halophFGD

Basic Information

Locus ID: Ag11G04978

Species & Taxonomic ID: Apium graveolens & 4045

Genome Assembly: GCA_009905375.1

Description: E3 ubiquitin-protein ligase

Maps and Mapping Data

Chromosome	Start	End	Strand	ID
chr11	205192271	205201597	+	Ag11G04978

Protein Data

Protein Properties:

Theoretical pI	Molecular Weight	Instability Index	Aliphatic Index	GRAVY
5.83	101,404.34 Da	42.12	89.73	-0.15

Protein Domain:

Category	ID	Description	Start	End	Evalue/Score	InterPro ID
CDD	cd00078	HECTc	522	881	4.70024E-113	IPR000569
Pfam	PF00240	Ubiquitin family	83	154	7.8E-14	IPR000626
Pfam	PF00632	HECT-domain (ubiquitin-transferase)	572	875	9.8E-75	IPR000569
SUPERFAMILY	SSF54236	Ubiquitin-like	81	168	3.45E-17	IPR029071
SUPERFAMILY	SSF56204	Hect, E3 ligase catalytic domain	520	869	2.88E-97	IPR035983
Gene3D	G3DSA:3.30.2160.10	Hect, E3 ligase catalytic domain	643	725	9.4E-63	-
Gene3D	G3DSA:3.90.1750.10	Hect, E3 ligase catalytic domains	525	755	9.4E-63	-
Gene3D	G3DSA:3.30.2410.10	Hect, E3 ligase catalytic domain	767	881	1.0E-31	-
Gene3D	G3DSA:3.10.20.90	-	80	155	5.4E-18	-
SMART	SM00213	ubq_7	80	152	1.2E-11	IPR000626
SMART	SM00119	hect_3	541	881	7.4E-89	IPR000569
ProSiteProfiles	PS50053	Ubiquitin domain profile.	80	156	16.145668	IPR000626
ProSiteProfiles	PS50237	HECT domain profile.	543	883	69.247459	IPR000569
PRINTS	PR00348	Ubiquitin signature	133	154	2.9E-7	IPR019956
PRINTS	PR00348	Ubiquitin signature	112	132	2.9E-7	IPR019956
PRINTS	PR00348	Ubiquitin signature	91	111	2.9E-7	IPR019956

Gene Ontology

Molecular Function:

GO:0004842 (ubiquitin-protein transferase activity) GO:0005515 (protein binding)

KEGG Pathway

KO Term:

K10591 (E3 ubiquitin-protein ligase NEDD4 [EC:2.3.2.26])

Pathway:

ko04011 (MAPK signaling pathway - yeast) map04011 (MAPK signaling pathway - yeast) ko04120 (Ubiquitin mediated proteolysis) map04120 (Ubiquitin mediated proteolysis)

Best hit

Source	Best Hit ID	Description
TAIR	AT4G12570.1	ubiquitin protein ligase 5. Knock-out mutants showed accelerated senescence of leaves.
RefSeq	XP_017235602.1	PREDICTED: E3 ubiquitin-protein ligase UPL5 [Daucus carota subsp. sativus]
Swiss-Prot	Q9SU29	E3 ubiquitin-protein ligase UPL5 OS=Arabidopsis thaliana OX=3702 GN=UPL5 PE=1 SV=1
TrEMBL	A0A5B7A4B3	Putative E3 ubiquitin-protein ligase UPL5 OS=Davidia involucrata OX=16924 GN=Din_020645 PE=4 SV=1

Expression

BioProject	Accession	TPM	Cultivar	Tissue	Development Stage	Sample Name	Description
PRJNA723697	SRX10692252	46.112438	Shengqin NO.2	seed	S1-1	S1-1	initial formation stage (S1)
PRJNA723697	SRX10692254	25.799702	Shengqin NO.2	seed	S1-3	S1-3	initial formation stage (S1)
PRJNA723697	SRX10692255	30.771776	Shengqin NO.2	seed	S3-1	S3-1	middle development stage (S3)
PRJNA723697	SRX10692256	29.372175	Shengqin NO.2	seed	S3-2	S3-2	middle development stage (S3)
PRJNA723697	SRX10692257	31.039549	Shengqin NO.2	seed	S3-3	S3-3	middle development stage (S3)
PRJNA723697	SRX10692258	33.22691	Shengqin NO.2	seed	S5-1	S5-1	maturation stage (S5)
PRJNA723697	SRX10692259	31.799437	Shengqin NO.2	seed	S5-2	S5-2	maturation stage (S5)
PRJNA723697	SRX10692260	33.447697	Shengqin NO.2	seed	S5-3	S5-3	maturation stage (S5)
PRJNA884666	SRX17729272	33.111404	celery	anther		W99A-r1	male sterile lineÂ
PRJNA884666	SRX17729273	32.087181	celery	anther		W99A-r2	male sterile lineÂ
PRJNA884666	SRX17729274	32.478268	celery	anther		W99A-r3	male sterile lineÂ
PRJNA884666	SRX17729275	29.120255	celery	anther		W99B-r1	maintainer line
PRJNA884666	SRX17729276	25.210762	celery	anther		W99B-r2	maintainer line
PRJNA884666	SRX17729277	20.186115	celery	anther		W99B-r3	maintainer line
PRJNA884180	SRX17743889	8.295906	var. secalinum Yablochny	collenchyma		Col_S1_rep1-1
PRJNA884180	SRX17748056	7.610599	var. secalinum Yablochny	collenchyma		Col_S1_rep3	biological replicate 3
PRJNA884180	SRX17748057	10.115575	var. secalinum Yablochny	collenchyma		Col_S1_rep4	biological replicate 4
PRJNA884180	SRX17748678	12.592854	var. secalinum Yablochny	parenchyma		Par_S1_rep1	Biological replicate 1
PRJNA884180	SRX17748679	10.18152	var. secalinum Yablochny	parenchyma		Par_S1_rep2	Biological replicate 2
PRJNA884180	SRX17748680	11.606287	var. secalinum Yablochny	parenchyma		Par_S1_rep3	Biological replicate 3
PRJNA884180	SRX17748681	15.606498	var. secalinum Yablochny	parenchyma		Par_S1_rep4	Biological replicate 4
PRJNA884180	SRX17748898	13.437793	var. secalinum Yablochny	vascular bundle		Vas_S1_rep1	Biological replicate 1
PRJNA884180	SRX17748899	14.12293	var. secalinum Yablochny	vascular bundle		Vas_S1_rep2	Biological replicate 2
PRJNA884180	SRX17748900	14.467371	var. secalinum Yablochny	vascular bundle		Vas_S1_rep3	Biological replicate 3
PRJNA884180	SRX17748901	11.711591	var. secalinum Yablochny	vascular bundle		Vas_S1_rep4	Biological replicate 4
PRJNA884180	SRX17749129	15.997417	var. secalinum Yablochny	part of the celery petiole without collenchyma strands		Collenchyma-free_S1_rep1	Biological replicate 1
PRJNA884180	SRX17749130	12.148675	var. secalinum Yablochny	part of the celery petiole without collenchyma strands		Collenchyma-free_S1_rep2	Biological replicate 2
PRJNA884180	SRX17749131	12.948697	var. secalinum Yablochny	part of the celery petiole without collenchyma strands		Collenchyma-free_S1_rep3	Biological replicate 3
PRJNA884180	SRX17749132	13.899006	var. secalinum Yablochny	part of the celery petiole without collenchyma strands		Collenchyma-free_S1_rep4	Biological replicate 4
PRJNA1124269	SRX24936411	3.804057		leaf		CK1	replicate=biological replicate1
PRJNA1124269	SRX24936412	5.19451		leaf		CK2	replicate=biological replicate2
PRJNA1124269	SRX24936413	4.653484		leaf		CK3	replicate=biological replicate3
PRJNA1124269	SRX24936414	16.571815		leaf		D1	replicate=biological replicate1
PRJNA1124269	SRX24936415	12.633608		leaf		D2	replicate=biological replicate2
PRJNA1124269	SRX24936416	12.845317		leaf		D3	replicate=biological replicate3
PRJNA1124269	SRX24936417	10.049001		leaf		MD1	replicate=biological replicate1
PRJNA1124269	SRX24936418	5.832672		leaf		MD2	replicate=biological replicate2
PRJNA1124269	SRX24936419	6.154395		leaf		MD3	replicate=biological replicate3
PRJNA387092	SRX2833309	16.17621	shanghaihuangxin	leaf	leaves between 0.5 and 1 cm in breadth, folded;	stage 2
PRJNA387092	SRX2833321	10.832647	shanghaihuangxin	leaf	leaves between 2and 2.5 cm in breadth, nearly unfolded, with clear stem exten-sion	stage 5
PRJNA387092	SRX2833323	6.63272	shanghaihuangxin	leaf	leaves >3 cm, unfolded, with clearstem extension	stage 7
PRJNA543957	SRX5879598	23.791569	Zhangzhou lvqing	stem		Se3	100 ppm Na2SeO4
PRJNA543957	SRX5879599	26.464029	Zhangzhou lvqing	stem		Se2	100 ppm Na2SeO4
PRJNA543957	SRX5879600	31.654739	Zhangzhou lvqing	stem		Mock2	mock
PRJNA543957	SRX5879601	23.348555	Zhangzhou lvqing	stem		Mock1	mock
PRJNA543957	SRX5879602	21.683762	Zhangzhou lvqing	stem		Se1	100 ppm Na2SeO4
PRJNA543957	SRX5879603	25.283091	Zhangzhou lvqing	stem		Mock3	mock
PRJNA609149	SRX7815917	14.281468	Jinnan Shiqin	flower bud	early flower bud	early flower bud
PRJNA609149	SRX7815918	14.734672	Jinnan Shiqin	flower bud	middle flower bud	middle flower bud
PRJNA609149	SRX7815919	12.133826	Jinnan Shiqin	flower bud	early flowering period	early flowering period

Network

🔍 Co-expression Network

🔍 Protein-Protein Interaction Network

Orthology

Family	Species	Count	Orthologous Genes
Acanthaceae	Avicennia marina	1	jg21820
Aizoaceae	Mesembryanthemum crystallinum	1	gene_21972
Amaranthaceae	Atriplex hortensis	1	Ah017350
Amaranthaceae	Beta vulgaris	1	BVRB_8g185030
Amaranthaceae	Salicornia bigelovii	2	Sbi_jg25857, Sbi_jg9706
Amaranthaceae	Salicornia europaea	1	Seu_jg18960
Amaranthaceae	Suaeda aralocaspica	1	GOSA_00011583
Amaranthaceae	Suaeda glauca	3	Sgl41711, Sgl41713, Sgl46509
Amaranthaceae	Chenopodium album	3	gene:ENSEOMG00000010566, gene:ENSEOMG00000035215 ... gene:ENSEOMG00000045369
Amaranthaceae	Chenopodium quinoa	2	CQ.Regalona.r1.8AG0000800, CQ.Regalona.r1.8BG0000660
Anacardiaceae	Pistacia vera	3	pistato.v30067160, pistato.v30067550, pistato.v30068530
Apiaceae	Apium graveolens	9	Ag11G04978, Ag1G00251, Ag1G00311, Ag1G01185, Ag1G01186 ... Ag1G01202, Ag8G00480, Ag8G01532, Ag8G02083
Arecaceae	Cocos nucifera	4	COCNU_01G007030, COCNU_01G012260, COCNU_01G012270 ... contig69527005G000010
Arecaceae	Phoenix dactylifera	2	gene-LOC103713564, gene-LOC103719049
Asparagaceae	Asparagus officinalis	2	AsparagusV1_05.1263.V1.1, AsparagusV1_05.1264.V1.1
Asteraceae	Flaveria trinervia	1	Ftri5G25875
Brassicaceae	Arabidopsis thaliana	1	AT4G12570.1
Brassicaceae	Eutrema salsugineum	2	Thhalv10027607m.g.v1.0, Thhalv10028412m.g.v1.0
Brassicaceae	Schrenkiella parvula	1	Sp6g04940.v2.2
Brassicaceae	Brassica nigra	4	BniB02g072810.2N, BniB05g056220.2N, BniB08g037520.2N ... BniB08g048630.2N
Casuarinaceae	Casuarina equisetifolia	1	Ceq01G2095
Casuarinaceae	Casuarina glauca	1	Cgl01G2294
Dunaliellaceae	Dunaliella salina	1	Dusal.0456s00005.v1.0
Hydrocharitaceae	Thalassia testudinum	1	gene.Thate04g08720
Malvaceae	Hibiscus hamabo Siebold & Zucc.	2	nbisL1-mrna-3569, nbisL1-mrna-7735
Nitrariaceae	Nitraria sibirica	1	evm.TU.LG12.1219
Plantaginaceae	Plantago ovata	8	Pov_00006039, Pov_00007522, Pov_00016326, Pov_00027453 ... Pov_00029140, Pov_00029142, Pov_00029145, Pov_00039053
Plumbaginaceae	Limonium bicolor	1	Lb1G00531
Poaceae	Echinochloa crus-galli	6	AH03.2377, AH08.1998, BH03.2503, BH08.2096, CH03.2701 ... CH08.2273
Poaceae	Eleusine coracana subsp. coracana	4	gene-QOZ80_6AG0539460, gene-QOZ80_6BG0492820 ... gene-QOZ80_8AG0636370, gene-QOZ80_8BG0665020
Poaceae	Hordeum vulgare	1	HORVU.MOREX.r3.5HG0490450.1
Poaceae	Lolium multiflorum	3	gene-QYE76_006082, gene-QYE76_006083, gene-QYE76_029940
Poaceae	Oryza coarctata	2	Oco17G007750, Oco18G007990
Poaceae	Oryza sativa	1	LOC_Os09g31090.2
Poaceae	Paspalum vaginatum	2	gene-BS78_02G222000, gene-BS78_07G141200
Poaceae	Puccinellia tenuiflora	2	Pt_Chr0501129, Pt_Chr0701610
Poaceae	Sporobolus alterniflorus	6	Chr10G007420, Chr11G011930, Chr16G016810, Chr17G016170 ... Chr20G000640, Chr29G002710
Poaceae	Thinopyrum elongatum	3	Tel5E01G421700, Tel7E01G1007900, Tel7E01G430600
Poaceae	Triticum dicoccoides	6	gene_TRIDC5AG019310, gene_TRIDC5AG040600 ... gene_TRIDC5BG043300, gene_TRIDC5BG044220, gene_TRIDC7AG031210, gene_TRIDC7BG023380
Poaceae	Triticum aestivum	5	TraesCS5A02G262600.3, TraesCS5B02G261000.1 ... TraesCS5D02G270200.2, TraesCS7A02G244000.1, TraesCS7B02G496200.1
Poaceae	Zea mays	2	Zm00001eb101780_P001, Zm00001eb316530_P001
Poaceae	Zoysia japonica	2	nbis-gene-17377, nbis-gene-19510
Poaceae	Zoysia macrostachya	2	Zma_g24326, Zma_g32775
Portulacaceae	Portulaca oleracea	5	evm.TU.LG01.1964, evm.TU.LG11.383, evm.TU.LG14.1142 ... evm.TU.LG18.1348, evm.TU.LG20.534
Posidoniaceae	Posidonia oceanica	1	gene.Posoc03g10080
Rhizophoraceae	Bruguiera sexangula	2	evm.TU.Scaffold_7_RagTag.1490, evm.TU.Scaffold_8_RagTag.308
Rhizophoraceae	Carallia pectinifolia	3	nbisL1-mrna-19992, nbisL1-mrna-20303, nbisL1-mrna-9973
Rhizophoraceae	Ceriops tagal	2	nbisL1-mrna-17689, nbisL1-mrna-177
Rhizophoraceae	Ceriops zippeliana	2	nbisL1-mrna-13430, nbisL1-mrna-17923
Rhizophoraceae	Kandelia candel	1	evm.TU.utg000002l.189
Rhizophoraceae	Kandelia obovata	2	Maker00003440, Maker00011730
Rhizophoraceae	Rhizophora apiculata	1	nbisL1-mrna-14922
Rhizophoraceae	Rhizophora mangle	1	nbisL1-mrna-12175
Salicaceae	Populus euphratica	3	populus_peu10575, populus_peu10653, populus_peu26479
Solanaceae	Lycium barbarum	2	gene-LOC132604181, gene-LOC132640239
Solanaceae	Solanum chilense	8	SOLCI002230800, SOLCI003330700, SOLCI003548800 ... SOLCI003950300, SOLCI003950400, SOLCI004316600, SOLCI005599900, SOLCI006077400
Solanaceae	Solanum pennellii	7	gene-LOC107002406, gene-LOC107003590, gene-LOC107006572 ... gene-LOC107006573, gene-LOC107020838, gene-LOC107029876, gene-LOC107029878
Tamaricaceae	Reaumuria soongarica	2	MSTRG.10800_chr06_+, gene_452
Tamaricaceae	Tamarix chinensis	1	TC08G0186