Basic Information
Locus ID:
Ag1G00005
Species & Taxonomic ID:
Apium graveolens & 4045
Genome Assembly:
GCA_009905375.1
Description:
LRR receptor-like serine threonine-protein kinase FEI
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr1 | 220247 | 231093 | - | Ag1G00005 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.95 | 64,801.30 Da | 40.03 | 97.63 | -0.09 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF08263 | Leucine rich repeat N-terminal domain | 26 | 65 | 2.1E-11 | IPR013210 |
| Pfam | PF00069 | Protein kinase domain | 307 | 570 | 2.2E-46 | IPR000719 |
| SUPERFAMILY | SSF52058 | L domain-like | 27 | 187 | 7.78E-37 | - |
| SUPERFAMILY | SSF56112 | Protein kinase-like (PK-like) | 288 | 572 | 3.96E-76 | IPR011009 |
| Gene3D | G3DSA:1.10.510.10 | Transferase(Phosphotransferase) domain 1 | 381 | 579 | 1.0E-61 | - |
| Gene3D | G3DSA:3.30.200.20 | Phosphorylase Kinase; domain 1 | 282 | 380 | 7.3E-21 | - |
| Gene3D | G3DSA:3.80.10.10 | Ribonuclease Inhibitor | 26 | 211 | 3.1E-55 | IPR032675 |
| SMART | SM00220 | serkin_6 | 305 | 577 | 9.4E-33 | IPR000719 |
| ProSiteProfiles | PS50011 | Protein kinase domain profile. | 305 | 577 | 38.619049 | IPR000719 |
| ProSitePatterns | PS00107 | Protein kinases ATP-binding region signature. | 311 | 337 | - | IPR017441 |
| ProSitePatterns | PS00108 | Serine/Threonine protein kinases active-site signature. | 424 | 436 | - | IPR008271 |
Gene Ontology
Biological Process:
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G31420.2 | Leucine-rich repeat protein kinase family protein. Encodes a plasma membrane localized leucine-rich repeat receptor kinase that is involved in cell wall elongation. Loss of function mutations of FEI1 and FEI2 exhibit defects in root and hypocotyl cell elongation. Double mutants are defective in cell wall biosynthesis and have thick hypocotyls, and short, thick roots. | 0 |
| RefSeq | XP_017226517.1 | PREDICTED: LRR receptor-like serine/threonine-protein kinase FEI 2 isoform X1 [Daucus carota subsp. sativus] | 0 |
| C0LGF4 | LRR receptor-like serine/threonine-protein kinase FEI 1 OS=Arabidopsis thaliana OX=3702 GN=FEI1 PE=1 SV=1 | 0 | |
| TrEMBL | A0A834WSB1 | LRR receptor-like serine/threonine-protein kinase FEI 1 OS=Senna tora OX=362788 GN=G2W53_020293 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| PRJNA723697 | SRX10692252 | 58.65472 | Shengqin NO.2 | seed | S1-1 | S1-1 | initial formation stage (S1) |
| PRJNA723697 | SRX10692254 | 39.327148 | Shengqin NO.2 | seed | S1-3 | S1-3 | initial formation stage (S1) |
| PRJNA723697 | SRX10692255 | 40.196213 | Shengqin NO.2 | seed | S3-1 | S3-1 | middle development stage (S3) |
| PRJNA723697 | SRX10692256 | 39.082642 | Shengqin NO.2 | seed | S3-2 | S3-2 | middle development stage (S3) |
| PRJNA723697 | SRX10692257 | 39.276531 | Shengqin NO.2 | seed | S3-3 | S3-3 | middle development stage (S3) |
| PRJNA723697 | SRX10692258 | 40.347961 | Shengqin NO.2 | seed | S5-1 | S5-1 | maturation stage (S5) |
| PRJNA723697 | SRX10692259 | 31.866278 | Shengqin NO.2 | seed | S5-2 | S5-2 | maturation stage (S5) |
| PRJNA723697 | SRX10692260 | 30.07979 | Shengqin NO.2 | seed | S5-3 | S5-3 | maturation stage (S5) |
| PRJNA884666 | SRX17729272 | 80.969307 | celery | anther | W99A-r1 | male sterile line | |
| PRJNA884666 | SRX17729273 | 82.724831 | celery | anther | W99A-r2 | male sterile line | |
| PRJNA884666 | SRX17729274 | 92.021553 | celery | anther | W99A-r3 | male sterile line | |
| PRJNA884666 | SRX17729275 | 80.53231 | celery | anther | W99B-r1 | maintainer line | |
| PRJNA884666 | SRX17729276 | 75.504501 | celery | anther | W99B-r2 | maintainer line | |
| PRJNA884666 | SRX17729277 | 62.473186 | celery | anther | W99B-r3 | maintainer line | |
| PRJNA884180 | SRX17743889 | 105.874634 | var. secalinum Yablochny | collenchyma | Col_S1_rep1-1 | ||
| PRJNA884180 | SRX17748056 | 114.011002 | var. secalinum Yablochny | collenchyma | Col_S1_rep3 | biological replicate 3 | |
| PRJNA884180 | SRX17748057 | 88.967323 | var. secalinum Yablochny | collenchyma | Col_S1_rep4 | biological replicate 4 | |
| PRJNA884180 | SRX17748678 | 102.141953 | var. secalinum Yablochny | parenchyma | Par_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17748679 | 85.735077 | var. secalinum Yablochny | parenchyma | Par_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17748680 | 91.752663 | var. secalinum Yablochny | parenchyma | Par_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17748681 | 87.048943 | var. secalinum Yablochny | parenchyma | Par_S1_rep4 | Biological replicate 4 | |
| PRJNA884180 | SRX17748898 | 103.798538 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17748899 | 105.342819 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17748900 | 91.087936 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17748901 | 90.126221 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep4 | Biological replicate 4 | |
| PRJNA884180 | SRX17749129 | 109.542221 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17749130 | 100.315437 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17749131 | 83.525818 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17749132 | 107.491615 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep4 | Biological replicate 4 | |
| PRJNA1124269 | SRX24936411 | 36.706741 | leaf | CK1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936412 | 49.376137 | leaf | CK2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936413 | 40.29718 | leaf | CK3 | replicate=biological replicate3 | ||
| PRJNA1124269 | SRX24936414 | 40.517002 | leaf | D1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936415 | 36.025394 | leaf | D2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936416 | 41.642689 | leaf | D3 | replicate=biological replicate3 | ||
| PRJNA1124269 | SRX24936417 | 23.734591 | leaf | MD1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936418 | 26.794184 | leaf | MD2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936419 | 25.184549 | leaf | MD3 | replicate=biological replicate3 | ||
| PRJNA387092 | SRX2833309 | 58.794724 | shanghaihuangxin | leaf | leaves between 0.5 and 1 cm in breadth, folded; | stage 2 | |
| PRJNA387092 | SRX2833321 | 51.108482 | shanghaihuangxin | leaf | leaves between 2and 2.5 cm in breadth, nearly unfolded, with clear stem exten-sion | stage 5 | |
| PRJNA387092 | SRX2833323 | 35.740807 | shanghaihuangxin | leaf | leaves >3 cm, unfolded, with clearstem extension | stage 7 | |
| PRJNA543957 | SRX5879598 | 45.775383 | Zhangzhou lvqing | stem | Se3 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879599 | 97.020882 | Zhangzhou lvqing | stem | Se2 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879600 | 106.090355 | Zhangzhou lvqing | stem | Mock2 | mock | |
| PRJNA543957 | SRX5879601 | 118.67202 | Zhangzhou lvqing | stem | Mock1 | mock | |
| PRJNA543957 | SRX5879602 | 56.565205 | Zhangzhou lvqing | stem | Se1 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879603 | 135.653824 | Zhangzhou lvqing | stem | Mock3 | mock | |
| PRJNA609149 | SRX7815917 | 65.41967 | Jinnan Shiqin | flower bud | early flower bud | early flower bud | |
| PRJNA609149 | SRX7815918 | 60.335033 | Jinnan Shiqin | flower bud | middle flower bud | middle flower bud | |
| PRJNA609149 | SRX7815919 | 57.467678 | Jinnan Shiqin | flower bud | early flowering period | early flowering period |
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Acanthaceae | Avicennia marina | 1 | jg36909 |
| Aizoaceae | Mesembryanthemum crystallinum | 1 | gene_15117 |
| Amaranthaceae | Atriplex hortensis | 1 | Ah004691 |
| Amaranthaceae | Beta vulgaris | 1 | BVRB_5g108340 |
| Amaranthaceae | Salicornia bigelovii | 2 | Sbi_jg24316, Sbi_jg8148 |
| Amaranthaceae | Salicornia europaea | 1 | Seu_jg11875 |
| Amaranthaceae | Suaeda aralocaspica | 1 | GOSA_00010863 |
| Amaranthaceae | Suaeda glauca | 2 | Sgl52505, Sgl57765 |
| Amaranthaceae | Chenopodium album | 3 | gene:ENSEOMG00000006654, gene:ENSEOMG00000023553 ... |
| Amaranthaceae | Chenopodium quinoa | 2 | CQ.Regalona.r1.5AG0000860, CQ.Regalona.r1.5BG0001030 |
| Anacardiaceae | Pistacia vera | 1 | pistato.v30020970 |
| Apiaceae | Apium graveolens | 1 | Ag1G00005 |
| Arecaceae | Cocos nucifera | 1 | COCNU_10G009650 |
| Arecaceae | Phoenix dactylifera | 2 | gene-LOC103716644, gene-LOC108510915 |
| Asparagaceae | Asparagus officinalis | 1 | AsparagusV1_04.1064.V1.1 |
| Asteraceae | Flaveria trinervia | 3 | Ftri13G19631, Ftri14G02853, Ftri7G02746 |
| Brassicaceae | Arabidopsis thaliana | 2 | AT1G31420.1, AT2G35620.1 |
| Brassicaceae | Eutrema salsugineum | 2 | Thhalv10007149m.g.v1.0, Thhalv10016417m.g.v1.0 |
| Brassicaceae | Schrenkiella parvula | 2 | Sp1g27220.v2.2, Sp4g17860.v2.2 |
| Brassicaceae | Brassica nigra | 3 | BniB01g008960.2N, BniB06g008330.2N, BniB08g022330.2N |
| Casuarinaceae | Casuarina equisetifolia | 1 | Ceq01G0895 |
| Casuarinaceae | Casuarina glauca | 2 | Cgl01G1020, Cgl06G0436 |
| Cymodoceaceae | Cymodocea nodosa | 1 | gene.Cymno18g04890 |
| Hydrocharitaceae | Thalassia testudinum | 1 | gene.Thate05g07290 |
| Nitrariaceae | Nitraria sibirica | 1 | evm.TU.LG05.973 |
| Plantaginaceae | Plantago ovata | 2 | Pov_00003704, Pov_00028638 |
| Plumbaginaceae | Limonium bicolor | 2 | Lb2G12032, Lb7G35211 |
| Poaceae | Echinochloa crus-galli | 4 | AH01.4233, BH01.4537, CH01.4840, Contig2765.1 |
| Poaceae | Eleusine coracana subsp. coracana | 2 | gene-QOZ80_3AG0242320, gene-QOZ80_3BG0285830 |
| Poaceae | Hordeum vulgare | 1 | HORVU.MOREX.r3.4HG0389380.1 |
| Poaceae | Lolium multiflorum | 1 | gene-QYE76_069085 |
| Poaceae | Oryza coarctata | 2 | Oco05G009140, Oco06G009490 |
| Poaceae | Oryza sativa | 1 | LOC_Os03g16010.1 |
| Poaceae | Paspalum vaginatum | 1 | gene-BS78_01G405900 |
| Poaceae | Puccinellia tenuiflora | 2 | Pt_Chr0102215, Pt_Chr0102238 |
| Poaceae | Sporobolus alterniflorus | 3 | Chr04G007430, Chr07G004220, Chr12G008950 |
| Poaceae | Thinopyrum elongatum | 1 | Tel4E01G372600 |
| Poaceae | Triticum dicoccoides | 2 | gene_TRIDC4AG012570, gene_TRIDC4BG037730 |
| Poaceae | Triticum aestivum | 3 | TraesCS4A02G092500.1, TraesCS4B02G211800.1 ... |
| Poaceae | Zea mays | 2 | Zm00001eb011920_P001, Zm00001eb397950_P001 |
| Poaceae | Zoysia japonica | 2 | nbis-gene-2136, nbis-gene-3796 |
| Poaceae | Zoysia macrostachya | 2 | Zma_g1563, Zma_g3956 |
| Portulacaceae | Portulaca oleracea | 4 | evm.TU.LG04.2920, evm.TU.LG10.550, evm.TU.LG16.694 ... |
| Posidoniaceae | Posidonia oceanica | 1 | gene.Posoc07g02140 |
| Rhizophoraceae | Bruguiera sexangula | 1 | evm.TU.Scaffold_16_RagTag.665 |
| Rhizophoraceae | Carallia pectinifolia | 1 | nbisL1-mrna-24822 |
| Rhizophoraceae | Ceriops tagal | 1 | nbisL1-mrna-18524 |
| Rhizophoraceae | Ceriops zippeliana | 1 | nbisL1-mrna-19071 |
| Rhizophoraceae | Kandelia candel | 2 | evm.TU.utg000022l.175, evm.TU.utg000022l.176 |
| Rhizophoraceae | Kandelia obovata | 1 | Maker00016171 |
| Rhizophoraceae | Rhizophora apiculata | 1 | nbisL1-mrna-184 |
| Rhizophoraceae | Rhizophora mangle | 1 | nbisL1-mrna-10438 |
| Salicaceae | Populus euphratica | 3 | populus_peu03314, populus_peu34161, populus_peu37974 |
| Solanaceae | Lycium barbarum | 2 | gene-LOC132609594, gene-LOC132635514 |
| Solanaceae | Solanum chilense | 1 | SOLCI002772200 |
| Solanaceae | Solanum pennellii | 1 | gene-LOC107028457 |
| Tamaricaceae | Reaumuria soongarica | 1 | gene_16130 |
| Tamaricaceae | Tamarix chinensis | 1 | TC09G0556 |
| Zosteraceae | Zostera marina | 1 | Zosma02g02270.v3.1 |