halophFGD

Basic Information

Locus ID: Ag1G00022

Species & Taxonomic ID: Apium graveolens & 4045

Genome Assembly: GCA_009905375.1

Short Name: CPK24

Description: Calcium-dependent protein kinase

Maps and Mapping Data

Chromosome	Start	End	Strand	ID
chr1	2182344	2184790	-	Ag1G00022

Protein Data

Protein Properties:

Theoretical pI	Molecular Weight	Instability Index	Aliphatic Index	GRAVY
5.57	50,898.63 Da	37.44	80.90	-0.48

Protein Domain:

Category	ID	Description	Start	End	Evalue/Score	InterPro ID
CDD	cd00051	EFh	343	406	6.35115E-16	IPR002048
Pfam	PF13499	EF-hand domain pair	271	331	1.5E-8	IPR002048
Pfam	PF00069	Protein kinase domain	55	211	3.0E-43	IPR000719
Pfam	PF13499	EF-hand domain pair	341	406	1.5E-13	IPR002048
SUPERFAMILY	SSF47473	EF-hand	264	405	1.57E-40	IPR011992
SUPERFAMILY	SSF56112	Protein kinase-like (PK-like)	34	261	5.53E-57	IPR011009
Gene3D	G3DSA:1.10.238.10	-	265	429	3.7E-39	-
Gene3D	G3DSA:1.10.510.10	Transferase(Phosphotransferase) domain 1	46	210	4.2E-51	-
Gene3D	G3DSA:1.10.510.10	Transferase(Phosphotransferase) domain 1	211	264	5.4E-7	-
SMART	SM00220	serkin_6	55	265	7.2E-44	IPR000719
SMART	SM00054	efh_1	343	371	1.9E-6	IPR002048
SMART	SM00054	efh_1	380	408	4.0E-4	IPR002048
SMART	SM00054	efh_1	271	299	0.0038	IPR002048
SMART	SM00054	efh_1	307	335	0.29	IPR002048
ProSiteProfiles	PS50011	Protein kinase domain profile.	55	337	27.679331	IPR000719
ProSiteProfiles	PS50222	EF-hand calcium-binding domain profile.	376	411	11.277538	IPR002048
ProSiteProfiles	PS50222	EF-hand calcium-binding domain profile.	339	374	15.573431	IPR002048
ProSiteProfiles	PS50222	EF-hand calcium-binding domain profile.	303	338	9.659605	IPR002048
ProSiteProfiles	PS50222	EF-hand calcium-binding domain profile.	267	302	12.811786	IPR002048
ProSitePatterns	PS00018	EF-hand calcium-binding domain.	389	401	-	IPR018247
ProSitePatterns	PS00018	EF-hand calcium-binding domain.	280	292	-	IPR018247
ProSitePatterns	PS00018	EF-hand calcium-binding domain.	352	364	-	IPR018247
ProSitePatterns	PS00108	Serine/Threonine protein kinases active-site signature.	175	187	-	IPR008271
ProSitePatterns	PS00018	EF-hand calcium-binding domain.	316	328	-	IPR018247
ProSitePatterns	PS00107	Protein kinases ATP-binding region signature.	61	84	-	IPR017441

Gene Ontology

Biological Process:

GO:0006468 (protein phosphorylation)

Molecular Function:

GO:0004672 (protein kinase activity) GO:0005509 (calcium ion binding) GO:0005524 (ATP binding)

KEGG Pathway

KO Term:

K13412 (calcium-dependent protein kinase [EC:2.7.11.1])

Pathway:

ko04626 (Plant-pathogen interaction) map04626 (Plant-pathogen interaction)

Best hit

Source	Best Hit ID	Description
TAIR	AT5G12480.1	calmodulin-domain protein kinase 7. calmodulin-domain protein kinase CDPK isoform 7 (CPK7)
RefSeq	XP_017226555.1	PREDICTED: calcium-dependent protein kinase 24-like [Daucus carota subsp. sativus]
Swiss-Prot	Q38873	Calcium-dependent protein kinase 7 OS=Arabidopsis thaliana OX=3702 GN=CPK7 PE=2 SV=1
TrEMBL	A0A175YFS9	Calcium-dependent protein kinase 24-like OS=Daucus carota subsp. sativus OX=79200 GN=DCAR_029922 PE=4 SV=1

Expression

BioProject	Accession	TPM	Cultivar	Tissue	Development Stage	Sample Name	Description
PRJNA723697	SRX10692252	0	Shengqin NO.2	seed	S1-1	S1-1	initial formation stage (S1)
PRJNA723697	SRX10692254	0.124654	Shengqin NO.2	seed	S1-3	S1-3	initial formation stage (S1)
PRJNA723697	SRX10692255	0	Shengqin NO.2	seed	S3-1	S3-1	middle development stage (S3)
PRJNA723697	SRX10692256	0.062871	Shengqin NO.2	seed	S3-2	S3-2	middle development stage (S3)
PRJNA723697	SRX10692257	0	Shengqin NO.2	seed	S3-3	S3-3	middle development stage (S3)
PRJNA723697	SRX10692258	0	Shengqin NO.2	seed	S5-1	S5-1	maturation stage (S5)
PRJNA723697	SRX10692259	0	Shengqin NO.2	seed	S5-2	S5-2	maturation stage (S5)
PRJNA723697	SRX10692260	0	Shengqin NO.2	seed	S5-3	S5-3	maturation stage (S5)
PRJNA884666	SRX17729272	0	celery	anther		W99A-r1	male sterile lineÂ
PRJNA884666	SRX17729273	0.05118	celery	anther		W99A-r2	male sterile lineÂ
PRJNA884666	SRX17729274	0.223041	celery	anther		W99A-r3	male sterile lineÂ
PRJNA884666	SRX17729275	0.602571	celery	anther		W99B-r1	maintainer line
PRJNA884666	SRX17729276	0.210414	celery	anther		W99B-r2	maintainer line
PRJNA884666	SRX17729277	0.140742	celery	anther		W99B-r3	maintainer line
PRJNA884180	SRX17743889	0.058585	var. secalinum Yablochny	collenchyma		Col_S1_rep1-1
PRJNA884180	SRX17748056	0	var. secalinum Yablochny	collenchyma		Col_S1_rep3	biological replicate 3
PRJNA884180	SRX17748057	0	var. secalinum Yablochny	collenchyma		Col_S1_rep4	biological replicate 4
PRJNA884180	SRX17748678	0	var. secalinum Yablochny	parenchyma		Par_S1_rep1	Biological replicate 1
PRJNA884180	SRX17748679	0.488688	var. secalinum Yablochny	parenchyma		Par_S1_rep2	Biological replicate 2
PRJNA884180	SRX17748680	0	var. secalinum Yablochny	parenchyma		Par_S1_rep3	Biological replicate 3
PRJNA884180	SRX17748681	0	var. secalinum Yablochny	parenchyma		Par_S1_rep4	Biological replicate 4
PRJNA884180	SRX17748898	0.304265	var. secalinum Yablochny	vascular bundle		Vas_S1_rep1	Biological replicate 1
PRJNA884180	SRX17748899	0.103965	var. secalinum Yablochny	vascular bundle		Vas_S1_rep2	Biological replicate 2
PRJNA884180	SRX17748900	0	var. secalinum Yablochny	vascular bundle		Vas_S1_rep3	Biological replicate 3
PRJNA884180	SRX17748901	0.504855	var. secalinum Yablochny	vascular bundle		Vas_S1_rep4	Biological replicate 4
PRJNA884180	SRX17749129	0.348486	var. secalinum Yablochny	part of the celery petiole without collenchyma strands		Collenchyma-free_S1_rep1	Biological replicate 1
PRJNA884180	SRX17749130	0	var. secalinum Yablochny	part of the celery petiole without collenchyma strands		Collenchyma-free_S1_rep2	Biological replicate 2
PRJNA884180	SRX17749131	0	var. secalinum Yablochny	part of the celery petiole without collenchyma strands		Collenchyma-free_S1_rep3	Biological replicate 3
PRJNA884180	SRX17749132	0.276248	var. secalinum Yablochny	part of the celery petiole without collenchyma strands		Collenchyma-free_S1_rep4	Biological replicate 4
PRJNA1124269	SRX24936411	2.578101		leaf		CK1	replicate=biological replicate1
PRJNA1124269	SRX24936412	0.934044		leaf		CK2	replicate=biological replicate2
PRJNA1124269	SRX24936413	0.527025		leaf		CK3	replicate=biological replicate3
PRJNA1124269	SRX24936414	0		leaf		D1	replicate=biological replicate1
PRJNA1124269	SRX24936415	71.864105		leaf		D2	replicate=biological replicate2
PRJNA1124269	SRX24936416	0		leaf		D3	replicate=biological replicate3
PRJNA1124269	SRX24936417	0.276109		leaf		MD1	replicate=biological replicate1
PRJNA1124269	SRX24936418	0.052096		leaf		MD2	replicate=biological replicate2
PRJNA1124269	SRX24936419	0.069327		leaf		MD3	replicate=biological replicate3
PRJNA387092	SRX2833309	1.8256	shanghaihuangxin	leaf	leaves between 0.5 and 1 cm in breadth, folded;	stage 2
PRJNA387092	SRX2833321	1.441622	shanghaihuangxin	leaf	leaves between 2and 2.5 cm in breadth, nearly unfolded, with clear stem exten-sion	stage 5
PRJNA387092	SRX2833323	0.553581	shanghaihuangxin	leaf	leaves >3 cm, unfolded, with clearstem extension	stage 7
PRJNA543957	SRX5879598	0	Zhangzhou lvqing	stem		Se3	100 ppm Na2SeO4
PRJNA543957	SRX5879599	0	Zhangzhou lvqing	stem		Se2	100 ppm Na2SeO4
PRJNA543957	SRX5879600	0	Zhangzhou lvqing	stem		Mock2	mock
PRJNA543957	SRX5879601	0	Zhangzhou lvqing	stem		Mock1	mock
PRJNA543957	SRX5879602	0	Zhangzhou lvqing	stem		Se1	100 ppm Na2SeO4
PRJNA543957	SRX5879603	0	Zhangzhou lvqing	stem		Mock3	mock
PRJNA609149	SRX7815917	31.034651	Jinnan Shiqin	flower bud	early flower bud	early flower bud
PRJNA609149	SRX7815918	222.332932	Jinnan Shiqin	flower bud	middle flower bud	middle flower bud
PRJNA609149	SRX7815919	189.525711	Jinnan Shiqin	flower bud	early flowering period	early flowering period

Network

🔍 Co-expression Network

🔍 Protein-Protein Interaction Network

Orthology

Family	Species	Count	Orthologous Genes
Apiaceae	Apium graveolens	2	Ag1G00022, AgUnG00188
Rhizophoraceae	Ceriops zippeliana	1	nbisL1-mrna-2699