Basic Information
Locus ID:
Ag11G04767
Species & Taxonomic ID:
Apium graveolens & 4045
Genome Assembly:
GCA_009905375.1
Description:
f-box protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr11 | 197879359 | 197882865 | - | Ag11G04767 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.63 | 68,811.31 Da | 42.42 | 87.16 | -0.26 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00646 | F-box domain | 11 | 55 | 2.3E-6 | IPR001810 |
| SUPERFAMILY | SSF81383 | F-box domain | 4 | 67 | 1.09E-10 | IPR036047 |
| Gene3D | G3DSA:1.20.1280.50 | - | 4 | 82 | 2.2E-6 | - |
| SMART | SM00256 | fbox_2 | 14 | 54 | 2.4E-4 | IPR001810 |
| ProSiteProfiles | PS50181 | F-box domain profile. | 8 | 54 | 9.974368 | IPR001810 |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G39450.1 | F-box family protein. | 0 |
| RefSeq | XP_017258883.1 | PREDICTED: F-box protein At5g39450-like [Daucus carota subsp. sativus] | 0 |
| Q8RWD6 | F-box protein At5g39450 OS=Arabidopsis thaliana OX=3702 GN=At5g39450 PE=2 SV=1 | 0 | |
| TrEMBL | A0A161ZWU7 | F-box domain-containing protein OS=Daucus carota subsp. sativus OX=79200 GN=DCAR_019993 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| PRJNA723697 | SRX10692252 | 15.100103 | Shengqin NO.2 | seed | S1-1 | S1-1 | initial formation stage (S1) |
| PRJNA723697 | SRX10692254 | 13.544365 | Shengqin NO.2 | seed | S1-3 | S1-3 | initial formation stage (S1) |
| PRJNA723697 | SRX10692255 | 9.406911 | Shengqin NO.2 | seed | S3-1 | S3-1 | middle development stage (S3) |
| PRJNA723697 | SRX10692256 | 12.084952 | Shengqin NO.2 | seed | S3-2 | S3-2 | middle development stage (S3) |
| PRJNA723697 | SRX10692257 | 11.482898 | Shengqin NO.2 | seed | S3-3 | S3-3 | middle development stage (S3) |
| PRJNA723697 | SRX10692258 | 7.369451 | Shengqin NO.2 | seed | S5-1 | S5-1 | maturation stage (S5) |
| PRJNA723697 | SRX10692259 | 7.562638 | Shengqin NO.2 | seed | S5-2 | S5-2 | maturation stage (S5) |
| PRJNA723697 | SRX10692260 | 3.441366 | Shengqin NO.2 | seed | S5-3 | S5-3 | maturation stage (S5) |
| PRJNA884666 | SRX17729272 | 26.398767 | celery | anther | W99A-r1 | male sterile line | |
| PRJNA884666 | SRX17729273 | 24.649694 | celery | anther | W99A-r2 | male sterile line | |
| PRJNA884666 | SRX17729274 | 27.74505 | celery | anther | W99A-r3 | male sterile line | |
| PRJNA884666 | SRX17729275 | 23.525604 | celery | anther | W99B-r1 | maintainer line | |
| PRJNA884666 | SRX17729276 | 22.791029 | celery | anther | W99B-r2 | maintainer line | |
| PRJNA884666 | SRX17729277 | 19.188459 | celery | anther | W99B-r3 | maintainer line | |
| PRJNA884180 | SRX17743889 | 10.576716 | var. secalinum Yablochny | collenchyma | Col_S1_rep1-1 | ||
| PRJNA884180 | SRX17748056 | 11.16398 | var. secalinum Yablochny | collenchyma | Col_S1_rep3 | biological replicate 3 | |
| PRJNA884180 | SRX17748057 | 10.912327 | var. secalinum Yablochny | collenchyma | Col_S1_rep4 | biological replicate 4 | |
| PRJNA884180 | SRX17748678 | 16.081186 | var. secalinum Yablochny | parenchyma | Par_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17748679 | 11.2001 | var. secalinum Yablochny | parenchyma | Par_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17748680 | 15.959922 | var. secalinum Yablochny | parenchyma | Par_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17748681 | 17.962633 | var. secalinum Yablochny | parenchyma | Par_S1_rep4 | Biological replicate 4 | |
| PRJNA884180 | SRX17748898 | 17.379395 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17748899 | 15.604976 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17748900 | 16.420008 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17748901 | 14.255545 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep4 | Biological replicate 4 | |
| PRJNA884180 | SRX17749129 | 13.42323 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17749130 | 13.736921 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17749131 | 12.585025 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17749132 | 15.937117 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep4 | Biological replicate 4 | |
| PRJNA1124269 | SRX24936411 | 17.000427 | leaf | CK1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936412 | 16.035782 | leaf | CK2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936413 | 16.433605 | leaf | CK3 | replicate=biological replicate3 | ||
| PRJNA1124269 | SRX24936414 | 16.838825 | leaf | D1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936415 | 17.201382 | leaf | D2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936416 | 16.790743 | leaf | D3 | replicate=biological replicate3 | ||
| PRJNA1124269 | SRX24936417 | 22.793821 | leaf | MD1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936418 | 19.182858 | leaf | MD2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936419 | 23.780033 | leaf | MD3 | replicate=biological replicate3 | ||
| PRJNA387092 | SRX2833309 | 17.194008 | shanghaihuangxin | leaf | leaves between 0.5 and 1 cm in breadth, folded; | stage 2 | |
| PRJNA387092 | SRX2833321 | 13.741591 | shanghaihuangxin | leaf | leaves between 2and 2.5 cm in breadth, nearly unfolded, with clear stem exten-sion | stage 5 | |
| PRJNA387092 | SRX2833323 | 8.618383 | shanghaihuangxin | leaf | leaves >3 cm, unfolded, with clearstem extension | stage 7 | |
| PRJNA543957 | SRX5879598 | 25.600056 | Zhangzhou lvqing | stem | Se3 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879599 | 33.151672 | Zhangzhou lvqing | stem | Se2 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879600 | 56.363667 | Zhangzhou lvqing | stem | Mock2 | mock | |
| PRJNA543957 | SRX5879601 | 45.021748 | Zhangzhou lvqing | stem | Mock1 | mock | |
| PRJNA543957 | SRX5879602 | 19.662561 | Zhangzhou lvqing | stem | Se1 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879603 | 47.055542 | Zhangzhou lvqing | stem | Mock3 | mock | |
| PRJNA609149 | SRX7815917 | 18.107712 | Jinnan Shiqin | flower bud | early flower bud | early flower bud | |
| PRJNA609149 | SRX7815918 | 16.622292 | Jinnan Shiqin | flower bud | middle flower bud | middle flower bud | |
| PRJNA609149 | SRX7815919 | 16.3342 | Jinnan Shiqin | flower bud | early flowering period | early flowering period |
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Acanthaceae | Avicennia marina | 1 | jg19518 |
| Aizoaceae | Mesembryanthemum crystallinum | 1 | gene_11867 |
| Amaranthaceae | Atriplex hortensis | 1 | Ah005447 |
| Amaranthaceae | Beta vulgaris | 1 | BVRB_4g078780 |
| Amaranthaceae | Salicornia bigelovii | 2 | Sbi_jg17670, Sbi_jg62346 |
| Amaranthaceae | Salicornia europaea | 1 | Seu_jg916 |
| Amaranthaceae | Suaeda aralocaspica | 1 | GOSA_00007314 |
| Amaranthaceae | Suaeda glauca | 2 | Sgl24014, Sgl29195 |
| Amaranthaceae | Chenopodium album | 3 | gene:ENSEOMG00000010309, gene:ENSEOMG00000028310 ... |
| Amaranthaceae | Chenopodium quinoa | 2 | CQ.Regalona.r1.4AG0005550, CQ.Regalona.r1.4BG0005540 |
| Anacardiaceae | Pistacia vera | 1 | pistato.v30201750 |
| Apiaceae | Apium graveolens | 1 | Ag11G04767 |
| Arecaceae | Cocos nucifera | 1 | COCNU_01G020290 |
| Arecaceae | Phoenix dactylifera | 1 | gene-LOC120112985 |
| Asparagaceae | Asparagus officinalis | 1 | AsparagusV1_04.2762.V1.1 |
| Asteraceae | Flaveria trinervia | 1 | Ftri17G17504 |
| Brassicaceae | Arabidopsis thaliana | 4 | AT5G39450.1, AT5G39460.1, AT5G39480.1, AT5G39490.1 |
| Brassicaceae | Eutrema salsugineum | 1 | Thhalv10027700m.g.v1.0 |
| Brassicaceae | Schrenkiella parvula | 4 | Sp7g02470.v2.2, Sp7g02490.v2.2, Sp7g02520.v2.2 ... |
| Brassicaceae | Brassica nigra | 6 | BniB01g023640.2N, BniB01g028090.2N, BniB01g028130.2N ... |
| Casuarinaceae | Casuarina equisetifolia | 1 | Ceq06G1691 |
| Casuarinaceae | Casuarina glauca | 1 | Cgl06G1753 |
| Cymodoceaceae | Cymodocea nodosa | 1 | gene.Cymno05g00940 |
| Dunaliellaceae | Dunaliella salina | 1 | Dusal.0115s00015.v1.0 |
| Malvaceae | Hibiscus hamabo Siebold & Zucc. | 1 | nbisL1-mrna-7233 |
| Nitrariaceae | Nitraria sibirica | 1 | evm.TU.LG02.908 |
| Plumbaginaceae | Limonium bicolor | 2 | Lb2G13831, Lb6G29927 |
| Poaceae | Echinochloa crus-galli | 3 | AH08.35, BH01.1430, CH08.36 |
| Poaceae | Eleusine coracana subsp. coracana | 2 | gene-QOZ80_8AG0614440, gene-QOZ80_8BG0641940 |
| Poaceae | Hordeum vulgare | 1 | HORVU.MOREX.r3.7HG0706850.1 |
| Poaceae | Lolium multiflorum | 1 | gene-QYE76_033633 |
| Poaceae | Oryza coarctata | 1 | Oco16G000340 |
| Poaceae | Oryza sativa | 1 | LOC_Os08g01430.1 |
| Poaceae | Paspalum vaginatum | 1 | gene-BS78_07G005200 |
| Poaceae | Puccinellia tenuiflora | 3 | Pt_Chr0104058, Pt_Chr0401260, Pt_Chr0702110 |
| Poaceae | Sporobolus alterniflorus | 1 | Chr20G013840 |
| Poaceae | Thinopyrum elongatum | 1 | Tel7E01G556500 |
| Poaceae | Triticum dicoccoides | 2 | gene_TRIDC7AG045450, gene_TRIDC7BG037410 |
| Poaceae | Triticum aestivum | 3 | TraesCS7A02G324600.1, TraesCS7B02G225100.1 ... |
| Poaceae | Zea mays | 1 | Zm00001eb174460_P001 |
| Poaceae | Zoysia japonica | 1 | nbis-gene-51969 |
| Poaceae | Zoysia macrostachya | 1 | Zma_g22331 |
| Portulacaceae | Portulaca oleracea | 2 | evm.TU.LG18.1479, evm.TU.LG20.400 |
| Posidoniaceae | Posidonia oceanica | 1 | gene.Posoc01g02190 |
| Rhizophoraceae | Bruguiera sexangula | 1 | evm.TU.Scaffold_6_RagTag.1493 |
| Rhizophoraceae | Ceriops tagal | 1 | nbisL1-mrna-14828 |
| Rhizophoraceae | Ceriops zippeliana | 1 | nbisL1-mrna-22655 |
| Rhizophoraceae | Kandelia candel | 1 | evm.TU.utg000011l.913 |
| Rhizophoraceae | Kandelia obovata | 1 | Maker00007248 |
| Rhizophoraceae | Rhizophora apiculata | 1 | nbisL1-mrna-23072 |
| Rhizophoraceae | Rhizophora mangle | 1 | nbisL1-mrna-2926 |
| Salicaceae | Populus euphratica | 2 | populus_peu13691, populus_peu22851 |
| Solanaceae | Lycium barbarum | 1 | gene-LOC132627642 |
| Solanaceae | Solanum chilense | 1 | SOLCI000394500 |
| Solanaceae | Solanum pennellii | 1 | gene-LOC107018139 |
| Tamaricaceae | Reaumuria soongarica | 1 | gene_17028 |
| Tamaricaceae | Tamarix chinensis | 1 | TC02G1373 |