halophFGD

Basic Information

Locus ID: Ag11G04943

Species & Taxonomic ID: Apium graveolens & 4045

Genome Assembly: GCA_009905375.1

Description: ABC transporter C family member

Maps and Mapping Data

Chromosome	Start	End	Strand	ID
chr11	204375274	204412171	+	Ag11G04943

Protein Data

Protein Properties:

Theoretical pI	Molecular Weight	Instability Index	Aliphatic Index	GRAVY
8.19	136,761.80 Da	36.41	111.49	0.20

Protein Domain:

Category	ID	Description	Start	End	Evalue/Score	InterPro ID
CDD	cd03250	ABCC_MRP_domain1	615	816	2.82269E-104	-
CDD	cd18579	ABC_6TM_ABCC_D1	305	587	2.55385E-92	IPR044746
Pfam	PF00005	ABC transporter	633	768	1.2E-17	IPR003439
Pfam	PF00664	ABC transporter transmembrane region	917	1169	7.8E-30	IPR011527
Pfam	PF00664	ABC transporter transmembrane region	307	571	9.4E-34	IPR011527
SUPERFAMILY	SSF52540	P-loop containing nucleoside triphosphate hydrolases	613	838	1.11E-52	IPR027417
SUPERFAMILY	SSF90123	ABC transporter transmembrane region	289	595	2.62E-41	IPR036640
SUPERFAMILY	SSF90123	ABC transporter transmembrane region	913	1213	3.01E-42	IPR036640
Gene3D	G3DSA:1.20.1560.10	ABC transporter type 1, transmembrane domain	879	1215	1.4E-51	IPR036640
Gene3D	G3DSA:3.40.50.300	-	610	863	1.4E-73	IPR027417
Gene3D	G3DSA:1.20.1560.10	ABC transporter type 1, transmembrane domain	275	601	2.5E-62	IPR036640
SMART	SM00382	AAA_5	642	816	1.0E-7	IPR003593
ProSiteProfiles	PS50929	ABC transporter integral membrane type-1 fused domain profile.	304	583	38.018494	IPR011527
ProSiteProfiles	PS50929	ABC transporter integral membrane type-1 fused domain profile.	918	1201	31.441551	IPR011527
ProSiteProfiles	PS50893	ATP-binding cassette, ABC transporter-type domain profile.	615	839	23.029318	IPR003439
ProSitePatterns	PS00211	ABC transporters family signature.	741	755	-	IPR017871

Gene Ontology

Biological Process:

GO:0055085 (transmembrane transport)

Molecular Function:

GO:0005524 (ATP binding) GO:0140359 (ABC-type transporter activity)

Cellular Component:

GO:0016020 (membrane)

KEGG Pathway

KO Term:

K05665 (ATP-binding cassette, subfamily C (CFTR/MRP), member 1 [EC:7.6.2.3])

Pathway:

ko01523 (Antifolate resistance) map01523 (Antifolate resistance) ko02010 (ABC transporters) map02010 (ABC transporters) ko04071 (Sphingolipid signaling pathway) map04071 (Sphingolipid signaling pathway)

Best hit

Source	Best Hit ID	Description
TAIR	AT2G34660.1	multidrug resistance-associated protein 2. encodes a multidrug resistance-associated protein that is MgATP-energized glutathione S-conjugate pump. The expression of this gene is upregulated by herbicide safeners such as benoxacor and fenclorim.
RefSeq	XP_017234948.1	PREDICTED: LOW QUALITY PROTEIN: ABC transporter C family member 2-like [Daucus carota subsp. sativus]
Swiss-Prot	Q42093	ABC transporter C family member 2 OS=Arabidopsis thaliana OX=3702 GN=ABCC2 PE=1 SV=2
TrEMBL	A0A166CKC3	ABC transporter C family member 2-like OS=Daucus carota subsp. sativus OX=79200 GN=DCAR_004808 PE=4 SV=1

Expression

BioProject	Accession	TPM	Cultivar	Tissue	Development Stage	Sample Name	Description
PRJNA723697	SRX10692252	7.231991	Shengqin NO.2	seed	S1-1	S1-1	initial formation stage (S1)
PRJNA723697	SRX10692254	6.95312	Shengqin NO.2	seed	S1-3	S1-3	initial formation stage (S1)
PRJNA723697	SRX10692255	5.737976	Shengqin NO.2	seed	S3-1	S3-1	middle development stage (S3)
PRJNA723697	SRX10692256	8.284389	Shengqin NO.2	seed	S3-2	S3-2	middle development stage (S3)
PRJNA723697	SRX10692257	8.364817	Shengqin NO.2	seed	S3-3	S3-3	middle development stage (S3)
PRJNA723697	SRX10692258	7.189099	Shengqin NO.2	seed	S5-1	S5-1	maturation stage (S5)
PRJNA723697	SRX10692259	6.298079	Shengqin NO.2	seed	S5-2	S5-2	maturation stage (S5)
PRJNA723697	SRX10692260	3.142619	Shengqin NO.2	seed	S5-3	S5-3	maturation stage (S5)
PRJNA884666	SRX17729272	9.890693	celery	anther		W99A-r1	male sterile lineÂ
PRJNA884666	SRX17729273	9.347057	celery	anther		W99A-r2	male sterile lineÂ
PRJNA884666	SRX17729274	10.642297	celery	anther		W99A-r3	male sterile lineÂ
PRJNA884666	SRX17729275	8.650164	celery	anther		W99B-r1	maintainer line
PRJNA884666	SRX17729276	9.881341	celery	anther		W99B-r2	maintainer line
PRJNA884666	SRX17729277	6.883279	celery	anther		W99B-r3	maintainer line
PRJNA884180	SRX17743889	1.224771	var. secalinum Yablochny	collenchyma		Col_S1_rep1-1
PRJNA884180	SRX17748056	1.64168	var. secalinum Yablochny	collenchyma		Col_S1_rep3	biological replicate 3
PRJNA884180	SRX17748057	0.733309	var. secalinum Yablochny	collenchyma		Col_S1_rep4	biological replicate 4
PRJNA884180	SRX17748678	10.832832	var. secalinum Yablochny	parenchyma		Par_S1_rep1	Biological replicate 1
PRJNA884180	SRX17748679	2.79258	var. secalinum Yablochny	parenchyma		Par_S1_rep2	Biological replicate 2
PRJNA884180	SRX17748680	16.071474	var. secalinum Yablochny	parenchyma		Par_S1_rep3	Biological replicate 3
PRJNA884180	SRX17748681	17.405201	var. secalinum Yablochny	parenchyma		Par_S1_rep4	Biological replicate 4
PRJNA884180	SRX17748898	2.765959	var. secalinum Yablochny	vascular bundle		Vas_S1_rep1	Biological replicate 1
PRJNA884180	SRX17748899	2.695637	var. secalinum Yablochny	vascular bundle		Vas_S1_rep2	Biological replicate 2
PRJNA884180	SRX17748900	2.415739	var. secalinum Yablochny	vascular bundle		Vas_S1_rep3	Biological replicate 3
PRJNA884180	SRX17748901	2.435934	var. secalinum Yablochny	vascular bundle		Vas_S1_rep4	Biological replicate 4
PRJNA884180	SRX17749129	9.847627	var. secalinum Yablochny	part of the celery petiole without collenchyma strands		Collenchyma-free_S1_rep1	Biological replicate 1
PRJNA884180	SRX17749130	4.955996	var. secalinum Yablochny	part of the celery petiole without collenchyma strands		Collenchyma-free_S1_rep2	Biological replicate 2
PRJNA884180	SRX17749131	7.622796	var. secalinum Yablochny	part of the celery petiole without collenchyma strands		Collenchyma-free_S1_rep3	Biological replicate 3
PRJNA884180	SRX17749132	6.347694	var. secalinum Yablochny	part of the celery petiole without collenchyma strands		Collenchyma-free_S1_rep4	Biological replicate 4
PRJNA1124269	SRX24936411	0.45855		leaf		CK1	replicate=biological replicate1
PRJNA1124269	SRX24936412	0.081394		leaf		CK2	replicate=biological replicate2
PRJNA1124269	SRX24936413	0.343787		leaf		CK3	replicate=biological replicate3
PRJNA1124269	SRX24936414	2.053865		leaf		D1	replicate=biological replicate1
PRJNA1124269	SRX24936415	0.935106		leaf		D2	replicate=biological replicate2
PRJNA1124269	SRX24936416	0.795594		leaf		D3	replicate=biological replicate3
PRJNA1124269	SRX24936417	0.251566		leaf		MD1	replicate=biological replicate1
PRJNA1124269	SRX24936418	0.598862		leaf		MD2	replicate=biological replicate2
PRJNA1124269	SRX24936419	0.566437		leaf		MD3	replicate=biological replicate3
PRJNA387092	SRX2833309	6.366228	shanghaihuangxin	leaf	leaves between 0.5 and 1 cm in breadth, folded;	stage 2
PRJNA387092	SRX2833321	4.336583	shanghaihuangxin	leaf	leaves between 2and 2.5 cm in breadth, nearly unfolded, with clear stem exten-sion	stage 5
PRJNA387092	SRX2833323	2.974955	shanghaihuangxin	leaf	leaves >3 cm, unfolded, with clearstem extension	stage 7
PRJNA543957	SRX5879598	14.561689	Zhangzhou lvqing	stem		Se3	100 ppm Na2SeO4
PRJNA543957	SRX5879599	17.875238	Zhangzhou lvqing	stem		Se2	100 ppm Na2SeO4
PRJNA543957	SRX5879600	25.902933	Zhangzhou lvqing	stem		Mock2	mock
PRJNA543957	SRX5879601	17.213734	Zhangzhou lvqing	stem		Mock1	mock
PRJNA543957	SRX5879602	11.084034	Zhangzhou lvqing	stem		Se1	100 ppm Na2SeO4
PRJNA543957	SRX5879603	30.664532	Zhangzhou lvqing	stem		Mock3	mock
PRJNA609149	SRX7815917	0.956508	Jinnan Shiqin	flower bud	early flower bud	early flower bud
PRJNA609149	SRX7815918	1.787759	Jinnan Shiqin	flower bud	middle flower bud	middle flower bud
PRJNA609149	SRX7815919	1.738062	Jinnan Shiqin	flower bud	early flowering period	early flowering period

Network

🔍 Co-expression Network

🔍 Protein-Protein Interaction Network

Orthology

Family	Species	Count	Orthologous Genes
Acanthaceae	Avicennia marina	4	jg20807, jg20810, jg22314, jg25043
Aizoaceae	Mesembryanthemum crystallinum	2	gene_22572, gene_22584
Amaranthaceae	Atriplex hortensis	1	Ah016406
Amaranthaceae	Beta vulgaris	2	BVRB_6g153720, BVRB_8g187450
Amaranthaceae	Salicornia bigelovii	2	Sbi_jg36010, Sbi_jg555
Amaranthaceae	Salicornia europaea	1	Seu_jg4098
Amaranthaceae	Suaeda aralocaspica	1	GOSA_00028238
Amaranthaceae	Suaeda glauca	2	Sgl22438, Sgl27574
Amaranthaceae	Chenopodium album	4	gene:ENSEOMG00000009287, gene:ENSEOMG00000011228 ... gene:ENSEOMG00000024951, gene:ENSEOMG00000046926
Amaranthaceae	Chenopodium quinoa	2	CQ.Regalona.r1.5AG0013280, CQ.Regalona.r1.8BG0012520
Anacardiaceae	Pistacia vera	4	pistato.v30073940, pistato.v30076000, pistato.v30076020 ... pistato.v30076090
Apiaceae	Apium graveolens	5	Ag11G04943, Ag11G04944, Ag11G04945, Ag11G05079, Ag6G01147
Arecaceae	Cocos nucifera	1	COCNU_04G008000
Arecaceae	Phoenix dactylifera	4	gene-LOC103695628, gene-LOC103723484, gene-LOC120108582 ... gene-LOC120108707
Asparagaceae	Asparagus officinalis	1	AsparagusV1_06.10.V1.1
Asteraceae	Flaveria trinervia	4	Ftri15G20156, Ftri16G15844, Ftri16G18074, Ftri18G30723
Brassicaceae	Arabidopsis thaliana	4	AT1G30400.1, AT1G30410.1, AT1G30420.1, AT2G34660.1
Brassicaceae	Eutrema salsugineum	4	Thhalv10006546m.g.v1.0, Thhalv10006558m.g.v1.0 ... Thhalv10006559m.g.v1.0, Thhalv10016133m.g.v1.0
Brassicaceae	Schrenkiella parvula	3	Sp1g26230.v2.2, Sp1g26240.v2.2, Sp4g16940.v2.2
Brassicaceae	Brassica nigra	6	BniB03g016090.2N, BniB03g034370.2N, BniB03g034390.2N ... BniB04g045900.2N, BniB04g045910.2N, BniB06g009170.2N
Casuarinaceae	Casuarina equisetifolia	5	Ceq04G0526, Ceq04G0529, Ceq04G0531, Ceq04G0535, Ceq04G0536
Casuarinaceae	Casuarina glauca	5	Cgl04G0626, Cgl04G0627, Cgl04G0628, Cgl04G0629, Cgl04G0631
Cymodoceaceae	Cymodocea nodosa	2	gene.Cymno09g02980, gene.Cymno09g03070
Dunaliellaceae	Dunaliella salina	1	Dusal.2478s00001.v1.0
Hydrocharitaceae	Thalassia testudinum	3	gene.Thate05g03550, gene.Thate05g03560, gene.Thate05g03570
Nitrariaceae	Nitraria sibirica	3	evm.TU.LG12.168, evm.TU.LG12.169, evm.TU.LG12.175
Plantaginaceae	Plantago ovata	3	Pov_00013067, Pov_00013071, Pov_00013074
Plumbaginaceae	Limonium bicolor	3	Lb2G14426, Lb2G14428, Lb2G14429
Poaceae	Echinochloa crus-galli	3	AH09.2326, BH09.2523, CH09.2760
Poaceae	Eleusine coracana subsp. coracana	2	gene-QOZ80_4AG0303600, gene-QOZ80_4BG0334490
Poaceae	Hordeum vulgare	1	HORVU.MOREX.r3.2HG0195130.1
Poaceae	Lolium multiflorum	2	gene-QYE76_046338, gene-QYE76_047328
Poaceae	Oryza coarctata	2	Oco07G016200, Oco08G015700
Poaceae	Oryza sativa	1	LOC_Os04g52900.1
Poaceae	Paspalum vaginatum	1	gene-BS78_06G232300
Poaceae	Puccinellia tenuiflora	2	Pt_Chr0301130, Pt_Chr0307470
Poaceae	Sporobolus alterniflorus	4	Chr23G004610, Chr24G007140, Chr25G002910, Chr30G002860
Poaceae	Thinopyrum elongatum	1	Tel2E01G784600
Poaceae	Triticum dicoccoides	4	gene_TRIDC1AG059570, gene_TRIDC1BG068180 ... gene_TRIDC2AG065900, gene_TRIDC2BG070950
Poaceae	Triticum aestivum	5	TraesCS1A02G404300.1, TraesCS1B02G433800.1 ... TraesCS2A02G463900.1, TraesCS2B02G485600.1, TraesCS2D02G464800.1
Poaceae	Zea mays	1	Zm00001eb070400_P001
Poaceae	Zoysia japonica	2	nbis-gene-22897, nbis-gene-5877
Poaceae	Zoysia macrostachya	2	Zma_g20470, Zma_g21983
Portulacaceae	Portulaca oleracea	2	evm.TU.LG04.1143, evm.TU.LG05.1684
Posidoniaceae	Posidonia oceanica	4	gene.Posoc08g07310, gene.Posoc08g07320, gene.Posoc08g07330 ... gene.Posoc08g07340
Rhizophoraceae	Bruguiera sexangula	1	evm.TU.Scaffold_14_RagTag.950
Rhizophoraceae	Carallia pectinifolia	6	nbisL1-mrna-16723, nbisL1-mrna-16726, nbisL1-mrna-16728 ... nbisL1-mrna-16798, nbisL1-mrna-16800, nbisL1-mrna-16803
Rhizophoraceae	Ceriops tagal	3	nbisL1-mrna-19450, nbisL1-mrna-19451, nbisL1-mrna-7599
Rhizophoraceae	Ceriops zippeliana	3	nbisL1-mrna-17254, nbisL1-mrna-17256, nbisL1-mrna-17257
Rhizophoraceae	Kandelia candel	2	evm.TU.utg000025l.119, evm.TU.utg000025l.121
Rhizophoraceae	Kandelia obovata	2	Maker00012189, Maker00012267
Rhizophoraceae	Rhizophora apiculata	2	nbisL1-mrna-8645, nbisL1-mrna-8646
Rhizophoraceae	Rhizophora mangle	2	nbisL1-mrna-9170, nbisL1-mrna-9171
Salicaceae	Populus euphratica	5	populus_peu10152, populus_peu17830, populus_peu17836 ... populus_peu18268, populus_peu18269
Solanaceae	Lycium barbarum	2	gene-LOC132609402, gene-LOC132627114
Solanaceae	Solanum chilense	5	SOLCI001326800, SOLCI001326900, SOLCI001327100 ... SOLCI001327300, SOLCI003296100
Solanaceae	Solanum pennellii	2	gene-LOC107007056, gene-LOC107028302
Tamaricaceae	Reaumuria soongarica	1	gene_9699
Tamaricaceae	Tamarix chinensis	2	TC06G1122, TC06G1128
Zosteraceae	Zostera marina	3	Zosma03g34800.v3.1, Zosma256g00010.v3.1, Zosma837g00010.v3.1