Basic Information
Locus ID:
Ag11G04660
Species & Taxonomic ID:
Apium graveolens & 4045
Genome Assembly:
GCA_009905375.1
Description:
Uncharacterised ACR, YagE family COG1723
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr11 | 193114893 | 193118917 | - | Ag11G04660 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.51 | 43,503.53 Da | 41.17 | 97.67 | -0.02 |
Protein Domain:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G13610.1 | Protein of unknown function (DUF155). | 0 |
| RefSeq | XP_017232153.1 | PREDICTED: uncharacterized protein LOC108206386 [Daucus carota subsp. sativus] | 0 |
| Q9FNB2 | Protein RETARDED ROOT GROWTH-LIKE OS=Arabidopsis thaliana OX=3702 GN=RRL PE=2 SV=1 | 0 | |
| TrEMBL | A0A166DSZ9 | DUF155 domain-containing protein OS=Daucus carota subsp. sativus OX=79200 GN=DCAR_006475 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| PRJNA723697 | SRX10692252 | 11.796728 | Shengqin NO.2 | seed | S1-1 | S1-1 | initial formation stage (S1) |
| PRJNA723697 | SRX10692254 | 9.258923 | Shengqin NO.2 | seed | S1-3 | S1-3 | initial formation stage (S1) |
| PRJNA723697 | SRX10692255 | 10.839132 | Shengqin NO.2 | seed | S3-1 | S3-1 | middle development stage (S3) |
| PRJNA723697 | SRX10692256 | 11.603082 | Shengqin NO.2 | seed | S3-2 | S3-2 | middle development stage (S3) |
| PRJNA723697 | SRX10692257 | 12.184682 | Shengqin NO.2 | seed | S3-3 | S3-3 | middle development stage (S3) |
| PRJNA723697 | SRX10692258 | 14.619295 | Shengqin NO.2 | seed | S5-1 | S5-1 | maturation stage (S5) |
| PRJNA723697 | SRX10692259 | 11.221137 | Shengqin NO.2 | seed | S5-2 | S5-2 | maturation stage (S5) |
| PRJNA723697 | SRX10692260 | 7.490362 | Shengqin NO.2 | seed | S5-3 | S5-3 | maturation stage (S5) |
| PRJNA884666 | SRX17729272 | 14.673768 | celery | anther | W99A-r1 | male sterile line | |
| PRJNA884666 | SRX17729273 | 14.481842 | celery | anther | W99A-r2 | male sterile line | |
| PRJNA884666 | SRX17729274 | 17.430958 | celery | anther | W99A-r3 | male sterile line | |
| PRJNA884666 | SRX17729275 | 18.718576 | celery | anther | W99B-r1 | maintainer line | |
| PRJNA884666 | SRX17729276 | 17.623596 | celery | anther | W99B-r2 | maintainer line | |
| PRJNA884666 | SRX17729277 | 13.388605 | celery | anther | W99B-r3 | maintainer line | |
| PRJNA884180 | SRX17743889 | 5.089304 | var. secalinum Yablochny | collenchyma | Col_S1_rep1-1 | ||
| PRJNA884180 | SRX17748056 | 5.183534 | var. secalinum Yablochny | collenchyma | Col_S1_rep3 | biological replicate 3 | |
| PRJNA884180 | SRX17748057 | 7.031745 | var. secalinum Yablochny | collenchyma | Col_S1_rep4 | biological replicate 4 | |
| PRJNA884180 | SRX17748678 | 4.648858 | var. secalinum Yablochny | parenchyma | Par_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17748679 | 3.740546 | var. secalinum Yablochny | parenchyma | Par_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17748680 | 4.65296 | var. secalinum Yablochny | parenchyma | Par_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17748681 | 4.305077 | var. secalinum Yablochny | parenchyma | Par_S1_rep4 | Biological replicate 4 | |
| PRJNA884180 | SRX17748898 | 6.641419 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17748899 | 10.120161 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17748900 | 8.123377 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17748901 | 8.594676 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep4 | Biological replicate 4 | |
| PRJNA884180 | SRX17749129 | 5.456597 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17749130 | 5.712855 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17749131 | 5.693053 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17749132 | 6.887449 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep4 | Biological replicate 4 | |
| PRJNA1124269 | SRX24936411 | 4.034669 | leaf | CK1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936412 | 4.319313 | leaf | CK2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936413 | 4.103114 | leaf | CK3 | replicate=biological replicate3 | ||
| PRJNA1124269 | SRX24936414 | 8.660449 | leaf | D1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936415 | 10.422217 | leaf | D2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936416 | 6.429303 | leaf | D3 | replicate=biological replicate3 | ||
| PRJNA1124269 | SRX24936417 | 5.355562 | leaf | MD1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936418 | 4.348214 | leaf | MD2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936419 | 4.838282 | leaf | MD3 | replicate=biological replicate3 | ||
| PRJNA387092 | SRX2833309 | 13.392009 | shanghaihuangxin | leaf | leaves between 0.5 and 1 cm in breadth, folded; | stage 2 | |
| PRJNA387092 | SRX2833321 | 6.659915 | shanghaihuangxin | leaf | leaves between 2and 2.5 cm in breadth, nearly unfolded, with clear stem exten-sion | stage 5 | |
| PRJNA387092 | SRX2833323 | 2.49892 | shanghaihuangxin | leaf | leaves >3 cm, unfolded, with clearstem extension | stage 7 | |
| PRJNA543957 | SRX5879598 | 7.311228 | Zhangzhou lvqing | stem | Se3 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879599 | 6.165266 | Zhangzhou lvqing | stem | Se2 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879600 | 10.155873 | Zhangzhou lvqing | stem | Mock2 | mock | |
| PRJNA543957 | SRX5879601 | 7.973775 | Zhangzhou lvqing | stem | Mock1 | mock | |
| PRJNA543957 | SRX5879602 | 10.565102 | Zhangzhou lvqing | stem | Se1 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879603 | 10.587614 | Zhangzhou lvqing | stem | Mock3 | mock | |
| PRJNA609149 | SRX7815917 | 19.582708 | Jinnan Shiqin | flower bud | early flower bud | early flower bud | |
| PRJNA609149 | SRX7815918 | 18.998426 | Jinnan Shiqin | flower bud | middle flower bud | middle flower bud | |
| PRJNA609149 | SRX7815919 | 14.263547 | Jinnan Shiqin | flower bud | early flowering period | early flowering period |
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Acanthaceae | Avicennia marina | 2 | jg2730, jg7132 |
| Aizoaceae | Mesembryanthemum crystallinum | 2 | gene_12982, gene_18280 |
| Amaranthaceae | Atriplex hortensis | 2 | Ah013069, Ah033531 |
| Amaranthaceae | Beta vulgaris | 1 | BVRB_6g153100 |
| Amaranthaceae | Salicornia bigelovii | 5 | Sbi_jg20763, Sbi_jg22993, Sbi_jg43000, Sbi_jg45608 ... |
| Amaranthaceae | Salicornia europaea | 2 | Seu_jg11453, Seu_jg16866 |
| Amaranthaceae | Suaeda aralocaspica | 2 | GOSA_00002077, GOSA_00009294 |
| Amaranthaceae | Suaeda glauca | 3 | Sgl35728, Sgl35751, Sgl41045 |
| Amaranthaceae | Chenopodium album | 6 | gene:ENSEOMG00000001071, gene:ENSEOMG00000013252 ... |
| Amaranthaceae | Chenopodium quinoa | 2 | CQ.Regalona.r1.2AG0011630, CQ.Regalona.r1.6BG0000320 |
| Anacardiaceae | Pistacia vera | 2 | pistato.v30171640, pistato.v30227250 |
| Apiaceae | Apium graveolens | 3 | Ag10G01054, Ag11G04660, Ag8G01362 |
| Arecaceae | Cocos nucifera | 3 | COCNU_06G016800, contig69490076G000010 ... |
| Arecaceae | Phoenix dactylifera | 3 | gene-LOC103698205, gene-LOC103698775, gene-LOC103710607 |
| Asparagaceae | Asparagus officinalis | 2 | AsparagusV1_03.2030.V1.1, AsparagusV1_07.373.V1.1 |
| Asteraceae | Flaveria trinervia | 4 | Ftri13G06272, Ftri17G29177, Ftri18G22505, Ftri9G19088 |
| Brassicaceae | Arabidopsis thaliana | 2 | AT1G69380.1, AT5G13610.1 |
| Brassicaceae | Eutrema salsugineum | 2 | Thhalv10013692m.g.v1.0, Thhalv10018736m.g.v1.0 |
| Brassicaceae | Schrenkiella parvula | 2 | Sp5g24430.v2.2, Sp6g30420.v2.2 |
| Brassicaceae | Brassica nigra | 4 | BniB02g048940.2N, BniB03g046750.2N, BniB05g024710.2N ... |
| Casuarinaceae | Casuarina equisetifolia | 3 | Ceq02G0663, Ceq02G0667, Ceq07G1198 |
| Casuarinaceae | Casuarina glauca | 2 | Cgl02G0677, Cgl07G1262 |
| Cymodoceaceae | Cymodocea nodosa | 2 | gene.Cymno04g16070, gene.Cymno05g15840 |
| Dunaliellaceae | Dunaliella salina | 5 | Dusal.0041s00027.v1.0, Dusal.0291s00006.v1.0 ... |
| Hydrocharitaceae | Thalassia testudinum | 2 | gene.Thate01g33160, gene.Thate07g00620 |
| Malvaceae | Hibiscus hamabo Siebold & Zucc. | 1 | nbisL1-mrna-1995 |
| Nitrariaceae | Nitraria sibirica | 2 | evm.TU.LG02.1477, evm.TU.LG03.325 |
| Plantaginaceae | Plantago ovata | 2 | Pov_00027052, Pov_00040380 |
| Plumbaginaceae | Limonium bicolor | 3 | Lb1G02822, Lb6G32611, Lb6G32625 |
| Poaceae | Echinochloa crus-galli | 5 | AH02.3364, AH03.4156, BH02.3606, CH02.3138, CH07.13 |
| Poaceae | Eleusine coracana subsp. coracana | 3 | gene-QOZ80_1AG0034270, gene-QOZ80_1BG0084340 ... |
| Poaceae | Hordeum vulgare | 2 | HORVU.MOREX.r3.2HG0107730.1, HORVU.MOREX.r3.3HG0291130.1 |
| Poaceae | Lolium multiflorum | 2 | gene-QYE76_038500, gene-QYE76_055074 |
| Poaceae | Oryza coarctata | 4 | Oco01G021040, Oco02G021620, Oco13G016730, Oco14G017500 |
| Poaceae | Oryza sativa | 2 | LOC_Os01g55860.1, LOC_Os07g49410.1 |
| Poaceae | Paspalum vaginatum | 3 | gene-BS78_02G397900, gene-BS78_02G401400 ... |
| Poaceae | Puccinellia tenuiflora | 3 | Pt_Chr0305263, Pt_Chr0500406, Pt_Chr0602729 |
| Poaceae | Sporobolus alterniflorus | 5 | Chr03G016910, Chr05G024670, Chr19G000010, Chr24G011550 ... |
| Poaceae | Thinopyrum elongatum | 5 | Tel2E01G178800, Tel2E01G957500, Tel3E01G488500 ... |
| Poaceae | Triticum dicoccoides | 6 | gene_TRIDC2AG009050, gene_TRIDC2AG058940 ... |
| Poaceae | Triticum aestivum | 5 | TraesCS2A02G082000.1, TraesCS2B02G096100.1 ... |
| Poaceae | Zea mays | 2 | Zm00001eb152270_P003, Zm00001eb331610_P001 |
| Poaceae | Zoysia japonica | 3 | nbis-gene-10, nbis-gene-11841, nbis-gene-9 |
| Poaceae | Zoysia macrostachya | 2 | Zma_g7137, Zma_g8720 |
| Portulacaceae | Portulaca oleracea | 4 | evm.TU.LG04.884, evm.TU.LG05.2052, evm.TU.LG13.444 ... |
| Posidoniaceae | Posidonia oceanica | 4 | gene.Posoc01g35880, gene.Posoc03g13250, gene.Posoc06g17400 ... |
| Rhizophoraceae | Bruguiera sexangula | 3 | evm.TU.Scaffold_11_RagTag.474, evm.TU.Scaffold_15_RagTag.582 ... |
| Rhizophoraceae | Carallia pectinifolia | 4 | nbisL1-mrna-13983, nbisL1-mrna-13984, nbisL1-mrna-26083 ... |
| Rhizophoraceae | Ceriops tagal | 2 | nbisL1-mrna-13733, nbisL1-mrna-17860 |
| Rhizophoraceae | Ceriops zippeliana | 2 | nbisL1-mrna-15787, nbisL1-mrna-4470 |
| Rhizophoraceae | Kandelia candel | 3 | add.evm.TU.utg000005l.45, evm.TU.utg000001l.292 ... |
| Rhizophoraceae | Kandelia obovata | 2 | Maker00000751, Maker00002529 |
| Rhizophoraceae | Rhizophora apiculata | 2 | nbisL1-mrna-11372, nbisL1-mrna-2134 |
| Rhizophoraceae | Rhizophora mangle | 2 | nbisL1-mrna-23493, nbisL1-mrna-9517 |
| Salicaceae | Populus euphratica | 4 | populus_peu06330, populus_peu06770, populus_peu20163 ... |
| Solanaceae | Lycium barbarum | 2 | gene-LOC132614417, gene-LOC132642004 |
| Solanaceae | Solanum chilense | 2 | SOLCI003402700, SOLCI005208100 |
| Solanaceae | Solanum pennellii | 2 | gene-LOC107018188, gene-LOC107018693 |
| Tamaricaceae | Reaumuria soongarica | 5 | STRG.28402_chr04_-, gene_2114, gene_2115, gene_2116 ... |
| Tamaricaceae | Tamarix chinensis | 3 | TC02G2249, TC02G3554, TC03G0823 |
| Zosteraceae | Zostera marina | 2 | Zosma01g18730.v3.1, Zosma02g18720.v3.1 |