Basic Information
Locus ID:
Ag11G04663
Species & Taxonomic ID:
Apium graveolens & 4045
Genome Assembly:
GCA_009905375.1
Description:
RING/Ubox like zinc-binding domain
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr11 | 193205746 | 193207923 | + | Ag11G04663 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.62 | 43,654.90 Da | 55.17 | 48.40 | -0.90 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G45630.1 | RNA binding (RRM/RBD/RNP motifs) family protein. | 0 |
| RefSeq | XP_017236077.1 | PREDICTED: uncharacterized protein LOC108209600 [Daucus carota subsp. sativus] | 0 |
| TrEMBL | A0A166DT04 | CCR4-NOT transcription complex subunit 4 OS=Daucus carota subsp. sativus OX=79200 GN=DCAR_006476 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| PRJNA723697 | SRX10692252 | 40.383919 | Shengqin NO.2 | seed | S1-1 | S1-1 | initial formation stage (S1) |
| PRJNA723697 | SRX10692254 | 22.790874 | Shengqin NO.2 | seed | S1-3 | S1-3 | initial formation stage (S1) |
| PRJNA723697 | SRX10692255 | 19.683893 | Shengqin NO.2 | seed | S3-1 | S3-1 | middle development stage (S3) |
| PRJNA723697 | SRX10692256 | 21.177942 | Shengqin NO.2 | seed | S3-2 | S3-2 | middle development stage (S3) |
| PRJNA723697 | SRX10692257 | 19.730749 | Shengqin NO.2 | seed | S3-3 | S3-3 | middle development stage (S3) |
| PRJNA723697 | SRX10692258 | 12.809024 | Shengqin NO.2 | seed | S5-1 | S5-1 | maturation stage (S5) |
| PRJNA723697 | SRX10692259 | 14.496552 | Shengqin NO.2 | seed | S5-2 | S5-2 | maturation stage (S5) |
| PRJNA723697 | SRX10692260 | 8.071254 | Shengqin NO.2 | seed | S5-3 | S5-3 | maturation stage (S5) |
| PRJNA884666 | SRX17729272 | 75.133217 | celery | anther | W99A-r1 | male sterile line | |
| PRJNA884666 | SRX17729273 | 74.312805 | celery | anther | W99A-r2 | male sterile line | |
| PRJNA884666 | SRX17729274 | 86.760529 | celery | anther | W99A-r3 | male sterile line | |
| PRJNA884666 | SRX17729275 | 72.005531 | celery | anther | W99B-r1 | maintainer line | |
| PRJNA884666 | SRX17729276 | 64.538345 | celery | anther | W99B-r2 | maintainer line | |
| PRJNA884666 | SRX17729277 | 55.65934 | celery | anther | W99B-r3 | maintainer line | |
| PRJNA884180 | SRX17743889 | 34.092514 | var. secalinum Yablochny | collenchyma | Col_S1_rep1-1 | ||
| PRJNA884180 | SRX17748056 | 31.417984 | var. secalinum Yablochny | collenchyma | Col_S1_rep3 | biological replicate 3 | |
| PRJNA884180 | SRX17748057 | 45.98151 | var. secalinum Yablochny | collenchyma | Col_S1_rep4 | biological replicate 4 | |
| PRJNA884180 | SRX17748678 | 20.976595 | var. secalinum Yablochny | parenchyma | Par_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17748679 | 26.867018 | var. secalinum Yablochny | parenchyma | Par_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17748680 | 16.487246 | var. secalinum Yablochny | parenchyma | Par_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17748681 | 25.713314 | var. secalinum Yablochny | parenchyma | Par_S1_rep4 | Biological replicate 4 | |
| PRJNA884180 | SRX17748898 | 45.519707 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17748899 | 39.235546 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17748900 | 40.447269 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17748901 | 36.10334 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep4 | Biological replicate 4 | |
| PRJNA884180 | SRX17749129 | 33.437553 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17749130 | 29.782581 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17749131 | 21.039358 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17749132 | 36.775162 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep4 | Biological replicate 4 | |
| PRJNA1124269 | SRX24936411 | 14.813384 | leaf | CK1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936412 | 23.912796 | leaf | CK2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936413 | 19.134926 | leaf | CK3 | replicate=biological replicate3 | ||
| PRJNA1124269 | SRX24936414 | 12.041576 | leaf | D1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936415 | 34.587395 | leaf | D2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936416 | 18.115957 | leaf | D3 | replicate=biological replicate3 | ||
| PRJNA1124269 | SRX24936417 | 13.841596 | leaf | MD1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936418 | 8.541628 | leaf | MD2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936419 | 8.64525 | leaf | MD3 | replicate=biological replicate3 | ||
| PRJNA387092 | SRX2833309 | 61.355907 | shanghaihuangxin | leaf | leaves between 0.5 and 1 cm in breadth, folded; | stage 2 | |
| PRJNA387092 | SRX2833321 | 29.942503 | shanghaihuangxin | leaf | leaves between 2and 2.5 cm in breadth, nearly unfolded, with clear stem exten-sion | stage 5 | |
| PRJNA387092 | SRX2833323 | 18.662809 | shanghaihuangxin | leaf | leaves >3 cm, unfolded, with clearstem extension | stage 7 | |
| PRJNA543957 | SRX5879598 | 7.422809 | Zhangzhou lvqing | stem | Se3 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879599 | 11.375939 | Zhangzhou lvqing | stem | Se2 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879600 | 13.811069 | Zhangzhou lvqing | stem | Mock2 | mock | |
| PRJNA543957 | SRX5879601 | 14.020084 | Zhangzhou lvqing | stem | Mock1 | mock | |
| PRJNA543957 | SRX5879602 | 10.210779 | Zhangzhou lvqing | stem | Se1 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879603 | 12.512911 | Zhangzhou lvqing | stem | Mock3 | mock | |
| PRJNA609149 | SRX7815917 | 70.46125 | Jinnan Shiqin | flower bud | early flower bud | early flower bud | |
| PRJNA609149 | SRX7815918 | 62.19339 | Jinnan Shiqin | flower bud | middle flower bud | middle flower bud | |
| PRJNA609149 | SRX7815919 | 56.023834 | Jinnan Shiqin | flower bud | early flowering period | early flowering period |
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Acanthaceae | Avicennia marina | 3 | jg16628, jg37936, jg37937 |
| Aizoaceae | Mesembryanthemum crystallinum | 1 | gene_25753 |
| Amaranthaceae | Atriplex hortensis | 2 | Ah037635, Ah037637 |
| Amaranthaceae | Beta vulgaris | 1 | BVRB_9g207330 |
| Amaranthaceae | Salicornia bigelovii | 2 | Sbi_jg2425, Sbi_jg59867 |
| Amaranthaceae | Salicornia europaea | 1 | Seu_jg24119 |
| Amaranthaceae | Suaeda aralocaspica | 1 | GOSA_00025989 |
| Amaranthaceae | Suaeda glauca | 2 | Sgl78745, Sgl81214 |
| Amaranthaceae | Chenopodium album | 7 | gene:ENSEOMG00000016030, gene:ENSEOMG00000017359 ... |
| Amaranthaceae | Chenopodium quinoa | 3 | CQ.Regalona.r1.9AG0005470, CQ.Regalona.r1.9BG0016740 ... |
| Anacardiaceae | Pistacia vera | 2 | pistato.v30059360, pistato.v30271870 |
| Apiaceae | Apium graveolens | 6 | Ag10G00540, Ag11G04662, Ag11G04663, Ag2G00670, Ag2G00923 ... |
| Arecaceae | Cocos nucifera | 3 | COCNU_03G013580, COCNU_04G002800, COCNU_12G007040 |
| Arecaceae | Phoenix dactylifera | 4 | gene-LOC103702851, gene-LOC103715965, gene-LOC103716197 ... |
| Asparagaceae | Asparagus officinalis | 3 | AsparagusV1_05.445.V1.1, AsparagusV1_06.1382.V1.1 ... |
| Asteraceae | Flaveria trinervia | 4 | Ftri10G26587, Ftri12G16297, Ftri17G20184, Ftri9G23169 |
| Brassicaceae | Arabidopsis thaliana | 3 | AT2G28540.2, AT3G45630.1, AT5G60170.2 |
| Brassicaceae | Eutrema salsugineum | 3 | Thhalv10012563m.g.v1.0, Thhalv10012567m.g.v1.0 ... |
| Brassicaceae | Schrenkiella parvula | 4 | Sp4g11360.v2.2, Sp4g11370.v2.2, Sp5g15830.v2.2 ... |
| Brassicaceae | Brassica nigra | 7 | BniB01g015360.2N, BniB01g015370.2N, BniB02g039900.2N ... |
| Casuarinaceae | Casuarina equisetifolia | 1 | Ceq08G2392 |
| Casuarinaceae | Casuarina glauca | 1 | Cgl08G2596 |
| Cymodoceaceae | Cymodocea nodosa | 3 | gene.Cymno18g00440, gene.Cymno18g00470, gene.Cymno18g00480 |
| Hydrocharitaceae | Thalassia testudinum | 2 | gene.Thate08g12630, gene.Thate08g12670 |
| Malvaceae | Hibiscus hamabo Siebold & Zucc. | 1 | nbisL1-mrna-580 |
| Nitrariaceae | Nitraria sibirica | 2 | evm.TU.LG01.1374, evm.TU.LG09.982 |
| Plantaginaceae | Plantago ovata | 2 | Pov_00012739, Pov_00016047 |
| Plumbaginaceae | Limonium bicolor | 3 | Lb0G36780, Lb1G02544, Lb6G30938 |
| Poaceae | Echinochloa crus-galli | 3 | AH08.2136, BH08.2250, CH08.2425 |
| Poaceae | Eleusine coracana subsp. coracana | 2 | gene-QOZ80_5AG0406040, gene-QOZ80_5BG0454130 |
| Poaceae | Hordeum vulgare | 1 | HORVU.MOREX.r3.5HG0466830.1 |
| Poaceae | Oryza coarctata | 6 | Ocoptg000041lG000150, Ocoptg000061lG000100 ... |
| Poaceae | Oryza sativa | 1 | LOC_Os12g01190.2 |
| Poaceae | Paspalum vaginatum | 1 | gene-BS78_05G001600 |
| Poaceae | Puccinellia tenuiflora | 1 | Pt_Chr0705182 |
| Poaceae | Sporobolus alterniflorus | 5 | Chr07G022540, Chr17G014360, Chr19G011160, Chr27G004940 ... |
| Poaceae | Thinopyrum elongatum | 1 | Tel5E01G270200 |
| Poaceae | Triticum dicoccoides | 2 | gene_TRIDC5AG025990, gene_TRIDC5BG027140 |
| Poaceae | Triticum aestivum | 3 | TraesCS5A02G156500.2, TraesCS5B02G154700.3 ... |
| Poaceae | Zea mays | 4 | Zm00001eb094340_P001, Zm00001eb163140_P001 ... |
| Poaceae | Zoysia japonica | 2 | nbis-gene-38390, nbis-gene-40104 |
| Poaceae | Zoysia macrostachya | 1 | Zma_g17517 |
| Portulacaceae | Portulaca oleracea | 4 | evm.TU.LG02.2094, evm.TU.LG06.1000, evm.TU.LG11.260 ... |
| Posidoniaceae | Posidonia oceanica | 1 | gene.Posoc07g14430 |
| Rhizophoraceae | Bruguiera sexangula | 3 | evm.TU.Scaffold_12_RagTag.319, evm.TU.Scaffold_12_RagTag.320 ... |
| Rhizophoraceae | Carallia pectinifolia | 3 | nbisL1-mrna-24477, nbisL1-mrna-30274, nbisL1-mrna-30286 |
| Rhizophoraceae | Ceriops tagal | 2 | nbisL1-mrna-12662, nbisL1-mrna-19718 |
| Rhizophoraceae | Ceriops zippeliana | 3 | nbisL1-mrna-16138, nbisL1-mrna-16139, nbisL1-mrna-19596 |
| Rhizophoraceae | Kandelia candel | 2 | evm.TU.utg000015l.448, evm.TU.utg000027l.379 |
| Rhizophoraceae | Kandelia obovata | 2 | Maker00015216, Maker00017869 |
| Rhizophoraceae | Rhizophora apiculata | 2 | nbisL1-mrna-4367, nbisL1-mrna-5604 |
| Rhizophoraceae | Rhizophora mangle | 2 | nbisL1-mrna-11820, nbisL1-mrna-15040 |
| Salicaceae | Populus euphratica | 6 | populus_peu02677, populus_peu09199, populus_peu11743 ... |
| Solanaceae | Lycium barbarum | 4 | gene-LOC132600816, gene-LOC132605924, gene-LOC132613799 ... |
| Solanaceae | Solanum chilense | 4 | SOLCI001120100, SOLCI003343700, SOLCI003402900 ... |
| Solanaceae | Solanum pennellii | 4 | gene-LOC107004502, gene-LOC107017872, gene-LOC107018096 ... |
| Tamaricaceae | Reaumuria soongarica | 2 | gene_13756, gene_2168 |
| Tamaricaceae | Tamarix chinensis | 2 | TC01G2712, TC03G0051 |
| Zosteraceae | Zostera marina | 2 | Zosma06g27440.v3.1, Zosma06g27460.v3.1 |