Basic Information
Locus ID:
Ag11G05075
Species & Taxonomic ID:
Apium graveolens & 4045
Genome Assembly:
GCA_009905375.1
Description:
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr11 | 206362172 | 206368045 | - | Ag11G05075 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 4.95 | 133,068.20 Da | 49.46 | 91.89 | -0.90 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF07765 | KIP1-like protein | 11 | 74 | 1.3E-12 | IPR011684 |
| ProSiteProfiles | PS51774 | Networked (NET) actin-binding (NAB) domain profile. | 7 | 80 | 26.11784 | IPR011684 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 82 | 107 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 82 | 120 | - | - |
| Coils | Coil | Coil | 351 | 371 | - | - |
| Coils | Coil | Coil | 116 | 178 | - | - |
| Coils | Coil | Coil | 394 | 421 | - | - |
| Coils | Coil | Coil | 667 | 701 | - | - |
| Coils | Coil | Coil | 454 | 477 | - | - |
| Coils | Coil | Coil | 235 | 297 | - | - |
| Coils | Coil | Coil | 832 | 916 | - | - |
| Coils | Coil | Coil | 586 | 634 | - | - |
| Coils | Coil | Coil | 305 | 332 | - | - |
| Coils | Coil | Coil | 497 | 538 | - | - |
| Coils | Coil | Coil | 924 | 951 | - | - |
| Coils | Coil | Coil | 1034 | 1082 | - | - |
| Coils | Coil | Coil | 193 | 220 | - | - |
| Coils | Coil | Coil | 709 | 817 | - | - |
| Coils | Coil | Coil | 639 | 659 | - | - |
| Coils | Coil | Coil | 550 | 577 | - | - |
Gene Ontology
Molecular Function:
KEGG Pathway
KO Term:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G41790.1 | COP1-interactive protein 1. encodes a protein that physically interacts specifically with the putative coiled-coil region of COP1 in vitro. In hypocotyl and cotyledon protoplasts, it is associated to the cytoskeleton, but not in the root. expression is not regulated by light. | 0 |
| RefSeq | XP_017235291.1 | PREDICTED: paramyosin [Daucus carota subsp. sativus] | 0 |
| F4JZY1 | COP1-interactive protein 1 OS=Arabidopsis thaliana OX=3702 GN=CIP1 PE=1 SV=1 | 0 | |
| TrEMBL | A0A166CQB5 | NAB domain-containing protein OS=Daucus carota subsp. sativus OX=79200 GN=DCAR_005027 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| PRJNA723697 | SRX10692252 | 18.500944 | Shengqin NO.2 | seed | S1-1 | S1-1 | initial formation stage (S1) |
| PRJNA723697 | SRX10692254 | 16.226088 | Shengqin NO.2 | seed | S1-3 | S1-3 | initial formation stage (S1) |
| PRJNA723697 | SRX10692255 | 13.745559 | Shengqin NO.2 | seed | S3-1 | S3-1 | middle development stage (S3) |
| PRJNA723697 | SRX10692256 | 14.837314 | Shengqin NO.2 | seed | S3-2 | S3-2 | middle development stage (S3) |
| PRJNA723697 | SRX10692257 | 15.663675 | Shengqin NO.2 | seed | S3-3 | S3-3 | middle development stage (S3) |
| PRJNA723697 | SRX10692258 | 16.773436 | Shengqin NO.2 | seed | S5-1 | S5-1 | maturation stage (S5) |
| PRJNA723697 | SRX10692259 | 14.165711 | Shengqin NO.2 | seed | S5-2 | S5-2 | maturation stage (S5) |
| PRJNA723697 | SRX10692260 | 10.406977 | Shengqin NO.2 | seed | S5-3 | S5-3 | maturation stage (S5) |
| PRJNA884666 | SRX17729272 | 32.64257 | celery | anther | W99A-r1 | male sterile line | |
| PRJNA884666 | SRX17729273 | 30.853611 | celery | anther | W99A-r2 | male sterile line | |
| PRJNA884666 | SRX17729274 | 35.441238 | celery | anther | W99A-r3 | male sterile line | |
| PRJNA884666 | SRX17729275 | 30.72204 | celery | anther | W99B-r1 | maintainer line | |
| PRJNA884666 | SRX17729276 | 30.705986 | celery | anther | W99B-r2 | maintainer line | |
| PRJNA884666 | SRX17729277 | 23.571669 | celery | anther | W99B-r3 | maintainer line | |
| PRJNA884180 | SRX17743889 | 15.470337 | var. secalinum Yablochny | collenchyma | Col_S1_rep1-1 | ||
| PRJNA884180 | SRX17748056 | 13.40662 | var. secalinum Yablochny | collenchyma | Col_S1_rep3 | biological replicate 3 | |
| PRJNA884180 | SRX17748057 | 14.515692 | var. secalinum Yablochny | collenchyma | Col_S1_rep4 | biological replicate 4 | |
| PRJNA884180 | SRX17748678 | 28.149057 | var. secalinum Yablochny | parenchyma | Par_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17748679 | 24.148401 | var. secalinum Yablochny | parenchyma | Par_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17748680 | 21.511963 | var. secalinum Yablochny | parenchyma | Par_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17748681 | 29.973694 | var. secalinum Yablochny | parenchyma | Par_S1_rep4 | Biological replicate 4 | |
| PRJNA884180 | SRX17748898 | 19.551392 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17748899 | 17.516251 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17748900 | 13.80022 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17748901 | 17.150562 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep4 | Biological replicate 4 | |
| PRJNA884180 | SRX17749129 | 31.687046 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17749130 | 20.449329 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17749131 | 25.620588 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17749132 | 24.829647 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep4 | Biological replicate 4 | |
| PRJNA1124269 | SRX24936411 | 11.050891 | leaf | CK1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936412 | 13.75912 | leaf | CK2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936413 | 8.0774 | leaf | CK3 | replicate=biological replicate3 | ||
| PRJNA1124269 | SRX24936414 | 13.696703 | leaf | D1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936415 | 8.543021 | leaf | D2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936416 | 17.58835 | leaf | D3 | replicate=biological replicate3 | ||
| PRJNA1124269 | SRX24936417 | 8.784301 | leaf | MD1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936418 | 6.961574 | leaf | MD2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936419 | 7.970957 | leaf | MD3 | replicate=biological replicate3 | ||
| PRJNA387092 | SRX2833309 | 22.352211 | shanghaihuangxin | leaf | leaves between 0.5 and 1 cm in breadth, folded; | stage 2 | |
| PRJNA387092 | SRX2833321 | 26.790398 | shanghaihuangxin | leaf | leaves between 2and 2.5 cm in breadth, nearly unfolded, with clear stem exten-sion | stage 5 | |
| PRJNA387092 | SRX2833323 | 21.206564 | shanghaihuangxin | leaf | leaves >3 cm, unfolded, with clearstem extension | stage 7 | |
| PRJNA543957 | SRX5879598 | 21.847588 | Zhangzhou lvqing | stem | Se3 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879599 | 35.968803 | Zhangzhou lvqing | stem | Se2 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879600 | 42.585735 | Zhangzhou lvqing | stem | Mock2 | mock | |
| PRJNA543957 | SRX5879601 | 46.849144 | Zhangzhou lvqing | stem | Mock1 | mock | |
| PRJNA543957 | SRX5879602 | 22.20525 | Zhangzhou lvqing | stem | Se1 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879603 | 38.308388 | Zhangzhou lvqing | stem | Mock3 | mock | |
| PRJNA609149 | SRX7815917 | 11.277101 | Jinnan Shiqin | flower bud | early flower bud | early flower bud | |
| PRJNA609149 | SRX7815918 | 11.047181 | Jinnan Shiqin | flower bud | middle flower bud | middle flower bud | |
| PRJNA609149 | SRX7815919 | 12.178125 | Jinnan Shiqin | flower bud | early flowering period | early flowering period |
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Acanthaceae | Avicennia marina | 5 | jg23535, jg37040, jg4738, jg4739, jg7681 |
| Aizoaceae | Mesembryanthemum crystallinum | 1 | gene_1777 |
| Amaranthaceae | Atriplex hortensis | 1 | Ah004490 |
| Amaranthaceae | Beta vulgaris | 2 | BVRB_5g099300, BVRB_5g099310 |
| Amaranthaceae | Salicornia bigelovii | 4 | Sbi_jg23998, Sbi_jg23999, Sbi_jg7827, Sbi_jg7828 |
| Amaranthaceae | Salicornia europaea | 2 | Seu_jg12204, Seu_jg12205 |
| Amaranthaceae | Suaeda aralocaspica | 2 | GOSA_00001088, GOSA_00001089 |
| Amaranthaceae | Suaeda glauca | 4 | Sgl52162, Sgl52163, Sgl57432, Sgl57435 |
| Amaranthaceae | Chenopodium album | 6 | gene:ENSEOMG00000004097, gene:ENSEOMG00000005494 ... |
| Amaranthaceae | Chenopodium quinoa | 3 | CQ.Regalona.r1.5AG0006170, CQ.Regalona.r1.5AG0006180 ... |
| Anacardiaceae | Pistacia vera | 1 | pistato.v30134800 |
| Apiaceae | Apium graveolens | 3 | Ag11G05075, Ag6G01681, Ag7G00643 |
| Asteraceae | Flaveria trinervia | 4 | Ftri13G22822, Ftri14G09583, Ftri2G05629, Ftri3G14520 |
| Brassicaceae | Arabidopsis thaliana | 4 | AT1G64320.1, AT1G64330.1, AT5G41780.1, AT5G41790.1 |
| Brassicaceae | Eutrema salsugineum | 4 | Thhalv10023387m.g.v1.0, Thhalv10024082m.g.v1.0 ... |
| Brassicaceae | Schrenkiella parvula | 4 | Sp2g00430.v2.2, Sp2g00440.v2.2, Sp7g00300.v2.2 ... |
| Brassicaceae | Brassica nigra | 5 | BniB01g024410.2N, BniB04g022750.2N, BniB04g022760.2N ... |
| Casuarinaceae | Casuarina equisetifolia | 1 | Ceq03G0194 |
| Casuarinaceae | Casuarina glauca | 2 | Cgl03G0220, Cgl03G0243 |
| Hydrocharitaceae | Thalassia testudinum | 1 | gene.Thate03g17960 |
| Malvaceae | Hibiscus hamabo Siebold & Zucc. | 2 | nbisL1-mrna-2124, nbisL1-mrna-2125 |
| Nitrariaceae | Nitraria sibirica | 2 | evm.TU.LG10.1507, evm.TU.LG10.1508 |
| Plantaginaceae | Plantago ovata | 5 | Pov_00005338, Pov_00028436, Pov_00028437, Pov_00028438 ... |
| Plumbaginaceae | Limonium bicolor | 5 | Lb2G08262, Lb2G08265, Lb2G08266, Lb4G24244, Lb4G24245 |
| Portulacaceae | Portulaca oleracea | 7 | evm.TU.Contig36.2, evm.TU.Contig40.1, evm.TU.LG04.3291 ... |
| Rhizophoraceae | Bruguiera sexangula | 3 | evm.TU.Scaffold_14_RagTag.125, evm.TU.Scaffold_14_RagTag.127 ... |
| Rhizophoraceae | Carallia pectinifolia | 2 | nbisL1-mrna-18284, nbisL1-mrna-18285 |
| Rhizophoraceae | Ceriops tagal | 3 | nbisL1-mrna-2884, nbisL1-mrna-2885, nbisL1-mrna-4387 |
| Rhizophoraceae | Ceriops zippeliana | 3 | nbisL1-mrna-20379, nbisL1-mrna-8607, nbisL1-mrna-8608 |
| Rhizophoraceae | Kandelia candel | 3 | add.evm.TU.utg000007l.170, add.evm.TU.utg000022l.241 ... |
| Rhizophoraceae | Kandelia obovata | 2 | Maker00014226, Maker00018400 |
| Rhizophoraceae | Rhizophora apiculata | 3 | nbisL1-mrna-15983, nbisL1-mrna-23201, nbisL1-mrna-3572 |
| Rhizophoraceae | Rhizophora mangle | 3 | nbisL1-mrna-10971, nbisL1-mrna-10973, nbisL1-mrna-6742 |
| Salicaceae | Populus euphratica | 8 | populus_peu03658, populus_peu03660, populus_peu34507 ... |
| Solanaceae | Lycium barbarum | 3 | gene-LOC132602431, gene-LOC132608775, gene-LOC132634814 |
| Solanaceae | Solanum chilense | 3 | SOLCI002865100, SOLCI004793100, SOLCI005177000 |
| Solanaceae | Solanum pennellii | 3 | gene-LOC107006870, gene-LOC107027410, gene-LOC107028391 |
| Tamaricaceae | Reaumuria soongarica | 2 | STRG.23355_chr05_-, STRG.23356_chr05_- |
| Tamaricaceae | Tamarix chinensis | 3 | TC01G4256, TC01G4257, TC02G0609 |
| Zosteraceae | Zostera marina | 1 | Zosma01g06340.v3.1 |