halophFGD

Basic Information

Locus ID: Ag11G04873

Species & Taxonomic ID: Apium graveolens & 4045

Genome Assembly: GCA_009905375.1

Description: STICHEL-like 3

Maps and Mapping Data

Chromosome	Start	End	Strand	ID
chr11	201077331	201086565	+	Ag11G04873

Protein Data

Protein Properties:

Theoretical pI	Molecular Weight	Instability Index	Aliphatic Index	GRAVY
9.45	136,180.28 Da	54.95	78.71	-0.63

Protein Domain:

Category	ID	Description	Start	End	Evalue/Score	InterPro ID
CDD	cd00009	AAA	458	617	0.00265402	-
CDD	cd18137	HLD_clamp_pol_III_gamma_tau	617	680	9.43118E-18	IPR045085
Pfam	PF12169	DNA polymerase III subunits gamma and tau domain III	675	731	1.2E-5	IPR022754
Pfam	PF13177	DNA polymerase III, delta subunit	460	617	3.4E-20	-
SUPERFAMILY	SSF52540	P-loop containing nucleoside triphosphate hydrolases	442	667	3.4E-38	IPR027417
SUPERFAMILY	SSF48019	post-AAA+ oligomerization domain-like	688	790	2.21E-7	IPR008921
Gene3D	G3DSA:1.10.8.60	-	618	680	9.1E-15	-
Gene3D	G3DSA:3.40.50.300	-	435	614	7.4E-40	IPR027417
TIGRFAM	TIGR02397	dnaX_nterm: DNA polymerase III, subunit gamma and tau	443	791	8.3E-100	IPR012763
MobiDBLite	mobidb-lite	consensus disorder prediction	135	154	-	-
MobiDBLite	mobidb-lite	consensus disorder prediction	1044	1059	-	-
MobiDBLite	mobidb-lite	consensus disorder prediction	194	249	-	-
MobiDBLite	mobidb-lite	consensus disorder prediction	250	266	-	-
MobiDBLite	mobidb-lite	consensus disorder prediction	191	267	-	-
MobiDBLite	mobidb-lite	consensus disorder prediction	131	156	-	-
MobiDBLite	mobidb-lite	consensus disorder prediction	1044	1075	-	-
Coils	Coil	Coil	753	780	-	-
Coils	Coil	Coil	1213	1213	-	-

Gene Ontology

Biological Process:

GO:0006260 (DNA replication)

Molecular Function:

GO:0003677 (DNA binding) GO:0003887 (DNA-directed DNA polymerase activity) GO:0005524 (ATP binding)

Cellular Component:

GO:0009360 (DNA polymerase III complex)

Best hit

Source	Best Hit ID	Description
TAIR	AT4G18820.1	AAA-type ATPase family protein.
RefSeq	XP_017235697.1	PREDICTED: protein STICHEL-like 3 [Daucus carota subsp. sativus]
Swiss-Prot	F4JRP0	Protein STICHEL-like 3 OS=Arabidopsis thaliana OX=3702 GN=At4g18820 PE=3 SV=1
TrEMBL	A0A161WZZ7	DNA_pol3_gamma3 domain-containing protein OS=Daucus carota subsp. sativus OX=79200 GN=DCAR_005162 PE=3 SV=1

Expression

BioProject	Accession	TPM	Cultivar	Tissue	Development Stage	Sample Name	Description
PRJNA723697	SRX10692252	1.702867	Shengqin NO.2	seed	S1-1	S1-1	initial formation stage (S1)
PRJNA723697	SRX10692254	1.227698	Shengqin NO.2	seed	S1-3	S1-3	initial formation stage (S1)
PRJNA723697	SRX10692255	1.603664	Shengqin NO.2	seed	S3-1	S3-1	middle development stage (S3)
PRJNA723697	SRX10692256	1.47287	Shengqin NO.2	seed	S3-2	S3-2	middle development stage (S3)
PRJNA723697	SRX10692257	2.358135	Shengqin NO.2	seed	S3-3	S3-3	middle development stage (S3)
PRJNA723697	SRX10692258	3.459228	Shengqin NO.2	seed	S5-1	S5-1	maturation stage (S5)
PRJNA723697	SRX10692259	0.902353	Shengqin NO.2	seed	S5-2	S5-2	maturation stage (S5)
PRJNA723697	SRX10692260	0.598657	Shengqin NO.2	seed	S5-3	S5-3	maturation stage (S5)
PRJNA884666	SRX17729272	19.212509	celery	anther		W99A-r1	male sterile lineÂ
PRJNA884666	SRX17729273	16.206785	celery	anther		W99A-r2	male sterile lineÂ
PRJNA884666	SRX17729274	19.843868	celery	anther		W99A-r3	male sterile lineÂ
PRJNA884666	SRX17729275	14.59508	celery	anther		W99B-r1	maintainer line
PRJNA884666	SRX17729276	14.408931	celery	anther		W99B-r2	maintainer line
PRJNA884666	SRX17729277	11.242056	celery	anther		W99B-r3	maintainer line
PRJNA884180	SRX17743889	1.656422	var. secalinum Yablochny	collenchyma		Col_S1_rep1-1
PRJNA884180	SRX17748056	2.721223	var. secalinum Yablochny	collenchyma		Col_S1_rep3	biological replicate 3
PRJNA884180	SRX17748057	2.07964	var. secalinum Yablochny	collenchyma		Col_S1_rep4	biological replicate 4
PRJNA884180	SRX17748678	4.353945	var. secalinum Yablochny	parenchyma		Par_S1_rep1	Biological replicate 1
PRJNA884180	SRX17748679	3.259626	var. secalinum Yablochny	parenchyma		Par_S1_rep2	Biological replicate 2
PRJNA884180	SRX17748680	1.506331	var. secalinum Yablochny	parenchyma		Par_S1_rep3	Biological replicate 3
PRJNA884180	SRX17748681	2.177083	var. secalinum Yablochny	parenchyma		Par_S1_rep4	Biological replicate 4
PRJNA884180	SRX17748898	4.272531	var. secalinum Yablochny	vascular bundle		Vas_S1_rep1	Biological replicate 1
PRJNA884180	SRX17748899	3.903967	var. secalinum Yablochny	vascular bundle		Vas_S1_rep2	Biological replicate 2
PRJNA884180	SRX17748900	4.402245	var. secalinum Yablochny	vascular bundle		Vas_S1_rep3	Biological replicate 3
PRJNA884180	SRX17748901	3.801854	var. secalinum Yablochny	vascular bundle		Vas_S1_rep4	Biological replicate 4
PRJNA884180	SRX17749129	5.45879	var. secalinum Yablochny	part of the celery petiole without collenchyma strands		Collenchyma-free_S1_rep1	Biological replicate 1
PRJNA884180	SRX17749130	5.308651	var. secalinum Yablochny	part of the celery petiole without collenchyma strands		Collenchyma-free_S1_rep2	Biological replicate 2
PRJNA884180	SRX17749131	3.1628	var. secalinum Yablochny	part of the celery petiole without collenchyma strands		Collenchyma-free_S1_rep3	Biological replicate 3
PRJNA884180	SRX17749132	6.584425	var. secalinum Yablochny	part of the celery petiole without collenchyma strands		Collenchyma-free_S1_rep4	Biological replicate 4
PRJNA1124269	SRX24936411	0.253126		leaf		CK1	replicate=biological replicate1
PRJNA1124269	SRX24936412	0.508999		leaf		CK2	replicate=biological replicate2
PRJNA1124269	SRX24936413	0.488787		leaf		CK3	replicate=biological replicate3
PRJNA1124269	SRX24936414	0.999381		leaf		D1	replicate=biological replicate1
PRJNA1124269	SRX24936415	2.275565		leaf		D2	replicate=biological replicate2
PRJNA1124269	SRX24936416	1.198832		leaf		D3	replicate=biological replicate3
PRJNA1124269	SRX24936417	0.206693		leaf		MD1	replicate=biological replicate1
PRJNA1124269	SRX24936418	0.164026		leaf		MD2	replicate=biological replicate2
PRJNA1124269	SRX24936419	0.137189		leaf		MD3	replicate=biological replicate3
PRJNA387092	SRX2833309	4.574355	shanghaihuangxin	leaf	leaves between 0.5 and 1 cm in breadth, folded;	stage 2
PRJNA387092	SRX2833321	2.567122	shanghaihuangxin	leaf	leaves between 2and 2.5 cm in breadth, nearly unfolded, with clear stem exten-sion	stage 5
PRJNA387092	SRX2833323	1.054677	shanghaihuangxin	leaf	leaves >3 cm, unfolded, with clearstem extension	stage 7
PRJNA543957	SRX5879598	0.170432	Zhangzhou lvqing	stem		Se3	100 ppm Na2SeO4
PRJNA543957	SRX5879599	0.928452	Zhangzhou lvqing	stem		Se2	100 ppm Na2SeO4
PRJNA543957	SRX5879600	5.06276	Zhangzhou lvqing	stem		Mock2	mock
PRJNA543957	SRX5879601	3.737244	Zhangzhou lvqing	stem		Mock1	mock
PRJNA543957	SRX5879602	0.073546	Zhangzhou lvqing	stem		Se1	100 ppm Na2SeO4
PRJNA543957	SRX5879603	5.3424	Zhangzhou lvqing	stem		Mock3	mock
PRJNA609149	SRX7815917	7.323221	Jinnan Shiqin	flower bud	early flower bud	early flower bud
PRJNA609149	SRX7815918	6.981049	Jinnan Shiqin	flower bud	middle flower bud	middle flower bud
PRJNA609149	SRX7815919	6.319851	Jinnan Shiqin	flower bud	early flowering period	early flowering period

Network

🔍 Co-expression Network

🔍 Protein-Protein Interaction Network

Orthology

Family	Species	Count	Orthologous Genes
Acanthaceae	Avicennia marina	4	jg22181, jg24972, jg38722, jg38723
Aizoaceae	Mesembryanthemum crystallinum	1	gene_484
Amaranthaceae	Atriplex hortensis	1	Ah016914
Amaranthaceae	Salicornia bigelovii	2	Sbi_jg40342, Sbi_jg50336
Amaranthaceae	Salicornia europaea	1	Seu_jg1927
Amaranthaceae	Suaeda aralocaspica	1	GOSA_00011506
Amaranthaceae	Suaeda glauca	2	Sgl45574, Sgl50356
Amaranthaceae	Chenopodium album	3	gene:ENSEOMG00000010680, gene:ENSEOMG00000032545 ... gene:ENSEOMG00000047307
Amaranthaceae	Chenopodium quinoa	2	CQ.Regalona.r1.8AG0007530, CQ.Regalona.r1.8BG0007680
Anacardiaceae	Pistacia vera	1	pistato.v30071850
Apiaceae	Apium graveolens	2	Ag11G04873, Ag8G00833
Arecaceae	Cocos nucifera	2	COCNU_06G003690, COCNU_14G002400
Arecaceae	Phoenix dactylifera	2	gene-LOC103697730, gene-LOC103708968
Asparagaceae	Asparagus officinalis	1	AsparagusV1_01.3469.V1.1
Asteraceae	Flaveria trinervia	2	Ftri11G00089, Ftri5G23822
Brassicaceae	Arabidopsis thaliana	2	AT4G18820.1, AT5G45720.1
Brassicaceae	Eutrema salsugineum	2	Thhalv10000763m.g.v1.0, Thhalv10024266m.g.v1.0
Brassicaceae	Schrenkiella parvula	2	Sp2g10610.v2.2, Sp7g17530.v2.2
Brassicaceae	Brassica nigra	3	BniB02g062680.2N, BniB04g016090.2N, BniB05g017530.2N
Casuarinaceae	Casuarina equisetifolia	1	Ceq04G0515
Casuarinaceae	Casuarina glauca	1	Cgl04G0617
Cymodoceaceae	Cymodocea nodosa	1	gene.Cymno02g15390
Hydrocharitaceae	Thalassia testudinum	1	gene.Thate07g19880
Malvaceae	Hibiscus hamabo Siebold & Zucc.	1	nbisL1-mrna-3823
Nitrariaceae	Nitraria sibirica	1	evm.TU.LG12.773
Plantaginaceae	Plantago ovata	1	Pov_00005539
Poaceae	Echinochloa crus-galli	6	AH02.3067, AH05.1645, BH02.3153, BH05.1797, CH02.3371 ... CH04.1049
Poaceae	Eleusine coracana subsp. coracana	4	gene-QOZ80_1AG0032060, gene-QOZ80_1BG0082270 ... gene-QOZ80_5AG0365710, gene-QOZ80_5BG0413520
Poaceae	Hordeum vulgare	2	HORVU.MOREX.r3.1HG0082180.1, HORVU.MOREX.r3.3HG0286720.1
Poaceae	Lolium multiflorum	3	gene-QYE76_016028, gene-QYE76_017515, gene-QYE76_055433
Poaceae	Oryza coarctata	4	Oco01G019910, Oco02G019860, Oco09G014940, Oco10G014870
Poaceae	Oryza sativa	2	LOC_Os01g53070.1, LOC_Os05g45340.1
Poaceae	Paspalum vaginatum	2	gene-BS78_03G265300, gene-BS78_09G211200
Poaceae	Puccinellia tenuiflora	2	Pt_Chr0503989, Pt_Chr0504077
Poaceae	Sporobolus alterniflorus	8	Chr01G014400, Chr02G010490, Chr03G015480, Chr05G022910 ... Chr06G020340, Chr08G015560, Chr12G022470, Chr22G003050
Poaceae	Thinopyrum elongatum	2	Tel1E01G546500, Tel3E01G463500
Poaceae	Triticum dicoccoides	4	gene_TRIDC1AG051480, gene_TRIDC1BG058720 ... gene_TRIDC3AG041710, gene_TRIDC3BG047070
Poaceae	Triticum aestivum	6	TraesCS1A02G348900.1, TraesCS1B02G364000.1 ... TraesCS1D02G352300.1, TraesCS3A02G281700.1, TraesCS3B02G315400.1, TraesCS3D02G281700.1
Poaceae	Zea mays	3	Zm00001eb154140_P002, Zm00001eb293320_P001 ... Zm00001eb361980_P001
Poaceae	Zoysia japonica	2	nbis-gene-25075, nbis-gene-26380
Poaceae	Zoysia macrostachya	2	Zma_g11068, Zma_g28651
Portulacaceae	Portulaca oleracea	2	evm.TU.LG18.951, evm.TU.LG20.925
Posidoniaceae	Posidonia oceanica	1	gene.Posoc04g19380
Rhizophoraceae	Bruguiera sexangula	2	evm.TU.Scaffold_12_RagTag.649, evm.TU.Scaffold_13_RagTag.271
Rhizophoraceae	Carallia pectinifolia	1	nbisL1-mrna-24075
Rhizophoraceae	Ceriops tagal	3	nbisL1-mrna-11973, nbisL1-mrna-15076, nbisL1-mrna-1603
Rhizophoraceae	Ceriops zippeliana	3	nbisL1-mrna-19806, nbisL1-mrna-19807, nbisL1-mrna-20946
Rhizophoraceae	Kandelia candel	2	evm.TU.utg000015l.164, evm.TU.utg000027l.183
Rhizophoraceae	Kandelia obovata	2	Maker00015809, Maker00017839
Rhizophoraceae	Rhizophora apiculata	2	nbisL1-mrna-5799, nbisL1-mrna-5931
Rhizophoraceae	Rhizophora mangle	2	nbisL1-mrna-16857, nbisL1-mrna-19130
Salicaceae	Populus euphratica	5	populus_peu09900, populus_peu09901, populus_peu17990 ... populus_peu17991, populus_peu37092
Solanaceae	Lycium barbarum	1	gene-LOC132622026
Solanaceae	Solanum chilense	1	SOLCI005160500
Solanaceae	Solanum pennellii	1	gene-LOC107011229
Tamaricaceae	Reaumuria soongarica	1	gene_5402
Tamaricaceae	Tamarix chinensis	2	TC06G0987, TC08G0387
Zosteraceae	Zostera marina	2	Zosma01g07080.v3.1, Zosma04g27230.v3.1