Basic Information
Locus ID:
Ag11G04857
Species & Taxonomic ID:
Apium graveolens & 4045
Genome Assembly:
GCA_009905375.1
Description:
WD repeat-containing protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr11 | 200158613 | 200165558 | - | Ag11G04857 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 7.50 | 41,200.10 Da | 35.37 | 80.27 | -0.34 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00400 | WD domain, G-beta repeat | 6 | 41 | 0.074 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 286 | 320 | 0.02 | IPR001680 |
| SUPERFAMILY | SSF50978 | WD40 repeat-like | 6 | 372 | 5.5E-38 | IPR036322 |
| Gene3D | G3DSA:2.130.10.10 | - | 2 | 180 | 4.7E-28 | IPR015943 |
| Gene3D | G3DSA:2.130.10.10 | - | 205 | 375 | 8.2E-10 | IPR015943 |
| SMART | SM00320 | WD40_4 | 89 | 128 | 1.1 | IPR001680 |
| SMART | SM00320 | WD40_4 | 131 | 172 | 0.0059 | IPR001680 |
| SMART | SM00320 | WD40_4 | 44 | 83 | 27.0 | IPR001680 |
| SMART | SM00320 | WD40_4 | 278 | 320 | 7.5E-4 | IPR001680 |
| SMART | SM00320 | WD40_4 | 334 | 373 | 280.0 | IPR001680 |
| SMART | SM00320 | WD40_4 | 1 | 41 | 7.2E-4 | IPR001680 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 285 | 320 | 10.040596 | IPR001680 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 250 | 270 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 250 | 276 | - | - |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G45760.1 | Transducin/WD40 repeat-like superfamily protein. | 0 |
| RefSeq | XP_017234793.1 | PREDICTED: WD repeat-containing protein 53 [Daucus carota subsp. sativus] | 0 |
| Q54BI5 | WD repeat-containing protein 53 homolog OS=Dictyostelium discoideum OX=44689 GN=wdr53 PE=3 SV=1 | 0 | |
| TrEMBL | A0A166CUG5 | WD_REPEATS_REGION domain-containing protein OS=Daucus carota subsp. sativus OX=79200 GN=DCAR_005186 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| PRJNA723697 | SRX10692252 | 18.309155 | Shengqin NO.2 | seed | S1-1 | S1-1 | initial formation stage (S1) |
| PRJNA723697 | SRX10692254 | 12.349026 | Shengqin NO.2 | seed | S1-3 | S1-3 | initial formation stage (S1) |
| PRJNA723697 | SRX10692255 | 13.318344 | Shengqin NO.2 | seed | S3-1 | S3-1 | middle development stage (S3) |
| PRJNA723697 | SRX10692256 | 14.966482 | Shengqin NO.2 | seed | S3-2 | S3-2 | middle development stage (S3) |
| PRJNA723697 | SRX10692257 | 12.536774 | Shengqin NO.2 | seed | S3-3 | S3-3 | middle development stage (S3) |
| PRJNA723697 | SRX10692258 | 15.658237 | Shengqin NO.2 | seed | S5-1 | S5-1 | maturation stage (S5) |
| PRJNA723697 | SRX10692259 | 15.076293 | Shengqin NO.2 | seed | S5-2 | S5-2 | maturation stage (S5) |
| PRJNA723697 | SRX10692260 | 10.046733 | Shengqin NO.2 | seed | S5-3 | S5-3 | maturation stage (S5) |
| PRJNA884666 | SRX17729272 | 40.427746 | celery | anther | W99A-r1 | male sterile line | |
| PRJNA884666 | SRX17729273 | 39.759888 | celery | anther | W99A-r2 | male sterile line | |
| PRJNA884666 | SRX17729274 | 46.761227 | celery | anther | W99A-r3 | male sterile line | |
| PRJNA884666 | SRX17729275 | 42.427509 | celery | anther | W99B-r1 | maintainer line | |
| PRJNA884666 | SRX17729276 | 43.596115 | celery | anther | W99B-r2 | maintainer line | |
| PRJNA884666 | SRX17729277 | 37.529076 | celery | anther | W99B-r3 | maintainer line | |
| PRJNA884180 | SRX17743889 | 11.517109 | var. secalinum Yablochny | collenchyma | Col_S1_rep1-1 | ||
| PRJNA884180 | SRX17748056 | 12.879778 | var. secalinum Yablochny | collenchyma | Col_S1_rep3 | biological replicate 3 | |
| PRJNA884180 | SRX17748057 | 11.815591 | var. secalinum Yablochny | collenchyma | Col_S1_rep4 | biological replicate 4 | |
| PRJNA884180 | SRX17748678 | 11.742386 | var. secalinum Yablochny | parenchyma | Par_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17748679 | 14.303284 | var. secalinum Yablochny | parenchyma | Par_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17748680 | 10.759744 | var. secalinum Yablochny | parenchyma | Par_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17748681 | 11.762326 | var. secalinum Yablochny | parenchyma | Par_S1_rep4 | Biological replicate 4 | |
| PRJNA884180 | SRX17748898 | 18.998899 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17748899 | 17.823866 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17748900 | 22.990396 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17748901 | 18.579269 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep4 | Biological replicate 4 | |
| PRJNA884180 | SRX17749129 | 16.998095 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17749130 | 15.284367 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17749131 | 15.157193 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17749132 | 17.599016 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep4 | Biological replicate 4 | |
| PRJNA1124269 | SRX24936411 | 4.28485 | leaf | CK1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936412 | 7.36265 | leaf | CK2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936413 | 5.629587 | leaf | CK3 | replicate=biological replicate3 | ||
| PRJNA1124269 | SRX24936414 | 4.784156 | leaf | D1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936415 | 7.200069 | leaf | D2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936416 | 3.064411 | leaf | D3 | replicate=biological replicate3 | ||
| PRJNA1124269 | SRX24936417 | 2.811024 | leaf | MD1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936418 | 2.606644 | leaf | MD2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936419 | 3.076381 | leaf | MD3 | replicate=biological replicate3 | ||
| PRJNA387092 | SRX2833309 | 12.858959 | shanghaihuangxin | leaf | leaves between 0.5 and 1 cm in breadth, folded; | stage 2 | |
| PRJNA387092 | SRX2833321 | 7.028988 | shanghaihuangxin | leaf | leaves between 2and 2.5 cm in breadth, nearly unfolded, with clear stem exten-sion | stage 5 | |
| PRJNA387092 | SRX2833323 | 7.636061 | shanghaihuangxin | leaf | leaves >3 cm, unfolded, with clearstem extension | stage 7 | |
| PRJNA543957 | SRX5879598 | 6.303699 | Zhangzhou lvqing | stem | Se3 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879599 | 11.132751 | Zhangzhou lvqing | stem | Se2 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879600 | 21.010454 | Zhangzhou lvqing | stem | Mock2 | mock | |
| PRJNA543957 | SRX5879601 | 19.689337 | Zhangzhou lvqing | stem | Mock1 | mock | |
| PRJNA543957 | SRX5879602 | 7.102855 | Zhangzhou lvqing | stem | Se1 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879603 | 21.721762 | Zhangzhou lvqing | stem | Mock3 | mock | |
| PRJNA609149 | SRX7815917 | 37.827351 | Jinnan Shiqin | flower bud | early flower bud | early flower bud | |
| PRJNA609149 | SRX7815918 | 41.790585 | Jinnan Shiqin | flower bud | middle flower bud | middle flower bud | |
| PRJNA609149 | SRX7815919 | 38.905094 | Jinnan Shiqin | flower bud | early flowering period | early flowering period |
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Acanthaceae | Avicennia marina | 1 | jg22166 |
| Aizoaceae | Mesembryanthemum crystallinum | 1 | gene_458 |
| Amaranthaceae | Atriplex hortensis | 1 | Ah017019 |
| Amaranthaceae | Beta vulgaris | 1 | BVRB_8g181100 |
| Amaranthaceae | Salicornia bigelovii | 2 | Sbi_jg40382, Sbi_jg50380 |
| Amaranthaceae | Salicornia europaea | 1 | Seu_jg1960 |
| Amaranthaceae | Suaeda aralocaspica | 1 | GOSA_00011526 |
| Amaranthaceae | Suaeda glauca | 2 | Sgl45527, Sgl50300 |
| Amaranthaceae | Chenopodium album | 3 | gene:ENSEOMG00000008687, gene:ENSEOMG00000032055 ... |
| Amaranthaceae | Chenopodium quinoa | 1 | CQ.Regalona.r1.8AG0007320 |
| Apiaceae | Apium graveolens | 1 | Ag11G04857 |
| Arecaceae | Cocos nucifera | 1 | COCNU_02G001930 |
| Arecaceae | Phoenix dactylifera | 1 | gene-LOC103721690 |
| Asparagaceae | Asparagus officinalis | 2 | AsparagusV1_01.1788.V1.1, AsparagusV1_01.1789.V1.1 |
| Asteraceae | Flaveria trinervia | 1 | Ftri18G06362 |
| Brassicaceae | Arabidopsis thaliana | 1 | AT5G45760.1 |
| Brassicaceae | Eutrema salsugineum | 1 | Thhalv10000923m.g.v1.0 |
| Brassicaceae | Schrenkiella parvula | 1 | Sp2g10670.v2.2 |
| Brassicaceae | Brassica nigra | 2 | BniB01g028380.2N, BniB04g016060.2N |
| Casuarinaceae | Casuarina equisetifolia | 1 | Ceq04G1338 |
| Casuarinaceae | Casuarina glauca | 1 | Cgl04G1490 |
| Cymodoceaceae | Cymodocea nodosa | 1 | gene.Cymno06g04360 |
| Dunaliellaceae | Dunaliella salina | 1 | Dusal.0069s00016.v1.0 |
| Hydrocharitaceae | Thalassia testudinum | 1 | gene.Thate02g23190 |
| Nitrariaceae | Nitraria sibirica | 1 | evm.TU.LG12.791 |
| Plantaginaceae | Plantago ovata | 1 | Pov_00038386 |
| Poaceae | Echinochloa crus-galli | 2 | BH02.263, CH02.302 |
| Poaceae | Eleusine coracana subsp. coracana | 2 | gene-QOZ80_1AG0002580, gene-QOZ80_1BG0051140 |
| Poaceae | Hordeum vulgare | 1 | HORVU.MOREX.r3.3HG0243230.1 |
| Poaceae | Lolium multiflorum | 1 | gene-QYE76_051039 |
| Poaceae | Oryza coarctata | 1 | Oco01G004610 |
| Poaceae | Oryza sativa | 1 | LOC_Os01g10790.1 |
| Poaceae | Paspalum vaginatum | 1 | gene-BS78_03G024300 |
| Poaceae | Puccinellia tenuiflora | 2 | Pt_Chr0205167, Pt_Chr0205210 |
| Poaceae | Sporobolus alterniflorus | 2 | Chr02G027840, Chr05G005600 |
| Poaceae | Thinopyrum elongatum | 1 | Tel3E01G231100 |
| Poaceae | Triticum dicoccoides | 2 | gene_TRIDC3AG017670, gene_TRIDC3BG021960 |
| Poaceae | Triticum aestivum | 3 | TraesCS3A02G137100.1, TraesCS3B02G155000.1 ... |
| Poaceae | Zea mays | 1 | Zm00001eb120830_P005 |
| Poaceae | Zoysia macrostachya | 1 | Zma_g9597 |
| Portulacaceae | Portulaca oleracea | 1 | evm.TU.LG11.1669 |
| Posidoniaceae | Posidonia oceanica | 1 | gene.Posoc03g17780 |
| Rhizophoraceae | Carallia pectinifolia | 1 | nbisL1-mrna-30751 |
| Rhizophoraceae | Ceriops tagal | 1 | nbisL1-mrna-14418 |
| Rhizophoraceae | Ceriops zippeliana | 1 | nbisL1-mrna-20960 |
| Rhizophoraceae | Kandelia candel | 1 | evm.TU.utg000015l.173 |
| Rhizophoraceae | Kandelia obovata | 1 | Maker00015608 |
| Rhizophoraceae | Rhizophora apiculata | 1 | nbisL1-mrna-5922 |
| Rhizophoraceae | Rhizophora mangle | 1 | nbisL1-mrna-16844 |
| Salicaceae | Populus euphratica | 2 | populus_peu18006, populus_peu18008 |
| Solanaceae | Solanum chilense | 1 | SOLCI002538600 |
| Solanaceae | Solanum pennellii | 1 | gene-LOC107011204 |
| Tamaricaceae | Reaumuria soongarica | 1 | gene_10597 |
| Tamaricaceae | Tamarix chinensis | 1 | TC08G0407 |
| Zosteraceae | Zostera marina | 1 | Zosma05g21170.v3.1 |