halophFGD

Basic Information

Locus ID: Ag11G05059

Species & Taxonomic ID: Apium graveolens & 4045

Genome Assembly: GCA_009905375.1

Description: RING-H2 finger protein

Maps and Mapping Data

Chromosome	Start	End	Strand	ID
chr11	206203457	206208112	+	Ag11G05059

Protein Data

Protein Properties:

Theoretical pI	Molecular Weight	Instability Index	Aliphatic Index	GRAVY
8.08	67,873.29 Da	48.08	80.21	0.00

Protein Domain:

Category	ID	Description	Start	End	Evalue/Score	InterPro ID
CDD	cd16454	RING-H2_PA-TM-RING	554	597	4.85972E-18	-
Pfam	PF13947	Wall-associated receptor kinase galacturonan-binding	342	398	2.7E-13	IPR025287
Pfam	PF13947	Wall-associated receptor kinase galacturonan-binding	27	89	8.2E-17	IPR025287
Pfam	PF13639	Ring finger domain	554	597	6.4E-13	IPR001841
SUPERFAMILY	SSF57850	RING/U-box	548	598	6.1E-20	-
Gene3D	G3DSA:3.30.40.10	Zinc/RING finger domain, C3HC4 (zinc finger)	525	601	1.7E-20	IPR013083
SMART	SM00184	ring_2	555	596	1.5E-7	IPR001841
ProSiteProfiles	PS50089	Zinc finger RING-type profile.	555	597	13.064645	IPR001841

Gene Ontology

Molecular Function:

GO:0030247 (polysaccharide binding)

KEGG Pathway

KO Term:

K19041 (E3 ubiquitin-protein ligase RNF38/44 [EC:2.3.2.27])

Best hit

Source	Best Hit ID	Description
TAIR	AT5G53110.1	RING/U-box superfamily protein.
RefSeq	XP_017228321.1	PREDICTED: RING-H2 finger protein ATL20-like isoform X1 [Daucus carota subsp. sativus]
Swiss-Prot	Q9C7E9	RING-H2 finger protein ATL20 OS=Arabidopsis thaliana OX=3702 GN=ATL20 PE=2 SV=2
TrEMBL	A0A175YC36	RING-type domain-containing protein OS=Daucus carota subsp. sativus OX=79200 GN=DCAR_031725 PE=4 SV=1

Expression

BioProject	Accession	TPM	Cultivar	Tissue	Development Stage	Sample Name	Description
PRJNA723697	SRX10692252	0.950098	Shengqin NO.2	seed	S1-1	S1-1	initial formation stage (S1)
PRJNA723697	SRX10692254	1.198655	Shengqin NO.2	seed	S1-3	S1-3	initial formation stage (S1)
PRJNA723697	SRX10692255	0.649522	Shengqin NO.2	seed	S3-1	S3-1	middle development stage (S3)
PRJNA723697	SRX10692256	0.74426	Shengqin NO.2	seed	S3-2	S3-2	middle development stage (S3)
PRJNA723697	SRX10692257	0.79774	Shengqin NO.2	seed	S3-3	S3-3	middle development stage (S3)
PRJNA723697	SRX10692258	2.378269	Shengqin NO.2	seed	S5-1	S5-1	maturation stage (S5)
PRJNA723697	SRX10692259	1.214085	Shengqin NO.2	seed	S5-2	S5-2	maturation stage (S5)
PRJNA723697	SRX10692260	0.926769	Shengqin NO.2	seed	S5-3	S5-3	maturation stage (S5)
PRJNA884666	SRX17729272	0.400993	celery	anther		W99A-r1	male sterile lineÂ
PRJNA884666	SRX17729273	0.535569	celery	anther		W99A-r2	male sterile lineÂ
PRJNA884666	SRX17729274	0.348501	celery	anther		W99A-r3	male sterile lineÂ
PRJNA884666	SRX17729275	0.404382	celery	anther		W99B-r1	maintainer line
PRJNA884666	SRX17729276	0.73881	celery	anther		W99B-r2	maintainer line
PRJNA884666	SRX17729277	0.392135	celery	anther		W99B-r3	maintainer line
PRJNA884180	SRX17743889	0.372437	var. secalinum Yablochny	collenchyma		Col_S1_rep1-1
PRJNA884180	SRX17748056	0.281508	var. secalinum Yablochny	collenchyma		Col_S1_rep3	biological replicate 3
PRJNA884180	SRX17748057	0.129898	var. secalinum Yablochny	collenchyma		Col_S1_rep4	biological replicate 4
PRJNA884180	SRX17748678	2.467034	var. secalinum Yablochny	parenchyma		Par_S1_rep1	Biological replicate 1
PRJNA884180	SRX17748679	0.721518	var. secalinum Yablochny	parenchyma		Par_S1_rep2	Biological replicate 2
PRJNA884180	SRX17748680	16.96468	var. secalinum Yablochny	parenchyma		Par_S1_rep3	Biological replicate 3
PRJNA884180	SRX17748681	12.651736	var. secalinum Yablochny	parenchyma		Par_S1_rep4	Biological replicate 4
PRJNA884180	SRX17748898	0.166414	var. secalinum Yablochny	vascular bundle		Vas_S1_rep1	Biological replicate 1
PRJNA884180	SRX17748899	0.316639	var. secalinum Yablochny	vascular bundle		Vas_S1_rep2	Biological replicate 2
PRJNA884180	SRX17748900	0.131826	var. secalinum Yablochny	vascular bundle		Vas_S1_rep3	Biological replicate 3
PRJNA884180	SRX17748901	0	var. secalinum Yablochny	vascular bundle		Vas_S1_rep4	Biological replicate 4
PRJNA884180	SRX17749129	0.103622	var. secalinum Yablochny	part of the celery petiole without collenchyma strands		Collenchyma-free_S1_rep1	Biological replicate 1
PRJNA884180	SRX17749130	0	var. secalinum Yablochny	part of the celery petiole without collenchyma strands		Collenchyma-free_S1_rep2	Biological replicate 2
PRJNA884180	SRX17749131	0.453044	var. secalinum Yablochny	part of the celery petiole without collenchyma strands		Collenchyma-free_S1_rep3	Biological replicate 3
PRJNA884180	SRX17749132	0	var. secalinum Yablochny	part of the celery petiole without collenchyma strands		Collenchyma-free_S1_rep4	Biological replicate 4
PRJNA1124269	SRX24936411	6.167604		leaf		CK1	replicate=biological replicate1
PRJNA1124269	SRX24936412	4.484235		leaf		CK2	replicate=biological replicate2
PRJNA1124269	SRX24936413	3.698235		leaf		CK3	replicate=biological replicate3
PRJNA1124269	SRX24936414	10.068357		leaf		D1	replicate=biological replicate1
PRJNA1124269	SRX24936415	5.0576		leaf		D2	replicate=biological replicate2
PRJNA1124269	SRX24936416	8.122705		leaf		D3	replicate=biological replicate3
PRJNA1124269	SRX24936417	15.687255		leaf		MD1	replicate=biological replicate1
PRJNA1124269	SRX24936418	8.565425		leaf		MD2	replicate=biological replicate2
PRJNA1124269	SRX24936419	13.218241		leaf		MD3	replicate=biological replicate3
PRJNA387092	SRX2833309	0.507295	shanghaihuangxin	leaf	leaves between 0.5 and 1 cm in breadth, folded;	stage 2
PRJNA387092	SRX2833321	3.248434	shanghaihuangxin	leaf	leaves between 2and 2.5 cm in breadth, nearly unfolded, with clear stem exten-sion	stage 5
PRJNA387092	SRX2833323	5.960267	shanghaihuangxin	leaf	leaves >3 cm, unfolded, with clearstem extension	stage 7
PRJNA543957	SRX5879598	27.621655	Zhangzhou lvqing	stem		Se3	100 ppm Na2SeO4
PRJNA543957	SRX5879599	3.219519	Zhangzhou lvqing	stem		Se2	100 ppm Na2SeO4
PRJNA543957	SRX5879600	2.212385	Zhangzhou lvqing	stem		Mock2	mock
PRJNA543957	SRX5879601	1.769551	Zhangzhou lvqing	stem		Mock1	mock
PRJNA543957	SRX5879602	22.970581	Zhangzhou lvqing	stem		Se1	100 ppm Na2SeO4
PRJNA543957	SRX5879603	0.500661	Zhangzhou lvqing	stem		Mock3	mock
PRJNA609149	SRX7815917	0.267055	Jinnan Shiqin	flower bud	early flower bud	early flower bud
PRJNA609149	SRX7815918	0.352601	Jinnan Shiqin	flower bud	middle flower bud	middle flower bud
PRJNA609149	SRX7815919	0.617714	Jinnan Shiqin	flower bud	early flowering period	early flowering period

Network

🔍 Co-expression Network

🔍 Protein-Protein Interaction Network

Orthology

Family	Species	Count	Orthologous Genes
Acanthaceae	Avicennia marina	7	jg10251, jg13896, jg2005, jg23556, jg37312, jg4724, jg4863
Aizoaceae	Mesembryanthemum crystallinum	10	gene_16209, gene_16210, gene_2231, gene_23548, gene_3286 ... gene_3290, gene_3291, gene_3292, gene_3293, gene_3294
Amaranthaceae	Atriplex hortensis	8	Ah003873, Ah018649, Ah018655, Ah018658, Ah018666, Ah018667 ... Ah018677, Ah022861
Amaranthaceae	Beta vulgaris	4	BVRB_1g003160, BVRB_3g052260, BVRB_3g052270, BVRB_5g098830
Amaranthaceae	Salicornia bigelovii	11	Sbi_jg15109, Sbi_jg15118, Sbi_jg15119, Sbi_jg24032 ... Sbi_jg3961, Sbi_jg49174, Sbi_jg55943, Sbi_jg55947, Sbi_jg55952, Sbi_jg55953, Sbi_jg7879
Amaranthaceae	Salicornia europaea	7	Seu_jg12165, Seu_jg26423, Seu_jg26425, Seu_jg26426 ... Seu_jg26430, Seu_jg26431, Seu_jg6069
Amaranthaceae	Suaeda aralocaspica	10	GOSA_00000576, GOSA_00010640, GOSA_00020030, GOSA_00020031 ... GOSA_00020033, GOSA_00020036, GOSA_00020038, GOSA_00020040, GOSA_00020041, GOSA_00025367
Amaranthaceae	Suaeda glauca	19	Sgl01377, Sgl01385, Sgl01386, Sgl01445, Sgl06451, Sgl06461 ... Sgl06462, Sgl06532, Sgl06543, Sgl06544, Sgl10915, Sgl16269, Sgl34867, Sgl40264, Sgl52209, Sgl52232, Sgl53358, Sgl57481, Sgl58621
Amaranthaceae	Chenopodium album	10	gene:ENSEOMG00000000507, gene:ENSEOMG00000000873 ... gene:ENSEOMG00000015370, gene:ENSEOMG00000022583, gene:ENSEOMG00000024572, gene:ENSEOMG00000032266, gene:ENSEOMG00000032403, gene:ENSEOMG00000035807, gene:ENSEOMG00000043538, gene:ENSEOMG00000045066
Amaranthaceae	Chenopodium quinoa	12	CQ.Regalona.r1.1AG0002100, CQ.Regalona.r1.2BG0026160 ... CQ.Regalona.r1.3AG0004660, CQ.Regalona.r1.3AG0004710, CQ.Regalona.r1.3AG0004820, CQ.Regalona.r1.3AG0004850, CQ.Regalona.r1.3BG0004780, CQ.Regalona.r1.3BG0004810, CQ.Regalona.r1.3BG0004860, CQ.Regalona.r1.3BG0004900, CQ.Regalona.r1.5AG0005820, CQ.Regalona.r1.5BG0006150
Anacardiaceae	Pistacia vera	6	pistato.v30005750, pistato.v30043600, pistato.v30134390 ... pistato.v30185150, pistato.v30215830, pistato.v30216680
Apiaceae	Apium graveolens	5	Ag11G05058, Ag11G05059, Ag6G01552, Ag6G02066, Ag7G01464
Asteraceae	Flaveria trinervia	7	Ftri11G17799, Ftri14G08304, Ftri14G29919, Ftri15G01300 ... Ftri2G17479, Ftri3G21947, Ftri7G05743
Brassicaceae	Arabidopsis thaliana	6	AT1G28040.1, AT2G25410.1, AT2G46494.1, AT2G46495.1 ... AT5G36001.1, AT5G53110.1
Brassicaceae	Eutrema salsugineum	3	Thhalv10001500m.g.v1.0, Thhalv10006034m.g.v1.0 ... Thhalv10013815m.g.v1.0
Brassicaceae	Schrenkiella parvula	5	Sp1g24210.v2.2, Sp1g24220.v2.2, Sp4g28500.v2.2 ... Sp5g01650.v2.2, Sp6g15280.v2.2
Brassicaceae	Brassica nigra	8	BniB01g000960.2N, BniB01g000970.2N, BniB01g000980.2N ... BniB02g031240.2N, BniB05g033040.2N, BniB06g061860.2N, BniB08g075930.2N, BniS06172g270.2N
Casuarinaceae	Casuarina equisetifolia	5	Ceq02G1260, Ceq03G0577, Ceq03G0578, Ceq03G0716, Ceq09G1593
Casuarinaceae	Casuarina glauca	3	Cgl02G1300, Cgl03G0684, Cgl03G0815
Malvaceae	Hibiscus hamabo Siebold & Zucc.	3	nbisL1-mrna-11276, nbisL1-mrna-6155, nbisL1-mrna-9535
Nitrariaceae	Nitraria sibirica	5	evm.TU.LG01.2893, evm.TU.LG10.1534, evm.TU.LG10.1537 ... evm.TU.LG10.1538, evm.TU.LG10.1539
Plantaginaceae	Plantago ovata	8	Pov_00004151, Pov_00005380, Pov_00005381, Pov_00005382 ... Pov_00006892, Pov_00010757, Pov_00020674, Pov_00041137
Plumbaginaceae	Limonium bicolor	4	Lb1G03661, Lb4G22028, Lb6G31391, Lb6G31392
Portulacaceae	Portulaca oleracea	14	evm.TU.LG01.1526, evm.TU.LG01.1527, evm.TU.LG04.2157 ... evm.TU.LG04.2158, evm.TU.LG04.3272, evm.TU.LG06.150, evm.TU.LG06.151, evm.TU.LG10.104, evm.TU.LG14.783, evm.TU.LG14.784, evm.TU.LG16.329, evm.TU.LG17.104, evm.TU.LG19.1276, evm.TU.LG24.1275
Rhizophoraceae	Bruguiera sexangula	5	evm.TU.Scaffold_14_RagTag.105, evm.TU.Scaffold_14_RagTag.384 ... evm.TU.Scaffold_16_RagTag.80, evm.TU.Scaffold_2_RagTag.1649, evm.TU.Scaffold_4258_RagTag.1
Rhizophoraceae	Carallia pectinifolia	5	nbisL1-mrna-10738, nbisL1-mrna-17971, nbisL1-mrna-18302 ... nbisL1-mrna-22328, nbisL1-mrna-3558
Rhizophoraceae	Ceriops tagal	3	nbisL1-mrna-20135, nbisL1-mrna-2898, nbisL1-mrna-4367
Rhizophoraceae	Ceriops zippeliana	2	nbisL1-mrna-20402, nbisL1-mrna-8335
Rhizophoraceae	Kandelia candel	5	add.evm.TU.utg000022l.250, evm.TU.utg000007l.134 ... evm.TU.utg000007l.333, evm.TU.utg000009l.313, evm.TU.utg000010l.436
Rhizophoraceae	Kandelia obovata	4	Maker00005977, Maker00009012, Maker00018335, Maker00018602
Rhizophoraceae	Rhizophora apiculata	5	nbisL1-mrna-15968, nbisL1-mrna-16167, nbisL1-mrna-17173 ... nbisL1-mrna-18186, nbisL1-mrna-2743
Rhizophoraceae	Rhizophora mangle	4	nbisL1-mrna-10711, nbisL1-mrna-10992, nbisL1-mrna-20499 ... nbisL1-mrna-6765
Salicaceae	Populus euphratica	8	populus_peu03685, populus_peu27566, populus_peu28069 ... populus_peu28072, populus_peu29505, populus_peu31563, populus_peu33916, populus_peu34533
Solanaceae	Lycium barbarum	7	gene-LOC132599973, gene-LOC132599974, gene-LOC132626353 ... gene-LOC132632061, gene-LOC132634063, gene-LOC132634789, gene-LOC132635153
Solanaceae	Solanum chilense	2	SOLCI002563300, SOLCI003475600
Solanaceae	Solanum pennellii	7	gene-LOC107012750, gene-LOC107025285, gene-LOC107027193 ... gene-LOC107028283, gene-LOC107030047, gene-LOC107030693, gene-LOC107031909
Tamaricaceae	Reaumuria soongarica	4	STRG.23332_chr05_+, gene_5255, gene_5256, gene_733
Tamaricaceae	Tamarix chinensis	6	TC01G3064, TC03G1953, TC06G0101, TC06G2510, TC10G1796 ... TC10G1797