae	Carallia pectinifolia	2	nbisL1-mrna-12811, nbisL1-mrna-15472
Rhizophoraceae	Ceriops tagal	2	nbisL1-mrna-15837, nbisL1-mrna-20489
Rhizophoraceae	Ceriops zippeliana	3	nbisL1-mrna-22522, nbisL1-mrna-435, nbisL1-mrna-436
Rhizophoraceae	Kandelia candel	3	evm.TU.utg000010l.464, evm.TU.utg000011l.302 ... evm.TU.utg000019l.289
Rhizophoraceae	Kandelia obovata	3	Maker00001975, Maker00006896, Maker00008896
Rhizophoraceae	Rhizophora apiculata	3	nbisL1-mrna-1177, nbisL1-mrna-13775, nbisL1-mrna-5393
Rhizophoraceae	Rhizophora mangle	3	nbisL1-mrna-12932, nbisL1-mrna-20459, nbisL1-mrna-3705
Salicaceae	Populus euphratica	4	populus_peu06647, populus_peu20538, populus_peu22459 ... populus_peu23863
Solanaceae	Lycium barbarum	3	gene-LOC132604308, gene-LOC132609280, gene-LOC132616131
Solanaceae	Solanum chilense	2	SOLCI002246200, SOLCI003029900
Solanaceae	Solanum pennellii	5	gene-LOC107004647, gene-LOC107005773, gene-LOC107006083 ... gene-LOC107024969, gene-LOC107028043
Tamaricaceae	Reaumuria soongarica	3	STRG.28005_chr04_-, gene_12475, gene_6447
Tamaricaceae	Tamarix chinensis	3	TC01G1323, TC02G2976, TC12G1828
Zosteraceae	Zostera marina	3	Zosma01g32200.v3.1, Zosma03g17510.v3.1, Zosma04g26790.v3.1