halophFGD

Basic Information

Locus ID: Ag11G05058

Species & Taxonomic ID: Apium graveolens & 4045

Genome Assembly: GCA_009905375.1

Description: Anaphase-promoting complex subunit 11 RING-H2 finger

Maps and Mapping Data

Chromosome	Start	End	Strand	ID
chr11	206199695	206202708	+	Ag11G05058

Protein Data

Protein Properties:

Theoretical pI	Molecular Weight	Instability Index	Aliphatic Index	GRAVY
6.17	41,515.90 Da	43.10	80.88	-0.04

Protein Domain:

Category	ID	Description	Start	End	Evalue/Score	InterPro ID
CDD	cd16454	RING-H2_PA-TM-RING	307	350	1.47516E-17	-
Pfam	PF13639	Ring finger domain	307	350	3.3E-13	IPR001841
Pfam	PF13947	Wall-associated receptor kinase galacturonan-binding	29	93	1.0E-16	IPR025287
SUPERFAMILY	SSF57850	RING/U-box	300	351	1.12E-20	-
Gene3D	G3DSA:3.30.40.10	Zinc/RING finger domain, C3HC4 (zinc finger)	275	354	6.6E-21	IPR013083
SMART	SM00184	ring_2	308	349	4.2E-7	IPR001841
ProSiteProfiles	PS50089	Zinc finger RING-type profile.	308	350	12.976127	IPR001841
MobiDBLite	mobidb-lite	consensus disorder prediction	360	377	-	-
MobiDBLite	mobidb-lite	consensus disorder prediction	357	377	-	-

Gene Ontology

Molecular Function:

GO:0030247 (polysaccharide binding)

KEGG Pathway

KO Term:

K19041 (E3 ubiquitin-protein ligase RNF38/44 [EC:2.3.2.27])

Best hit

Source	Best Hit ID	Description
TAIR	AT5G53110.1	RING/U-box superfamily protein.
RefSeq	XP_017228321.1	PREDICTED: RING-H2 finger protein ATL20-like isoform X1 [Daucus carota subsp. sativus]
Swiss-Prot	P0CH01	Putative RING-H2 finger protein ATL21A OS=Arabidopsis thaliana OX=3702 GN=ATL21A PE=3 SV=1
TrEMBL	A0A175YC36	RING-type domain-containing protein OS=Daucus carota subsp. sativus OX=79200 GN=DCAR_031725 PE=4 SV=1

Expression

BioProject	Accession	TPM	Cultivar	Tissue	Development Stage	Sample Name	Description
PRJNA723697	SRX10692252	2.430248	Shengqin NO.2	seed	S1-1	S1-1	initial formation stage (S1)
PRJNA723697	SRX10692254	5.174642	Shengqin NO.2	seed	S1-3	S1-3	initial formation stage (S1)
PRJNA723697	SRX10692255	2.239197	Shengqin NO.2	seed	S3-1	S3-1	middle development stage (S3)
PRJNA723697	SRX10692256	3.304672	Shengqin NO.2	seed	S3-2	S3-2	middle development stage (S3)
PRJNA723697	SRX10692257	2.825523	Shengqin NO.2	seed	S3-3	S3-3	middle development stage (S3)
PRJNA723697	SRX10692258	5.913738	Shengqin NO.2	seed	S5-1	S5-1	maturation stage (S5)
PRJNA723697	SRX10692259	3.167911	Shengqin NO.2	seed	S5-2	S5-2	maturation stage (S5)
PRJNA723697	SRX10692260	1.391568	Shengqin NO.2	seed	S5-3	S5-3	maturation stage (S5)
PRJNA884666	SRX17729272	3.105583	celery	anther		W99A-r1	male sterile lineÂ
PRJNA884666	SRX17729273	2.568099	celery	anther		W99A-r2	male sterile lineÂ
PRJNA884666	SRX17729274	3.640432	celery	anther		W99A-r3	male sterile lineÂ
PRJNA884666	SRX17729275	1.231982	celery	anther		W99B-r1	maintainer line
PRJNA884666	SRX17729276	2.655699	celery	anther		W99B-r2	maintainer line
PRJNA884666	SRX17729277	2.741654	celery	anther		W99B-r3	maintainer line
PRJNA884180	SRX17743889	0.582641	var. secalinum Yablochny	collenchyma		Col_S1_rep1-1
PRJNA884180	SRX17748056	0.395339	var. secalinum Yablochny	collenchyma		Col_S1_rep3	biological replicate 3
PRJNA884180	SRX17748057	0.329689	var. secalinum Yablochny	collenchyma		Col_S1_rep4	biological replicate 4
PRJNA884180	SRX17748678	1.559743	var. secalinum Yablochny	parenchyma		Par_S1_rep1	Biological replicate 1
PRJNA884180	SRX17748679	1.002214	var. secalinum Yablochny	parenchyma		Par_S1_rep2	Biological replicate 2
PRJNA884180	SRX17748680	11.163781	var. secalinum Yablochny	parenchyma		Par_S1_rep3	Biological replicate 3
PRJNA884180	SRX17748681	11.029759	var. secalinum Yablochny	parenchyma		Par_S1_rep4	Biological replicate 4
PRJNA884180	SRX17748898	0	var. secalinum Yablochny	vascular bundle		Vas_S1_rep1	Biological replicate 1
PRJNA884180	SRX17748899	0	var. secalinum Yablochny	vascular bundle		Vas_S1_rep2	Biological replicate 2
PRJNA884180	SRX17748900	0.146535	var. secalinum Yablochny	vascular bundle		Vas_S1_rep3	Biological replicate 3
PRJNA884180	SRX17748901	0.391387	var. secalinum Yablochny	vascular bundle		Vas_S1_rep4	Biological replicate 4
PRJNA884180	SRX17749129	0.400901	var. secalinum Yablochny	part of the celery petiole without collenchyma strands		Collenchyma-free_S1_rep1	Biological replicate 1
PRJNA884180	SRX17749130	0.264789	var. secalinum Yablochny	part of the celery petiole without collenchyma strands		Collenchyma-free_S1_rep2	Biological replicate 2
PRJNA884180	SRX17749131	0.7314	var. secalinum Yablochny	part of the celery petiole without collenchyma strands		Collenchyma-free_S1_rep3	Biological replicate 3
PRJNA884180	SRX17749132	0.053529	var. secalinum Yablochny	part of the celery petiole without collenchyma strands		Collenchyma-free_S1_rep4	Biological replicate 4
PRJNA1124269	SRX24936411	11.662464		leaf		CK1	replicate=biological replicate1
PRJNA1124269	SRX24936412	6.01864		leaf		CK2	replicate=biological replicate2
PRJNA1124269	SRX24936413	5.268456		leaf		CK3	replicate=biological replicate3
PRJNA1124269	SRX24936414	57.712078		leaf		D1	replicate=biological replicate1
PRJNA1124269	SRX24936415	25.115889		leaf		D2	replicate=biological replicate2
PRJNA1124269	SRX24936416	66.03968		leaf		D3	replicate=biological replicate3
PRJNA1124269	SRX24936417	36.662842		leaf		MD1	replicate=biological replicate1
PRJNA1124269	SRX24936418	31.104401		leaf		MD2	replicate=biological replicate2
PRJNA1124269	SRX24936419	38.132694		leaf		MD3	replicate=biological replicate3
PRJNA387092	SRX2833309	1.906456	shanghaihuangxin	leaf	leaves between 0.5 and 1 cm in breadth, folded;	stage 2
PRJNA387092	SRX2833321	24.403761	shanghaihuangxin	leaf	leaves between 2and 2.5 cm in breadth, nearly unfolded, with clear stem exten-sion	stage 5
PRJNA387092	SRX2833323	24.812456	shanghaihuangxin	leaf	leaves >3 cm, unfolded, with clearstem extension	stage 7
PRJNA543957	SRX5879598	49.425682	Zhangzhou lvqing	stem		Se3	100 ppm Na2SeO4
PRJNA543957	SRX5879599	26.492844	Zhangzhou lvqing	stem		Se2	100 ppm Na2SeO4
PRJNA543957	SRX5879600	8.467859	Zhangzhou lvqing	stem		Mock2	mock
PRJNA543957	SRX5879601	2.352052	Zhangzhou lvqing	stem		Mock1	mock
PRJNA543957	SRX5879602	46.091724	Zhangzhou lvqing	stem		Se1	100 ppm Na2SeO4
PRJNA543957	SRX5879603	1.599803	Zhangzhou lvqing	stem		Mock3	mock
PRJNA609149	SRX7815917	0.74466	Jinnan Shiqin	flower bud	early flower bud	early flower bud
PRJNA609149	SRX7815918	1.710454	Jinnan Shiqin	flower bud	middle flower bud	middle flower bud
PRJNA609149	SRX7815919	0.549586	Jinnan Shiqin	flower bud	early flowering period	early flowering period

Network

🔍 Co-expression Network

🔍 Protein-Protein Interaction Network

Orthology

Family	Species	Count	Orthologous Genes
Acanthaceae	Avicennia marina	7	jg10251, jg13896, jg2005, jg23556, jg37312, jg4724, jg4863
Aizoaceae	Mesembryanthemum crystallinum	10	gene_16209, gene_16210, gene_2231, gene_23548, gene_3286 ... gene_3290, gene_3291, gene_3292, gene_3293, gene_3294
Amaranthaceae	Atriplex hortensis	8	Ah003873, Ah018649, Ah018655, Ah018658, Ah018666, Ah018667 ... Ah018677, Ah022861
Amaranthaceae	Beta vulgaris	4	BVRB_1g003160, BVRB_3g052260, BVRB_3g052270, BVRB_5g098830
Amaranthaceae	Salicornia bigelovii	11	Sbi_jg15109, Sbi_jg15118, Sbi_jg15119, Sbi_jg24032 ... Sbi_jg3961, Sbi_jg49174, Sbi_jg55943, Sbi_jg55947, Sbi_jg55952, Sbi_jg55953, Sbi_jg7879
Amaranthaceae	Salicornia europaea	7	Seu_jg12165, Seu_jg26423, Seu_jg26425, Seu_jg26426 ... Seu_jg26430, Seu_jg26431, Seu_jg6069
Amaranthaceae	Suaeda aralocaspica	10	GOSA_00000576, GOSA_00010640, GOSA_00020030, GOSA_00020031 ... GOSA_00020033, GOSA_00020036, GOSA_00020038, GOSA_00020040, GOSA_00020041, GOSA_00025367
Amaranthaceae	Suaeda glauca	19	Sgl01377, Sgl01385, Sgl01386, Sgl01445, Sgl06451, Sgl06461 ... Sgl06462, Sgl06532, Sgl06543, Sgl06544, Sgl10915, Sgl16269, Sgl34867, Sgl40264, Sgl52209, Sgl52232, Sgl53358, Sgl57481, Sgl58621
Amaranthaceae	Chenopodium album	10	gene:ENSEOMG00000000507, gene:ENSEOMG00000000873 ... gene:ENSEOMG00000015370, gene:ENSEOMG00000022583, gene:ENSEOMG00000024572, gene:ENSEOMG00000032266, gene:ENSEOMG00000032403, gene:ENSEOMG00000035807, gene:ENSEOMG00000043538, gene:ENSEOMG00000045066
Amaranthaceae	Chenopodium quinoa	12	CQ.Regalona.r1.1AG0002100, CQ.Regalona.r1.2BG0026160 ... CQ.Regalona.r1.3AG0004660, CQ.Regalona.r1.3AG0004710, CQ.Regalona.r1.3AG0004820, CQ.Regalona.r1.3AG0004850, CQ.Regalona.r1.3BG0004780, CQ.Regalona.r1.3BG0004810, CQ.Regalona.r1.3BG0004860, CQ.Regalona.r1.3BG0004900, CQ.Regalona.r1.5AG0005820, CQ.Regalona.r1.5BG0006150
Anacardiaceae	Pistacia vera	6	pistato.v30005750, pistato.v30043600, pistato.v30134390 ... pistato.v30185150, pistato.v30215830, pistato.v30216680
Apiaceae	Apium graveolens	5	Ag11G05058, Ag11G05059, Ag6G01552, Ag6G02066, Ag7G01464
Asteraceae	Flaveria trinervia	7	Ftri11G17799, Ftri14G08304, Ftri14G29919, Ftri15G01300 ... Ftri2G17479, Ftri3G21947, Ftri7G05743
Brassicaceae	Arabidopsis thaliana	6	AT1G28040.1, AT2G25410.1, AT2G46494.1, AT2G46495.1 ... AT5G36001.1, AT5G53110.1
Brassicaceae	Eutrema salsugineum	3	Thhalv10001500m.g.v1.0, Thhalv10006034m.g.v1.0 ... Thhalv10013815m.g.v1.0
Brassicaceae	Schrenkiella parvula	5	Sp1g24210.v2.2, Sp1g24220.v2.2, Sp4g28500.v2.2 ... Sp5g01650.v2.2, Sp6g15280.v2.2
Brassicaceae	Brassica nigra	8	BniB01g000960.2N, BniB01g000970.2N, BniB01g000980.2N ... BniB02g031240.2N, BniB05g033040.2N, BniB06g061860.2N, BniB08g075930.2N, BniS06172g270.2N
Casuarinaceae	Casuarina equisetifolia	5	Ceq02G1260, Ceq03G0577, Ceq03G0578, Ceq03G0716, Ceq09G1593
Casuarinaceae	Casuarina glauca	3	Cgl02G1300, Cgl03G0684, Cgl03G0815
Malvaceae	Hibiscus hamabo Siebold & Zucc.	3	nbisL1-mrna-11276, nbisL1-mrna-6155, nbisL1-mrna-9535
Nitrariaceae	Nitraria sibirica	5	evm.TU.LG01.2893, evm.TU.LG10.1534, evm.TU.LG10.1537 ... evm.TU.LG10.1538, evm.TU.LG10.1539
Plantaginaceae	Plantago ovata	8	Pov_00004151, Pov_00005380, Pov_00005381, Pov_00005382 ... Pov_00006892, Pov_00010757, Pov_00020674, Pov_00041137
Plumbaginaceae	Limonium bicolor	4	Lb1G03661, Lb4G22028, Lb6G31391, Lb6G31392
Portulacaceae	Portulaca oleracea	14	evm.TU.LG01.1526, evm.TU.LG01.1527, evm.TU.LG04.2157 ... evm.TU.LG04.2158, evm.TU.LG04.3272, evm.TU.LG06.150, evm.TU.LG06.151, evm.TU.LG10.104, evm.TU.LG14.783, evm.TU.LG14.784, evm.TU.LG16.329, evm.TU.LG17.104, evm.TU.LG19.1276, evm.TU.LG24.1275
Rhizophoraceae	Bruguiera sexangula	5	evm.TU.Scaffold_14_RagTag.105, evm.TU.Scaffold_14_RagTag.384 ... evm.TU.Scaffold_16_RagTag.80, evm.TU.Scaffold_2_RagTag.1649, evm.TU.Scaffold_4258_RagTag.1
Rhizophoraceae	Carallia pectinifolia	5	nbisL1-mrna-10738, nbisL1-mrna-17971, nbisL1-mrna-18302 ... nbisL1-mrna-22328, nbisL1-mrna-3558
Rhizophoraceae	Ceriops tagal	3	nbisL1-mrna-20135, nbisL1-mrna-2898, nbisL1-mrna-4367
Rhizophoraceae	Ceriops zippeliana	2	nbisL1-mrna-20402, nbisL1-mrna-8335
Rhizophoraceae	Kandelia candel	5	add.evm.TU.utg000022l.250, evm.TU.utg000007l.134 ... evm.TU.utg000007l.333, evm.TU.utg000009l.313, evm.TU.utg000010l.436
Rhizophoraceae	Kandelia obovata	4	Maker00005977, Maker00009012, Maker00018335, Maker00018602
Rhizophoraceae	Rhizophora apiculata	5	nbisL1-mrna-15968, nbisL1-mrna-16167, nbisL1-mrna-17173 ... nbisL1-mrna-18186, nbisL1-mrna-2743
Rhizophoraceae	Rhizophora mangle	4	nbisL1-mrna-10711, nbisL1-mrna-10992, nbisL1-mrna-20499 ... nbisL1-mrna-6765
Salicaceae	Populus euphratica	8	populus_peu03685, populus_peu27566, populus_peu28069 ... populus_peu28072, populus_peu29505, populus_peu31563, populus_peu33916, populus_peu34533
Solanaceae	Lycium barbarum	7	gene-LOC132599973, gene-LOC132599974, gene-LOC132626353 ... gene-LOC132632061, gene-LOC132634063, gene-LOC132634789, gene-LOC132635153
Solanaceae	Solanum chilense	2	SOLCI002563300, SOLCI003475600
Solanaceae	Solanum pennellii	7	gene-LOC107012750, gene-LOC107025285, gene-LOC107027193 ... gene-LOC107028283, gene-LOC107030047, gene-LOC107030693, gene-LOC107031909
Tamaricaceae	Reaumuria soongarica	4	STRG.23332_chr05_+, gene_5255, gene_5256, gene_733
Tamaricaceae	Tamarix chinensis	6	TC01G3064, TC03G1953, TC06G0101, TC06G2510, TC10G1796 ... TC10G1797