halophFGD

Basic Information

Locus ID: Ag11G04843

Species & Taxonomic ID: Apium graveolens & 4045

Genome Assembly: GCA_009905375.1

Description: LRR receptor-like serine threonine-protein kinase

Maps and Mapping Data

Chromosome	Start	End	Strand	ID
chr11	199499459	199502233	+	Ag11G04843

Protein Data

Protein Properties:

Theoretical pI	Molecular Weight	Instability Index	Aliphatic Index	GRAVY
8.71	75,727.05 Da	38.32	92.74	-0.18

Protein Domain:

Category	ID	Description	Start	End	Evalue/Score	InterPro ID
Pfam	PF07714	Protein tyrosine and serine/threonine kinase	404	577	3.3E-19	IPR001245
Pfam	PF13855	Leucine rich repeat	57	117	1.9E-9	IPR001611
SUPERFAMILY	SSF52058	L domain-like	53	240	7.37E-33	-
SUPERFAMILY	SSF56112	Protein kinase-like (PK-like)	377	665	1.37E-43	IPR011009
Gene3D	G3DSA:3.80.10.10	Ribonuclease Inhibitor	29	123	1.0E-16	IPR032675
Gene3D	G3DSA:1.10.510.10	Transferase(Phosphotransferase) domain 1	476	578	1.8E-15	-
Gene3D	G3DSA:1.10.510.10	Transferase(Phosphotransferase) domain 1	579	675	6.4E-13	-
Gene3D	G3DSA:3.80.10.10	Ribonuclease Inhibitor	124	268	1.6E-21	IPR032675
Gene3D	G3DSA:3.30.200.20	Phosphorylase Kinase; domain 1	359	475	1.6E-21	-
ProSiteProfiles	PS51450	Leucine-rich repeat profile.	156	178	7.781261	IPR001611
ProSiteProfiles	PS50011	Protein kinase domain profile.	400	672	19.01519	IPR000719
PRINTS	PR00019	Leucine-rich repeat signature	83	96	7.3E-5	-
PRINTS	PR00019	Leucine-rich repeat signature	154	167	7.3E-5	-

Gene Ontology

Biological Process:

GO:0006468 (protein phosphorylation)

Molecular Function:

GO:0004672 (protein kinase activity) GO:0005515 (protein binding) GO:0005524 (ATP binding)

Best hit

Source	Best Hit ID	Description
TAIR	AT5G45800.1	Leucine-rich repeat protein kinase family protein.
RefSeq	XP_017232960.1	PREDICTED: probable LRR receptor-like serine/threonine-protein kinase At2g24230 [Daucus carota subsp. sativus]
Swiss-Prot	Q9FK63	Calmodulin-binding receptor kinase CaMRLK OS=Arabidopsis thaliana OX=3702 GN=CAMRLK PE=1 SV=1
TrEMBL	A0A162AQG8	Protein kinase domain-containing protein OS=Daucus carota subsp. sativus OX=79200 GN=DCAR_005210 PE=4 SV=1

Expression

BioProject	Accession	TPM	Cultivar	Tissue	Development Stage	Sample Name	Description
PRJNA723697	SRX10692252	2.926317	Shengqin NO.2	seed	S1-1	S1-1	initial formation stage (S1)
PRJNA723697	SRX10692254	2.48916	Shengqin NO.2	seed	S1-3	S1-3	initial formation stage (S1)
PRJNA723697	SRX10692255	2.439727	Shengqin NO.2	seed	S3-1	S3-1	middle development stage (S3)
PRJNA723697	SRX10692256	2.126593	Shengqin NO.2	seed	S3-2	S3-2	middle development stage (S3)
PRJNA723697	SRX10692257	2.461598	Shengqin NO.2	seed	S3-3	S3-3	middle development stage (S3)
PRJNA723697	SRX10692258	2.720123	Shengqin NO.2	seed	S5-1	S5-1	maturation stage (S5)
PRJNA723697	SRX10692259	2.421751	Shengqin NO.2	seed	S5-2	S5-2	maturation stage (S5)
PRJNA723697	SRX10692260	0.798921	Shengqin NO.2	seed	S5-3	S5-3	maturation stage (S5)
PRJNA884666	SRX17729272	2.451416	celery	anther		W99A-r1	male sterile lineÂ
PRJNA884666	SRX17729273	2.379585	celery	anther		W99A-r2	male sterile lineÂ
PRJNA884666	SRX17729274	2.657082	celery	anther		W99A-r3	male sterile lineÂ
PRJNA884666	SRX17729275	1.341705	celery	anther		W99B-r1	maintainer line
PRJNA884666	SRX17729276	1.837595	celery	anther		W99B-r2	maintainer line
PRJNA884666	SRX17729277	2.181674	celery	anther		W99B-r3	maintainer line
PRJNA884180	SRX17743889	0.205267	var. secalinum Yablochny	collenchyma		Col_S1_rep1-1
PRJNA884180	SRX17748056	0.963434	var. secalinum Yablochny	collenchyma		Col_S1_rep3	biological replicate 3
PRJNA884180	SRX17748057	1.5676	var. secalinum Yablochny	collenchyma		Col_S1_rep4	biological replicate 4
PRJNA884180	SRX17748678	1.772444	var. secalinum Yablochny	parenchyma		Par_S1_rep1	Biological replicate 1
PRJNA884180	SRX17748679	2.594353	var. secalinum Yablochny	parenchyma		Par_S1_rep2	Biological replicate 2
PRJNA884180	SRX17748680	4.392291	var. secalinum Yablochny	parenchyma		Par_S1_rep3	Biological replicate 3
PRJNA884180	SRX17748681	2.268142	var. secalinum Yablochny	parenchyma		Par_S1_rep4	Biological replicate 4
PRJNA884180	SRX17748898	7.071046	var. secalinum Yablochny	vascular bundle		Vas_S1_rep1	Biological replicate 1
PRJNA884180	SRX17748899	8.633015	var. secalinum Yablochny	vascular bundle		Vas_S1_rep2	Biological replicate 2
PRJNA884180	SRX17748900	9.177417	var. secalinum Yablochny	vascular bundle		Vas_S1_rep3	Biological replicate 3
PRJNA884180	SRX17748901	7.299554	var. secalinum Yablochny	vascular bundle		Vas_S1_rep4	Biological replicate 4
PRJNA884180	SRX17749129	2.7318	var. secalinum Yablochny	part of the celery petiole without collenchyma strands		Collenchyma-free_S1_rep1	Biological replicate 1
PRJNA884180	SRX17749130	2.03858	var. secalinum Yablochny	part of the celery petiole without collenchyma strands		Collenchyma-free_S1_rep2	Biological replicate 2
PRJNA884180	SRX17749131	3.782675	var. secalinum Yablochny	part of the celery petiole without collenchyma strands		Collenchyma-free_S1_rep3	Biological replicate 3
PRJNA884180	SRX17749132	1.779588	var. secalinum Yablochny	part of the celery petiole without collenchyma strands		Collenchyma-free_S1_rep4	Biological replicate 4
PRJNA1124269	SRX24936411	0.303056		leaf		CK1	replicate=biological replicate1
PRJNA1124269	SRX24936412	0.176155		leaf		CK2	replicate=biological replicate2
PRJNA1124269	SRX24936413	0.646273		leaf		CK3	replicate=biological replicate3
PRJNA1124269	SRX24936414	1.536318		leaf		D1	replicate=biological replicate1
PRJNA1124269	SRX24936415	2.64285		leaf		D2	replicate=biological replicate2
PRJNA1124269	SRX24936416	1.865513		leaf		D3	replicate=biological replicate3
PRJNA1124269	SRX24936417	0.652066		leaf		MD1	replicate=biological replicate1
PRJNA1124269	SRX24936418	1.225993		leaf		MD2	replicate=biological replicate2
PRJNA1124269	SRX24936419	1.015692		leaf		MD3	replicate=biological replicate3
PRJNA387092	SRX2833309	3.426439	shanghaihuangxin	leaf	leaves between 0.5 and 1 cm in breadth, folded;	stage 2
PRJNA387092	SRX2833321	1.906281	shanghaihuangxin	leaf	leaves between 2and 2.5 cm in breadth, nearly unfolded, with clear stem exten-sion	stage 5
PRJNA387092	SRX2833323	2.940162	shanghaihuangxin	leaf	leaves >3 cm, unfolded, with clearstem extension	stage 7
PRJNA543957	SRX5879598	2.284151	Zhangzhou lvqing	stem		Se3	100 ppm Na2SeO4
PRJNA543957	SRX5879599	4.243598	Zhangzhou lvqing	stem		Se2	100 ppm Na2SeO4
PRJNA543957	SRX5879600	10.479568	Zhangzhou lvqing	stem		Mock2	mock
PRJNA543957	SRX5879601	9.207082	Zhangzhou lvqing	stem		Mock1	mock
PRJNA543957	SRX5879602	1.680785	Zhangzhou lvqing	stem		Se1	100 ppm Na2SeO4
PRJNA543957	SRX5879603	2.431007	Zhangzhou lvqing	stem		Mock3	mock
PRJNA609149	SRX7815917	2.895811	Jinnan Shiqin	flower bud	early flower bud	early flower bud
PRJNA609149	SRX7815918	6.203789	Jinnan Shiqin	flower bud	middle flower bud	middle flower bud
PRJNA609149	SRX7815919	4.108691	Jinnan Shiqin	flower bud	early flowering period	early flowering period

Network

🔍 Co-expression Network

🔍 Protein-Protein Interaction Network

Orthology

Family	Species	Count	Orthologous Genes
Acanthaceae	Avicennia marina	1	jg22160
Aizoaceae	Mesembryanthemum crystallinum	1	gene_22332
Amaranthaceae	Atriplex hortensis	1	Ah017042
Amaranthaceae	Beta vulgaris	1	BVRB_8g180990
Amaranthaceae	Salicornia bigelovii	2	Sbi_jg40400, Sbi_jg50397
Amaranthaceae	Salicornia europaea	1	Seu_jg1974
Amaranthaceae	Suaeda aralocaspica	1	GOSA_00011546
Amaranthaceae	Suaeda glauca	2	Sgl43853, Sgl48622
Amaranthaceae	Chenopodium album	3	gene:ENSEOMG00000010651, gene:ENSEOMG00000032960 ... gene:ENSEOMG00000044861
Amaranthaceae	Chenopodium quinoa	2	CQ.Regalona.r1.8AG0007190, CQ.Regalona.r1.8BG0008080
Anacardiaceae	Pistacia vera	1	pistato.v30072150
Apiaceae	Apium graveolens	5	Ag11G04843, Ag6G01073, Ag7G00830, AgUnG00284, AgUnG00285
Arecaceae	Cocos nucifera	2	COCNU_02G002420, COCNU_03G013770
Arecaceae	Phoenix dactylifera	2	gene-LOC103701183, gene-LOC103707330
Asteraceae	Flaveria trinervia	1	Ftri5G14489
Brassicaceae	Arabidopsis thaliana	1	AT5G45800.1
Brassicaceae	Eutrema salsugineum	1	Thhalv10000810m.g.v1.0
Brassicaceae	Schrenkiella parvula	1	Sp2g10720.v2.2
Brassicaceae	Brassica nigra	1	BniB02g062750.2N
Casuarinaceae	Casuarina equisetifolia	1	Ceq04G1322
Casuarinaceae	Casuarina glauca	1	Cgl04G1477
Cymodoceaceae	Cymodocea nodosa	1	gene.Cymno06g04390
Hydrocharitaceae	Thalassia testudinum	2	gene.Thate02g23010, gene.Thate02g23020
Malvaceae	Hibiscus hamabo Siebold & Zucc.	1	nbisL1-mrna-7567
Nitrariaceae	Nitraria sibirica	1	evm.TU.LG12.808
Plantaginaceae	Plantago ovata	1	Pov_00005567
Plumbaginaceae	Limonium bicolor	2	Lb1G00380, Lb1G00412
Poaceae	Echinochloa crus-galli	7	AH06.1924, AH07.993, BH05.143, BH06.1770, BH07.1109 ... CH06.1964, CH07.881
Poaceae	Eleusine coracana subsp. coracana	4	gene-QOZ80_2AG0107510, gene-QOZ80_2BG0161130 ... gene-QOZ80_6AG0542290, gene-QOZ80_6BG0495520
Poaceae	Hordeum vulgare	1	HORVU.MOREX.r3.7HG0719210.1
Poaceae	Lolium multiflorum	2	gene-QYE76_021879, gene-QYE76_034317
Poaceae	Oryza coarctata	4	Oco03G006520, Oco04G006770, Oco11G010630, Oco12G010700
Poaceae	Oryza sativa	2	LOC_Os02g14480.1, LOC_Os06g35200.1
Poaceae	Paspalum vaginatum	2	gene-BS78_04G100500, gene-BS78_K185300
Poaceae	Puccinellia tenuiflora	3	Pt_Chr0206420, Pt_Chr0400278, Pt_Chr0400433
Poaceae	Sporobolus alterniflorus	5	Chr06G032060, Chr0G013850, Chr10G015990, Chr11G006400 ... Chr15G023520
Poaceae	Thinopyrum elongatum	1	Tel7E01G634500
Poaceae	Triticum dicoccoides	2	gene_TRIDC7AG049170, gene_TRIDC7BG044670
Poaceae	Triticum aestivum	3	TraesCS7A02G352300.1, TraesCS7B02G275700.1 ... TraesCS7D02G370700.1
Poaceae	Zea mays	2	Zm00001eb204660_P001, Zm00001eb383780_P001
Poaceae	Zoysia japonica	2	nbis-gene-10293, nbis-gene-53124
Poaceae	Zoysia macrostachya	2	Zma_g12500, Zma_g30654
Portulacaceae	Portulaca oleracea	2	evm.TU.LG18.1383, evm.TU.LG20.504
Posidoniaceae	Posidonia oceanica	1	gene.Posoc03g17850
Rhizophoraceae	Bruguiera sexangula	1	evm.TU.Scaffold_12_RagTag.799
Rhizophoraceae	Carallia pectinifolia	1	nbisL1-mrna-24037
Rhizophoraceae	Ceriops tagal	1	nbisL1-mrna-19054
Rhizophoraceae	Ceriops zippeliana	1	nbisL1-mrna-19942
Rhizophoraceae	Kandelia candel	1	evm.TU.utg000027l.152
Rhizophoraceae	Kandelia obovata	1	Maker00006317
Rhizophoraceae	Rhizophora apiculata	1	nbisL1-mrna-20930
Rhizophoraceae	Rhizophora mangle	1	nbisL1-mrna-21965
Salicaceae	Populus euphratica	3	populus_peu09929, populus_peu18023, populus_peu18040
Solanaceae	Lycium barbarum	1	gene-LOC132622685
Solanaceae	Solanum chilense	1	SOLCI005478100
Solanaceae	Solanum pennellii	1	gene-LOC107011876
Tamaricaceae	Reaumuria soongarica	1	gene_9750
Tamaricaceae	Tamarix chinensis	1	TC08G0427
Zosteraceae	Zostera marina	2	Zosma05g21180.v3.1, Zosma05g25880.v3.1