Basic Information
Locus ID:
Ag11G04939
Species & Taxonomic ID:
Apium graveolens & 4045
Genome Assembly:
GCA_009905375.1
Short Name:
PID
Description:
Protein kinase PINOID-like
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr11 | 204326514 | 204328694 | - | Ag11G04939 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 9.16 | 49,083.59 Da | 54.43 | 74.57 | -0.24 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00069 | Protein kinase domain | 294 | 401 | 4.7E-18 | IPR000719 |
| Pfam | PF00069 | Protein kinase domain | 82 | 229 | 2.1E-35 | IPR000719 |
| SUPERFAMILY | SSF56112 | Protein kinase-like (PK-like) | 74 | 417 | 7.42E-77 | IPR011009 |
| Gene3D | G3DSA:3.30.200.20 | Phosphorylase Kinase; domain 1 | 79 | 161 | 1.3E-50 | - |
| Gene3D | G3DSA:3.30.200.20 | Phosphorylase Kinase; domain 1 | 420 | 435 | 3.0E-35 | - |
| Gene3D | G3DSA:1.10.510.10 | Transferase(Phosphotransferase) domain 1 | 293 | 419 | 3.0E-35 | - |
| Gene3D | G3DSA:1.10.510.10 | Transferase(Phosphotransferase) domain 1 | 162 | 229 | 1.3E-50 | - |
| SMART | SM00220 | serkin_6 | 81 | 401 | 2.8E-83 | IPR000719 |
| ProSiteProfiles | PS50011 | Protein kinase domain profile. | 81 | 401 | 42.972321 | IPR000719 |
| ProSitePatterns | PS00108 | Serine/Threonine protein kinases active-site signature. | 203 | 215 | - | IPR008271 |
| Coils | Coil | Coil | 110 | 130 | - | - |
Gene Ontology
Biological Process:
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT2G34650.1 | Protein kinase superfamily protein. Encodes a protein serine/threonine kinase that may act as a positive regulator of cellular auxin efflux, as a a binary switch for PIN polarity, and as a negative regulator of auxin signaling. Recessive mutants exhibit similar phenotypes as pin-formed mutants in flowers and inflorescence but distinct phenotypes in cotyledons and leaves. Expressed in the vascular tissue proximal to root and shoot meristems, shoot apex, and embryos. Expression is induced by auxin. Overexpression of the gene results in phenotypes in the root and shoot similar to those found in auxin-insensitive mutants. The protein physically interacts with TCH3 (TOUCH3) and PID-BINDING PROTEIN 1 (PBP1), a previously uncharacterized protein containing putative EF-hand calcium-binding motifs. Acts together with ENP (ENHANCER OF PINOID) to instruct precursor cells to elaborate cotyledons in the transition stage embryo. Interacts with PDK1. PID autophosphorylation is required for the ability of PID to phosphorylate an exogenous substrate. PID activation loop is required for PDK1-dependent PID phosphorylation and requires the PIF domain. Negative regulator of root hair growth. PID kinase activity is critical for the inhibition of root hair growth and for maintaining the proper subcellular localization of PID. | 0 |
| RefSeq | XP_017220852.1 | PREDICTED: protein kinase PINOID [Daucus carota subsp. sativus] | 0 |
| O64682 | Protein kinase PINOID OS=Arabidopsis thaliana OX=3702 GN=PID PE=1 SV=1 | 0 | |
| TrEMBL | A0A175YM83 | Protein kinase domain-containing protein OS=Daucus carota subsp. sativus OX=79200 GN=DCAR_027873 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| PRJNA723697 | SRX10692252 | 7.181908 | Shengqin NO.2 | seed | S1-1 | S1-1 | initial formation stage (S1) |
| PRJNA723697 | SRX10692254 | 4.698719 | Shengqin NO.2 | seed | S1-3 | S1-3 | initial formation stage (S1) |
| PRJNA723697 | SRX10692255 | 1.031432 | Shengqin NO.2 | seed | S3-1 | S3-1 | middle development stage (S3) |
| PRJNA723697 | SRX10692256 | 1.267428 | Shengqin NO.2 | seed | S3-2 | S3-2 | middle development stage (S3) |
| PRJNA723697 | SRX10692257 | 2.14571 | Shengqin NO.2 | seed | S3-3 | S3-3 | middle development stage (S3) |
| PRJNA723697 | SRX10692258 | 0.196641 | Shengqin NO.2 | seed | S5-1 | S5-1 | maturation stage (S5) |
| PRJNA723697 | SRX10692259 | 1.654378 | Shengqin NO.2 | seed | S5-2 | S5-2 | maturation stage (S5) |
| PRJNA723697 | SRX10692260 | 0.075555 | Shengqin NO.2 | seed | S5-3 | S5-3 | maturation stage (S5) |
| PRJNA884666 | SRX17729272 | 7.820096 | celery | anther | W99A-r1 | male sterile line | |
| PRJNA884666 | SRX17729273 | 8.012044 | celery | anther | W99A-r2 | male sterile line | |
| PRJNA884666 | SRX17729274 | 8.424818 | celery | anther | W99A-r3 | male sterile line | |
| PRJNA884666 | SRX17729275 | 8.594103 | celery | anther | W99B-r1 | maintainer line | |
| PRJNA884666 | SRX17729276 | 7.956886 | celery | anther | W99B-r2 | maintainer line | |
| PRJNA884666 | SRX17729277 | 10.231053 | celery | anther | W99B-r3 | maintainer line | |
| PRJNA884180 | SRX17743889 | 45.326488 | var. secalinum Yablochny | collenchyma | Col_S1_rep1-1 | ||
| PRJNA884180 | SRX17748056 | 31.082516 | var. secalinum Yablochny | collenchyma | Col_S1_rep3 | biological replicate 3 | |
| PRJNA884180 | SRX17748057 | 67.270088 | var. secalinum Yablochny | collenchyma | Col_S1_rep4 | biological replicate 4 | |
| PRJNA884180 | SRX17748678 | 15.430307 | var. secalinum Yablochny | parenchyma | Par_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17748679 | 16.136864 | var. secalinum Yablochny | parenchyma | Par_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17748680 | 6.646889 | var. secalinum Yablochny | parenchyma | Par_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17748681 | 13.807587 | var. secalinum Yablochny | parenchyma | Par_S1_rep4 | Biological replicate 4 | |
| PRJNA884180 | SRX17748898 | 1.629784 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17748899 | 0.625816 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17748900 | 3.537121 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17748901 | 4.465269 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep4 | Biological replicate 4 | |
| PRJNA884180 | SRX17749129 | 33.132023 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17749130 | 23.212528 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17749131 | 31.367115 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17749132 | 29.50139 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep4 | Biological replicate 4 | |
| PRJNA1124269 | SRX24936411 | 4.463178 | leaf | CK1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936412 | 8.24716 | leaf | CK2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936413 | 8.830928 | leaf | CK3 | replicate=biological replicate3 | ||
| PRJNA1124269 | SRX24936414 | 2.137591 | leaf | D1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936415 | 3.25264 | leaf | D2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936416 | 1.617853 | leaf | D3 | replicate=biological replicate3 | ||
| PRJNA1124269 | SRX24936417 | 1.399988 | leaf | MD1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936418 | 2.449438 | leaf | MD2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936419 | 1.118392 | leaf | MD3 | replicate=biological replicate3 | ||
| PRJNA387092 | SRX2833309 | 0.598821 | shanghaihuangxin | leaf | leaves between 0.5 and 1 cm in breadth, folded; | stage 2 | |
| PRJNA387092 | SRX2833321 | 0.285869 | shanghaihuangxin | leaf | leaves between 2and 2.5 cm in breadth, nearly unfolded, with clear stem exten-sion | stage 5 | |
| PRJNA387092 | SRX2833323 | 1.656681 | shanghaihuangxin | leaf | leaves >3 cm, unfolded, with clearstem extension | stage 7 | |
| PRJNA543957 | SRX5879598 | 0 | Zhangzhou lvqing | stem | Se3 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879599 | 5.495792 | Zhangzhou lvqing | stem | Se2 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879600 | 2.035022 | Zhangzhou lvqing | stem | Mock2 | mock | |
| PRJNA543957 | SRX5879601 | 3.755255 | Zhangzhou lvqing | stem | Mock1 | mock | |
| PRJNA543957 | SRX5879602 | 0 | Zhangzhou lvqing | stem | Se1 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879603 | 24.874256 | Zhangzhou lvqing | stem | Mock3 | mock | |
| PRJNA609149 | SRX7815917 | 6.478488 | Jinnan Shiqin | flower bud | early flower bud | early flower bud | |
| PRJNA609149 | SRX7815918 | 4.157854 | Jinnan Shiqin | flower bud | middle flower bud | middle flower bud | |
| PRJNA609149 | SRX7815919 | 5.783031 | Jinnan Shiqin | flower bud | early flowering period | early flowering period |
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Acanthaceae | Avicennia marina | 4 | jg20802, jg22310, jg25039, jg38769 |
| Aizoaceae | Mesembryanthemum crystallinum | 1 | gene_643 |
| Amaranthaceae | Beta vulgaris | 1 | BVRB_8g187390 |
| Amaranthaceae | Salicornia bigelovii | 2 | Sbi_jg40556, Sbi_jg50590 |
| Amaranthaceae | Salicornia europaea | 1 | Seu_jg2146 |
| Amaranthaceae | Suaeda aralocaspica | 1 | GOSA_00018100 |
| Amaranthaceae | Suaeda glauca | 2 | Sgl45247, Sgl50029 |
| Amaranthaceae | Chenopodium album | 3 | gene:ENSEOMG00000011583, gene:ENSEOMG00000034964 ... |
| Amaranthaceae | Chenopodium quinoa | 2 | CQ.Regalona.r1.8AG0010210, CQ.Regalona.r1.8BG0012360 |
| Anacardiaceae | Pistacia vera | 1 | pistato.v30075940 |
| Apiaceae | Apium graveolens | 2 | Ag11G04939, Ag8G00743 |
| Arecaceae | Cocos nucifera | 2 | COCNU_06G020060, scaffold009984G000010 |
| Arecaceae | Phoenix dactylifera | 4 | gene-LOC103703678, gene-LOC103710515, gene-LOC103716034 ... |
| Asteraceae | Flaveria trinervia | 1 | Ftri15G30139 |
| Brassicaceae | Arabidopsis thaliana | 1 | AT2G34650.1 |
| Brassicaceae | Eutrema salsugineum | 1 | Thhalv10016667m.g.v1.0 |
| Brassicaceae | Schrenkiella parvula | 1 | Sp4g16920.v2.2 |
| Brassicaceae | Brassica nigra | 2 | BniB01g009590.2N, BniB06g009180.2N |
| Casuarinaceae | Casuarina equisetifolia | 1 | Ceq04G0100 |
| Casuarinaceae | Casuarina glauca | 1 | Cgl04G0157 |
| Cymodoceaceae | Cymodocea nodosa | 3 | gene.Cymno09g03030, gene.Cymno09g03080, gene.Cymno13g02490 |
| Hydrocharitaceae | Thalassia testudinum | 3 | gene.Thate05g03660, gene.Thate05g18880, gene.Thate07g01810 |
| Nitrariaceae | Nitraria sibirica | 1 | evm.TU.LG12.161 |
| Plantaginaceae | Plantago ovata | 1 | Pov_00013079 |
| Poaceae | Echinochloa crus-galli | 5 | AH05.4061, BH01.1456, BH05.4158, CH05.4380, CH06.2668 |
| Poaceae | Eleusine coracana subsp. coracana | 3 | gene-QOZ80_3AG0224280, gene-QOZ80_3BG0269300 ... |
| Poaceae | Hordeum vulgare | 2 | HORVU.MOREX.r3.5HG0427840.1.CDS1 ... |
| Poaceae | Lolium multiflorum | 3 | gene-QYE76_000983, gene-QYE76_063423, gene-QYE76_063535 |
| Poaceae | Oryza coarctata | 4 | Oco05G018870, Oco06G019660, Oco23G010430, Oco24G010310 |
| Poaceae | Oryza sativa | 2 | LOC_Os03g44020.1, LOC_Os12g42020.1 |
| Poaceae | Paspalum vaginatum | 2 | gene-BS78_01G144500, gene-BS78_08G147800 |
| Poaceae | Puccinellia tenuiflora | 2 | Pt_Chr0104493, Pt_Chr0704467 |
| Poaceae | Sporobolus alterniflorus | 4 | Chr04G019100, Chr04G024850, Chr06G019940, Chr07G023660 |
| Poaceae | Thinopyrum elongatum | 2 | Tel5E01G090200, Tel5E01G596900 |
| Poaceae | Triticum dicoccoides | 4 | gene_TRIDC5AG005700, gene_TRIDC5AG054850 ... |
| Poaceae | Triticum aestivum | 5 | TraesCS5A02G037100.1.cds1, TraesCS5A02G375200.1.cds1 ... |
| Poaceae | Zea mays | 1 | Zm00001eb031760_P001 |
| Poaceae | Zoysia japonica | 5 | nbis-gene-20476, nbis-gene-39591, nbis-gene-44518 ... |
| Poaceae | Zoysia macrostachya | 4 | Zma_g25338, Zma_g26131, Zma_g3191, Zma_g869 |
| Portulacaceae | Portulaca oleracea | 2 | evm.TU.LG04.1141, evm.TU.LG05.1682 |
| Posidoniaceae | Posidonia oceanica | 2 | gene.Posoc08g07450, gene.Posoc10g05110 |
| Rhizophoraceae | Bruguiera sexangula | 2 | evm.TU.Scaffold_14_RagTag.945, evm.TU.Scaffold_16_RagTag.860 |
| Rhizophoraceae | Carallia pectinifolia | 3 | nbisL1-mrna-16718, nbisL1-mrna-16794, nbisL1-mrna-25029 |
| Rhizophoraceae | Ceriops tagal | 2 | nbisL1-mrna-20392, nbisL1-mrna-5733 |
| Rhizophoraceae | Ceriops zippeliana | 3 | nbisL1-mrna-17251, nbisL1-mrna-19224, nbisL1-mrna-19225 |
| Rhizophoraceae | Kandelia candel | 2 | evm.TU.utg000022l.61, evm.TU.utg000025l.116 |
| Rhizophoraceae | Kandelia obovata | 2 | Maker00012286, Maker00012323 |
| Rhizophoraceae | Rhizophora apiculata | 2 | nbisL1-mrna-57, nbisL1-mrna-8649 |
| Rhizophoraceae | Rhizophora mangle | 2 | nbisL1-mrna-10288, nbisL1-mrna-9167 |
| Tamaricaceae | Reaumuria soongarica | 1 | gene_10538 |
| Zosteraceae | Zostera marina | 1 | Zosma03g23660.v3.1 |