Basic Information
Locus ID:
Ag11G04718
Species & Taxonomic ID:
Apium graveolens & 4045
Genome Assembly:
GCA_009905375.1
Description:
F-box protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr11 | 195945537 | 195950236 | - | Ag11G04718 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.96 | 25,834.77 Da | 34.44 | 71.05 | -0.32 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00646 | F-box domain | 34 | 74 | 5.8E-5 | IPR001810 |
| Pfam | PF13474 | SnoaL-like domain | 103 | 216 | 3.5E-23 | IPR037401 |
| SUPERFAMILY | SSF54427 | NTF2-like | 98 | 215 | 2.7E-23 | IPR032710 |
| SUPERFAMILY | SSF81383 | F-box domain | 29 | 109 | 5.72E-15 | IPR036047 |
| Gene3D | G3DSA:1.20.1280.50 | - | 30 | 92 | 4.8E-7 | - |
| Gene3D | G3DSA:3.10.450.50 | - | 97 | 222 | 1.2E-30 | - |
| ProSiteProfiles | PS50181 | F-box domain profile. | 29 | 75 | 8.888098 | IPR001810 |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT4G10925.1 | Nuclear transport factor 2 (NTF2) family protein. | 0 |
| RefSeq | XP_017232016.1 | PREDICTED: F-box protein SKIP8 [Daucus carota subsp. sativus] | 0 |
| Q93YV9 | F-box protein SKIP8 OS=Arabidopsis thaliana OX=3702 GN=SKIP8 PE=1 SV=1 | 0 | |
| TrEMBL | A0A161Y874 | F-box domain-containing protein OS=Daucus carota subsp. sativus OX=79200 GN=DCAR_006524 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| PRJNA723697 | SRX10692252 | 22.039059 | Shengqin NO.2 | seed | S1-1 | S1-1 | initial formation stage (S1) |
| PRJNA723697 | SRX10692254 | 18.48419 | Shengqin NO.2 | seed | S1-3 | S1-3 | initial formation stage (S1) |
| PRJNA723697 | SRX10692255 | 13.758367 | Shengqin NO.2 | seed | S3-1 | S3-1 | middle development stage (S3) |
| PRJNA723697 | SRX10692256 | 15.118686 | Shengqin NO.2 | seed | S3-2 | S3-2 | middle development stage (S3) |
| PRJNA723697 | SRX10692257 | 15.111216 | Shengqin NO.2 | seed | S3-3 | S3-3 | middle development stage (S3) |
| PRJNA723697 | SRX10692258 | 15.611797 | Shengqin NO.2 | seed | S5-1 | S5-1 | maturation stage (S5) |
| PRJNA723697 | SRX10692259 | 13.544987 | Shengqin NO.2 | seed | S5-2 | S5-2 | maturation stage (S5) |
| PRJNA723697 | SRX10692260 | 10.747997 | Shengqin NO.2 | seed | S5-3 | S5-3 | maturation stage (S5) |
| PRJNA884666 | SRX17729272 | 22.701172 | celery | anther | W99A-r1 | male sterile line | |
| PRJNA884666 | SRX17729273 | 20.218267 | celery | anther | W99A-r2 | male sterile line | |
| PRJNA884666 | SRX17729274 | 24.351982 | celery | anther | W99A-r3 | male sterile line | |
| PRJNA884666 | SRX17729275 | 29.955627 | celery | anther | W99B-r1 | maintainer line | |
| PRJNA884666 | SRX17729276 | 22.152254 | celery | anther | W99B-r2 | maintainer line | |
| PRJNA884666 | SRX17729277 | 20.316311 | celery | anther | W99B-r3 | maintainer line | |
| PRJNA884180 | SRX17743889 | 11.622341 | var. secalinum Yablochny | collenchyma | Col_S1_rep1-1 | ||
| PRJNA884180 | SRX17748056 | 11.105817 | var. secalinum Yablochny | collenchyma | Col_S1_rep3 | biological replicate 3 | |
| PRJNA884180 | SRX17748057 | 9.629319 | var. secalinum Yablochny | collenchyma | Col_S1_rep4 | biological replicate 4 | |
| PRJNA884180 | SRX17748678 | 9.329296 | var. secalinum Yablochny | parenchyma | Par_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17748679 | 9.278567 | var. secalinum Yablochny | parenchyma | Par_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17748680 | 10.293506 | var. secalinum Yablochny | parenchyma | Par_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17748681 | 13.319248 | var. secalinum Yablochny | parenchyma | Par_S1_rep4 | Biological replicate 4 | |
| PRJNA884180 | SRX17748898 | 12.444228 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17748899 | 10.702603 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17748900 | 12.066417 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17748901 | 13.168968 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep4 | Biological replicate 4 | |
| PRJNA884180 | SRX17749129 | 8.844173 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17749130 | 9.957244 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17749131 | 7.124583 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17749132 | 10.431814 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep4 | Biological replicate 4 | |
| PRJNA1124269 | SRX24936411 | 15.672259 | leaf | CK1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936412 | 15.970509 | leaf | CK2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936413 | 16.15399 | leaf | CK3 | replicate=biological replicate3 | ||
| PRJNA1124269 | SRX24936414 | 13.270591 | leaf | D1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936415 | 17.540749 | leaf | D2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936416 | 12.164069 | leaf | D3 | replicate=biological replicate3 | ||
| PRJNA1124269 | SRX24936417 | 17.450411 | leaf | MD1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936418 | 10.07798 | leaf | MD2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936419 | 17.786812 | leaf | MD3 | replicate=biological replicate3 | ||
| PRJNA387092 | SRX2833309 | 5.859515 | shanghaihuangxin | leaf | leaves between 0.5 and 1 cm in breadth, folded; | stage 2 | |
| PRJNA387092 | SRX2833321 | 4.23768 | shanghaihuangxin | leaf | leaves between 2and 2.5 cm in breadth, nearly unfolded, with clear stem exten-sion | stage 5 | |
| PRJNA387092 | SRX2833323 | 4.088277 | shanghaihuangxin | leaf | leaves >3 cm, unfolded, with clearstem extension | stage 7 | |
| PRJNA543957 | SRX5879598 | 36.460899 | Zhangzhou lvqing | stem | Se3 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879599 | 20.165232 | Zhangzhou lvqing | stem | Se2 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879600 | 12.008598 | Zhangzhou lvqing | stem | Mock2 | mock | |
| PRJNA543957 | SRX5879601 | 15.381191 | Zhangzhou lvqing | stem | Mock1 | mock | |
| PRJNA543957 | SRX5879602 | 33.992725 | Zhangzhou lvqing | stem | Se1 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879603 | 16.376396 | Zhangzhou lvqing | stem | Mock3 | mock | |
| PRJNA609149 | SRX7815917 | 17.541769 | Jinnan Shiqin | flower bud | early flower bud | early flower bud | |
| PRJNA609149 | SRX7815918 | 13.775991 | Jinnan Shiqin | flower bud | middle flower bud | middle flower bud | |
| PRJNA609149 | SRX7815919 | 15.200263 | Jinnan Shiqin | flower bud | early flowering period | early flowering period |
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Acanthaceae | Avicennia marina | 3 | jg37010, jg4715, jg7703 |
| Aizoaceae | Mesembryanthemum crystallinum | 1 | gene_15161 |
| Amaranthaceae | Atriplex hortensis | 1 | Ah003907 |
| Amaranthaceae | Beta vulgaris | 1 | BVRB_5g098580 |
| Amaranthaceae | Salicornia bigelovii | 2 | Sbi_jg24064, Sbi_jg7908 |
| Amaranthaceae | Salicornia europaea | 1 | Seu_jg12134 |
| Amaranthaceae | Suaeda aralocaspica | 1 | GOSA_00010670 |
| Amaranthaceae | Suaeda glauca | 3 | Sgl05315, Sgl52254, Sgl57507 |
| Amaranthaceae | Chenopodium album | 3 | gene:ENSEOMG00000004973, gene:ENSEOMG00000021713 ... |
| Amaranthaceae | Chenopodium quinoa | 2 | CQ.Regalona.r1.5AG0005630, CQ.Regalona.r1.5BG0005910 |
| Anacardiaceae | Pistacia vera | 1 | pistato.v30134170 |
| Apiaceae | Apium graveolens | 1 | Ag11G04718 |
| Arecaceae | Cocos nucifera | 2 | COCNU_06G002380, COCNU_14G001260 |
| Arecaceae | Phoenix dactylifera | 2 | gene-LOC103712933, gene-LOC103719178 |
| Asparagaceae | Asparagus officinalis | 1 | AsparagusV1_05.2000.V1.1 |
| Asteraceae | Flaveria trinervia | 1 | Ftri13G12390 |
| Brassicaceae | Arabidopsis thaliana | 2 | AT4G10925.1, AT4G23960.1 |
| Brassicaceae | Eutrema salsugineum | 1 | Thhalv10028928m.g.v1.0 |
| Brassicaceae | Schrenkiella parvula | 1 | Sp6g06570.v2.2 |
| Brassicaceae | Brassica nigra | 1 | BniB08g051440.2N |
| Casuarinaceae | Casuarina equisetifolia | 1 | Ceq03G0543 |
| Casuarinaceae | Casuarina glauca | 1 | Cgl03G0652 |
| Cymodoceaceae | Cymodocea nodosa | 1 | gene.Cymno12g03360 |
| Hydrocharitaceae | Thalassia testudinum | 1 | gene.Thate09g08020 |
| Nitrariaceae | Nitraria sibirica | 1 | evm.TU.LG10.1557 |
| Plantaginaceae | Plantago ovata | 1 | Pov_00005400 |
| Plumbaginaceae | Limonium bicolor | 2 | Lb4G24677, Lb4G24686 |
| Poaceae | Echinochloa crus-galli | 3 | AH02.2010, BH02.2057, CH02.2231 |
| Poaceae | Eleusine coracana subsp. coracana | 2 | gene-QOZ80_1AG0020700, gene-QOZ80_1BG0070550 |
| Poaceae | Hordeum vulgare | 1 | HORVU.MOREX.r3.3HG0264930.2 |
| Poaceae | Lolium multiflorum | 1 | gene-QYE76_053312 |
| Poaceae | Oryza coarctata | 2 | Oco01G012390, Oco02G012540 |
| Poaceae | Oryza sativa | 1 | LOC_Os01g36940.1 |
| Poaceae | Paspalum vaginatum | 1 | gene-BS78_03G162400 |
| Poaceae | Puccinellia tenuiflora | 1 | Pt_Chr0603031 |
| Poaceae | Sporobolus alterniflorus | 4 | Chr02G017850, Chr03G008800, Chr05G016170, Chr08G009750 |
| Poaceae | Thinopyrum elongatum | 1 | Tel3E01G352900 |
| Poaceae | Triticum dicoccoides | 2 | gene_TRIDC3AG029190, gene_TRIDC3BG032700 |
| Poaceae | Triticum aestivum | 3 | TraesCS3A02G199900.1, TraesCS3B02G224900.1 ... |
| Poaceae | Zea mays | 2 | Zm00001eb162420_P001, Zm00001eb356530_P001 |
| Poaceae | Zoysia japonica | 2 | nbis-gene-21441, nbis-gene-47359 |
| Poaceae | Zoysia macrostachya | 2 | Zma_g10463, Zma_g8045 |
| Portulacaceae | Portulaca oleracea | 2 | evm.TU.LG10.127, evm.TU.LG17.126 |
| Posidoniaceae | Posidonia oceanica | 1 | gene.Posoc09g05010 |
| Rhizophoraceae | Bruguiera sexangula | 1 | evm.TU.Scaffold_16_RagTag.66 |
| Rhizophoraceae | Carallia pectinifolia | 1 | nbisL1-mrna-22313 |
| Rhizophoraceae | Ceriops tagal | 1 | nbisL1-mrna-4355 |
| Rhizophoraceae | Ceriops zippeliana | 1 | nbisL1-mrna-20417 |
| Rhizophoraceae | Kandelia candel | 1 | evm.TU.utg000022l.458 |
| Rhizophoraceae | Kandelia obovata | 1 | Maker00014246 |
| Rhizophoraceae | Rhizophora apiculata | 1 | nbisL1-mrna-3597 |
| Rhizophoraceae | Rhizophora mangle | 1 | nbisL1-mrna-6780 |
| Salicaceae | Populus euphratica | 2 | populus_peu03706, populus_peu34553 |
| Solanaceae | Lycium barbarum | 1 | gene-LOC132634750 |
| Solanaceae | Solanum pennellii | 1 | gene-LOC107028853 |
| Tamaricaceae | Reaumuria soongarica | 1 | gene_13852 |
| Tamaricaceae | Tamarix chinensis | 2 | TC01G3096, TC06G0111 |
| Zosteraceae | Zostera marina | 1 | Zosma05g11990.v3.1 |