Basic Information
Locus ID:
Ag11G04729
Species & Taxonomic ID:
Apium graveolens & 4045
Genome Assembly:
GCA_009905375.1
Description:
FAS-associated factor
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr11 | 196661464 | 196670355 | + | Ag11G04729 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.16 | 49,405.14 Da | 46.31 | 87.72 | -0.24 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd01767 | UBX | 373 | 444 | 5.84354E-20 | - |
| CDD | cd02958 | UAS | 152 | 267 | 8.90293E-37 | - |
| CDD | cd14353 | UBA_FAF | 11 | 42 | 2.45761E-11 | - |
| Pfam | PF00789 | UBX domain | 366 | 444 | 4.0E-18 | IPR001012 |
| Pfam | PF14555 | UBA-like domain | 6 | 46 | 1.1E-12 | - |
| SUPERFAMILY | SSF46934 | UBA-like | 5 | 44 | 6.63E-5 | IPR009060 |
| SUPERFAMILY | SSF52833 | Thioredoxin-like | 131 | 276 | 1.48E-24 | IPR036249 |
| SUPERFAMILY | SSF54236 | Ubiquitin-like | 329 | 444 | 2.48E-24 | IPR029071 |
| Gene3D | G3DSA:3.10.20.90 | - | 368 | 445 | 3.1E-23 | - |
| Gene3D | G3DSA:1.10.8.10 | - | 2 | 49 | 5.1E-11 | - |
| Gene3D | G3DSA:3.40.30.10 | Glutaredoxin | 122 | 274 | 7.0E-38 | - |
| SMART | SM00166 | ubx_3 | 364 | 445 | 1.8E-8 | IPR001012 |
| SMART | SM00594 | 45neu3 | 136 | 262 | 6.3E-44 | IPR006577 |
| ProSiteProfiles | PS50033 | UBX domain profile. | 366 | 443 | 18.718479 | IPR001012 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 324 | 343 | - | - |
| Coils | Coil | Coil | 297 | 355 | - | - |
Gene Ontology
Molecular Function:
KEGG Pathway
KO Term:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT4G10790.1 | UBX domain-containing protein. | 0 |
| RefSeq | XP_017236489.1 | PREDICTED: plant UBX domain-containing protein 10 [Daucus carota subsp. sativus] | 0 |
| Q9M0N1 | Plant UBX domain-containing protein 10 OS=Arabidopsis thaliana OX=3702 GN=PUX10 PE=2 SV=1 | 0 | |
| TrEMBL | A0A162ATJ5 | UBX domain-containing protein OS=Daucus carota subsp. sativus OX=79200 GN=DCAR_006530 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| PRJNA723697 | SRX10692252 | 46.71859 | Shengqin NO.2 | seed | S1-1 | S1-1 | initial formation stage (S1) |
| PRJNA723697 | SRX10692254 | 49.836517 | Shengqin NO.2 | seed | S1-3 | S1-3 | initial formation stage (S1) |
| PRJNA723697 | SRX10692255 | 52.729507 | Shengqin NO.2 | seed | S3-1 | S3-1 | middle development stage (S3) |
| PRJNA723697 | SRX10692256 | 55.702557 | Shengqin NO.2 | seed | S3-2 | S3-2 | middle development stage (S3) |
| PRJNA723697 | SRX10692257 | 52.129086 | Shengqin NO.2 | seed | S3-3 | S3-3 | middle development stage (S3) |
| PRJNA723697 | SRX10692258 | 66.83699 | Shengqin NO.2 | seed | S5-1 | S5-1 | maturation stage (S5) |
| PRJNA723697 | SRX10692259 | 58.767525 | Shengqin NO.2 | seed | S5-2 | S5-2 | maturation stage (S5) |
| PRJNA723697 | SRX10692260 | 73.978165 | Shengqin NO.2 | seed | S5-3 | S5-3 | maturation stage (S5) |
| PRJNA884666 | SRX17729272 | 72.84874 | celery | anther | W99A-r1 | male sterile line | |
| PRJNA884666 | SRX17729273 | 71.351166 | celery | anther | W99A-r2 | male sterile line | |
| PRJNA884666 | SRX17729274 | 67.394585 | celery | anther | W99A-r3 | male sterile line | |
| PRJNA884666 | SRX17729275 | 71.824127 | celery | anther | W99B-r1 | maintainer line | |
| PRJNA884666 | SRX17729276 | 71.225815 | celery | anther | W99B-r2 | maintainer line | |
| PRJNA884666 | SRX17729277 | 73.595589 | celery | anther | W99B-r3 | maintainer line | |
| PRJNA884180 | SRX17743889 | 33.383526 | var. secalinum Yablochny | collenchyma | Col_S1_rep1-1 | ||
| PRJNA884180 | SRX17748056 | 42.555569 | var. secalinum Yablochny | collenchyma | Col_S1_rep3 | biological replicate 3 | |
| PRJNA884180 | SRX17748057 | 40.276791 | var. secalinum Yablochny | collenchyma | Col_S1_rep4 | biological replicate 4 | |
| PRJNA884180 | SRX17748678 | 58.054546 | var. secalinum Yablochny | parenchyma | Par_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17748679 | 47.831535 | var. secalinum Yablochny | parenchyma | Par_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17748680 | 65.480591 | var. secalinum Yablochny | parenchyma | Par_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17748681 | 60.847576 | var. secalinum Yablochny | parenchyma | Par_S1_rep4 | Biological replicate 4 | |
| PRJNA884180 | SRX17748898 | 47.007599 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17748899 | 51.537304 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17748900 | 50.883022 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17748901 | 48.848766 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep4 | Biological replicate 4 | |
| PRJNA884180 | SRX17749129 | 59.742455 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17749130 | 51.493725 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17749131 | 56.441635 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17749132 | 60.806519 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep4 | Biological replicate 4 | |
| PRJNA1124269 | SRX24936411 | 70.598129 | leaf | CK1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936412 | 68.178192 | leaf | CK2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936413 | 64.786461 | leaf | CK3 | replicate=biological replicate3 | ||
| PRJNA1124269 | SRX24936414 | 128.729828 | leaf | D1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936415 | 63.181664 | leaf | D2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936416 | 113.654762 | leaf | D3 | replicate=biological replicate3 | ||
| PRJNA1124269 | SRX24936417 | 78.652985 | leaf | MD1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936418 | 101.156219 | leaf | MD2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936419 | 89.777306 | leaf | MD3 | replicate=biological replicate3 | ||
| PRJNA387092 | SRX2833309 | 48.028038 | shanghaihuangxin | leaf | leaves between 0.5 and 1 cm in breadth, folded; | stage 2 | |
| PRJNA387092 | SRX2833321 | 32.362236 | shanghaihuangxin | leaf | leaves between 2and 2.5 cm in breadth, nearly unfolded, with clear stem exten-sion | stage 5 | |
| PRJNA387092 | SRX2833323 | 26.64048 | shanghaihuangxin | leaf | leaves >3 cm, unfolded, with clearstem extension | stage 7 | |
| PRJNA543957 | SRX5879598 | 104.996704 | Zhangzhou lvqing | stem | Se3 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879599 | 97.207031 | Zhangzhou lvqing | stem | Se2 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879600 | 155.408005 | Zhangzhou lvqing | stem | Mock2 | mock | |
| PRJNA543957 | SRX5879601 | 126.407173 | Zhangzhou lvqing | stem | Mock1 | mock | |
| PRJNA543957 | SRX5879602 | 108.011345 | Zhangzhou lvqing | stem | Se1 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879603 | 94.255638 | Zhangzhou lvqing | stem | Mock3 | mock | |
| PRJNA609149 | SRX7815917 | 49.019588 | Jinnan Shiqin | flower bud | early flower bud | early flower bud | |
| PRJNA609149 | SRX7815918 | 54.284103 | Jinnan Shiqin | flower bud | middle flower bud | middle flower bud | |
| PRJNA609149 | SRX7815919 | 50.650391 | Jinnan Shiqin | flower bud | early flowering period | early flowering period |
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Acanthaceae | Avicennia marina | 2 | jg4996, jg7481 |
| Aizoaceae | Mesembryanthemum crystallinum | 1 | gene_1737 |
| Amaranthaceae | Atriplex hortensis | 1 | Ah003965 |
| Amaranthaceae | Beta vulgaris | 1 | BVRB_5g103680 |
| Amaranthaceae | Salicornia bigelovii | 2 | Sbi_jg24110, Sbi_jg7949 |
| Amaranthaceae | Salicornia europaea | 1 | Seu_jg12088 |
| Amaranthaceae | Suaeda aralocaspica | 1 | GOSA_00010704 |
| Amaranthaceae | Suaeda glauca | 3 | Sgl52318, Sgl57582, Sgl57595 |
| Amaranthaceae | Chenopodium album | 2 | gene:ENSEOMG00000005856, gene:ENSEOMG00000026088 |
| Amaranthaceae | Chenopodium quinoa | 2 | CQ.Regalona.r1.5AG0005130, CQ.Regalona.r1.5BG0005510 |
| Anacardiaceae | Pistacia vera | 1 | pistato.v30133600 |
| Apiaceae | Apium graveolens | 1 | Ag11G04729 |
| Arecaceae | Cocos nucifera | 2 | COCNU_07G006670, COCNU_10G005010 |
| Arecaceae | Phoenix dactylifera | 2 | gene-LOC103707710, gene-LOC103719463 |
| Asparagaceae | Asparagus officinalis | 1 | AsparagusV1_10.1147.V1.1 |
| Asteraceae | Flaveria trinervia | 4 | Ftri13G29526, Ftri14G23588, Ftri16G22527, Ftri7G15065 |
| Brassicaceae | Arabidopsis thaliana | 1 | AT4G10790.1 |
| Brassicaceae | Eutrema salsugineum | 2 | Thhalv10025495m.g.v1.0, Thhalv10028607m.g.v1.0 |
| Brassicaceae | Schrenkiella parvula | 1 | Sp6g06710.v2.2 |
| Brassicaceae | Brassica nigra | 4 | BniB03g050390.2N, BniB05g058270.2N, BniB08g036060.2N ... |
| Casuarinaceae | Casuarina equisetifolia | 1 | Ceq03G0628 |
| Casuarinaceae | Casuarina glauca | 1 | Cgl03G0721 |
| Cymodoceaceae | Cymodocea nodosa | 1 | gene.Cymno11g08970 |
| Dunaliellaceae | Dunaliella salina | 1 | Dusal.0069s00023.v1.0 |
| Hydrocharitaceae | Thalassia testudinum | 1 | gene.Thate05g01850 |
| Nitrariaceae | Nitraria sibirica | 1 | evm.TU.LG10.1591 |
| Plantaginaceae | Plantago ovata | 1 | Pov_00005208 |
| Plumbaginaceae | Limonium bicolor | 2 | Lb3G19605, Lb4G22381 |
| Poaceae | Echinochloa crus-galli | 3 | AH01.3158, BH01.3519, CH01.3725 |
| Poaceae | Eleusine coracana subsp. coracana | 2 | gene-QOZ80_2AG0114070, gene-QOZ80_2BG0167830 |
| Poaceae | Hordeum vulgare | 1 | HORVU.MOREX.r3.1HG0050850.1 |
| Poaceae | Lolium multiflorum | 1 | gene-QYE76_012164 |
| Poaceae | Oryza coarctata | 2 | Oco19G008250, Oco20G008090 |
| Poaceae | Oryza sativa | 1 | LOC_Os10g37630.1 |
| Poaceae | Paspalum vaginatum | 1 | gene-BS78_01G310500 |
| Poaceae | Puccinellia tenuiflora | 1 | Pt_Chr0502994 |
| Poaceae | Sporobolus alterniflorus | 4 | Chr06G029290, Chr09G002940, Chr13G021870, Chr15G020520 |
| Poaceae | Thinopyrum elongatum | 1 | Tel1E01G323700 |
| Poaceae | Triticum dicoccoides | 2 | gene_TRIDC1AG027730, gene_TRIDC1BG033170 |
| Poaceae | Triticum aestivum | 3 | TraesCS1A02G182700.1, TraesCS1B02G198000.1 ... |
| Poaceae | Zea mays | 3 | Zm00001eb021210_P001, Zm00001eb044430_P001 ... |
| Poaceae | Zoysia japonica | 2 | nbis-gene-34422, nbis-gene-36115 |
| Poaceae | Zoysia macrostachya | 2 | Zma_g12778, Zma_g15534 |
| Portulacaceae | Portulaca oleracea | 2 | evm.TU.LG02.2621, evm.TU.LG23.848 |
| Posidoniaceae | Posidonia oceanica | 3 | gene.Posoc06g00550, gene.Posoc06g11300, gene.Posoc08g01600 |
| Rhizophoraceae | Bruguiera sexangula | 1 | evm.TU.Scaffold_14_RagTag.50 |
| Rhizophoraceae | Carallia pectinifolia | 3 | nbisL1-mrna-18358, nbisL1-mrna-22217, nbisL1-mrna-22289 |
| Rhizophoraceae | Ceriops tagal | 1 | nbisL1-mrna-7371 |
| Rhizophoraceae | Ceriops zippeliana | 1 | nbisL1-mrna-8667 |
| Rhizophoraceae | Kandelia candel | 2 | add.evm.TU.utg000022l.259, evm.TU.utg000007l.367 |
| Rhizophoraceae | Kandelia obovata | 1 | Maker00018685 |
| Rhizophoraceae | Rhizophora apiculata | 2 | nbisL1-mrna-15936, nbisL1-mrna-3613 |
| Rhizophoraceae | Rhizophora mangle | 2 | nbisL1-mrna-11040, nbisL1-mrna-6805 |
| Salicaceae | Populus euphratica | 2 | populus_peu03745, populus_peu34587 |
| Solanaceae | Lycium barbarum | 2 | gene-LOC132609954, gene-LOC132634727 |
| Solanaceae | Solanum chilense | 2 | SOLCI002710300, SOLCI004212700 |
| Solanaceae | Solanum pennellii | 2 | gene-LOC107029087, gene-LOC107029089 |
| Tamaricaceae | Reaumuria soongarica | 2 | STRG.10793_chr07_-, STRG.13818_chr05_- |
| Tamaricaceae | Tamarix chinensis | 1 | TC01G3142 |
| Zosteraceae | Zostera marina | 1 | Zosma01g02690.v3.1 |