halophFGD

Basic Information

Locus ID: Ag11G04642

Species & Taxonomic ID: Apium graveolens & 4045

Genome Assembly: GCA_009905375.1

Description: RING-type E3 ubiquitin transferase

Maps and Mapping Data

Chromosome	Start	End	Strand	ID
chr11	190092438	190096812	+	Ag11G04642

Protein Data

Protein Properties:

Theoretical pI	Molecular Weight	Instability Index	Aliphatic Index	GRAVY
5.94	68,423.05 Da	36.50	104.67	-0.13

Protein Domain:

Category	ID	Description	Start	End	Evalue/Score	InterPro ID
CDD	cd16664	RING-Ubox_PUB	251	293	8.94813E-29	-
Pfam	PF00514	Armadillo/beta-catenin-like repeat	457	495	1.6E-6	IPR000225
Pfam	PF00514	Armadillo/beta-catenin-like repeat	376	413	7.3E-11	IPR000225
Pfam	PF04564	U-box domain	247	317	1.8E-21	IPR003613
SUPERFAMILY	SSF57850	RING/U-box	245	322	4.54E-31	-
SUPERFAMILY	SSF48371	ARM repeat	344	618	3.38E-49	IPR016024
Gene3D	G3DSA:1.20.930.20	-	10	122	5.8E-12	IPR036537
Gene3D	G3DSA:3.30.40.10	Zinc/RING finger domain, C3HC4 (zinc finger)	245	320	6.2E-31	IPR013083
Gene3D	G3DSA:1.25.10.10	-	321	622	3.3E-56	IPR011989
SMART	SM00185	arm_5	415	455	0.27	IPR000225
SMART	SM00185	arm_5	456	496	0.051	IPR000225
SMART	SM00185	arm_5	538	578	65.0	IPR000225
SMART	SM00185	arm_5	497	537	25.0	IPR000225
SMART	SM00185	arm_5	374	414	1.3E-5	IPR000225
SMART	SM00504	Ubox_2	250	313	1.4E-35	IPR003613
ProSiteProfiles	PS50176	Armadillo/plakoglobin ARM repeat profile.	508	545	8.5224	IPR000225
ProSiteProfiles	PS51698	U-box domain profile.	246	320	44.707935	IPR003613
ProSiteProfiles	PS50176	Armadillo/plakoglobin ARM repeat profile.	426	468	9.3274	IPR000225
ProSiteProfiles	PS50176	Armadillo/plakoglobin ARM repeat profile.	385	427	14.3324	IPR000225

Gene Ontology

Biological Process:

GO:0007166 (cell surface receptor signaling pathway) GO:0016567 (protein ubiquitination)

Molecular Function:

GO:0004842 (ubiquitin-protein transferase activity) GO:0005515 (protein binding)

KEGG Pathway

KO Term:

K08332 (vacuolar protein 8)

Best hit

Source	Best Hit ID	Description
TAIR	AT3G54850.1	plant U-box 14. Encodes a protein with a typical U-box domain followed by an Armadillo repeat region, a domain organization that is frequently found in plant U-box proteins. Displays ubiquitin ligase activity in vitro.
RefSeq	XP_017236224.1	PREDICTED: U-box domain-containing protein 14 [Daucus carota subsp. sativus]
Swiss-Prot	Q8VZ40	U-box domain-containing protein 14 OS=Arabidopsis thaliana OX=3702 GN=PUB14 PE=1 SV=1
TrEMBL	A0A166DRF4	RING-type E3 ubiquitin transferase OS=Daucus carota subsp. sativus OX=79200 GN=DCAR_006418 PE=4 SV=1

Expression

BioProject	Accession	TPM	Cultivar	Tissue	Development Stage	Sample Name	Description
PRJNA723697	SRX10692252	11.210117	Shengqin NO.2	seed	S1-1	S1-1	initial formation stage (S1)
PRJNA723697	SRX10692254	10.469601	Shengqin NO.2	seed	S1-3	S1-3	initial formation stage (S1)
PRJNA723697	SRX10692255	13.742709	Shengqin NO.2	seed	S3-1	S3-1	middle development stage (S3)
PRJNA723697	SRX10692256	14.3948	Shengqin NO.2	seed	S3-2	S3-2	middle development stage (S3)
PRJNA723697	SRX10692257	12.861753	Shengqin NO.2	seed	S3-3	S3-3	middle development stage (S3)
PRJNA723697	SRX10692258	16.418926	Shengqin NO.2	seed	S5-1	S5-1	maturation stage (S5)
PRJNA723697	SRX10692259	15.992202	Shengqin NO.2	seed	S5-2	S5-2	maturation stage (S5)
PRJNA723697	SRX10692260	15.922241	Shengqin NO.2	seed	S5-3	S5-3	maturation stage (S5)
PRJNA884666	SRX17729272	21.010593	celery	anther		W99A-r1	male sterile lineÂ
PRJNA884666	SRX17729273	19.331362	celery	anther		W99A-r2	male sterile lineÂ
PRJNA884666	SRX17729274	19.309795	celery	anther		W99A-r3	male sterile lineÂ
PRJNA884666	SRX17729275	17.016212	celery	anther		W99B-r1	maintainer line
PRJNA884666	SRX17729276	17.182001	celery	anther		W99B-r2	maintainer line
PRJNA884666	SRX17729277	14.495884	celery	anther		W99B-r3	maintainer line
PRJNA884180	SRX17743889	14.082214	var. secalinum Yablochny	collenchyma		Col_S1_rep1-1
PRJNA884180	SRX17748056	12.587279	var. secalinum Yablochny	collenchyma		Col_S1_rep3	biological replicate 3
PRJNA884180	SRX17748057	12.765155	var. secalinum Yablochny	collenchyma		Col_S1_rep4	biological replicate 4
PRJNA884180	SRX17748678	12.388453	var. secalinum Yablochny	parenchyma		Par_S1_rep1	Biological replicate 1
PRJNA884180	SRX17748679	10.111414	var. secalinum Yablochny	parenchyma		Par_S1_rep2	Biological replicate 2
PRJNA884180	SRX17748680	16.941984	var. secalinum Yablochny	parenchyma		Par_S1_rep3	Biological replicate 3
PRJNA884180	SRX17748681	15.305857	var. secalinum Yablochny	parenchyma		Par_S1_rep4	Biological replicate 4
PRJNA884180	SRX17748898	12.279266	var. secalinum Yablochny	vascular bundle		Vas_S1_rep1	Biological replicate 1
PRJNA884180	SRX17748899	11.705115	var. secalinum Yablochny	vascular bundle		Vas_S1_rep2	Biological replicate 2
PRJNA884180	SRX17748900	12.702968	var. secalinum Yablochny	vascular bundle		Vas_S1_rep3	Biological replicate 3
PRJNA884180	SRX17748901	13.158345	var. secalinum Yablochny	vascular bundle		Vas_S1_rep4	Biological replicate 4
PRJNA884180	SRX17749129	13.996764	var. secalinum Yablochny	part of the celery petiole without collenchyma strands		Collenchyma-free_S1_rep1	Biological replicate 1
PRJNA884180	SRX17749130	14.730722	var. secalinum Yablochny	part of the celery petiole without collenchyma strands		Collenchyma-free_S1_rep2	Biological replicate 2
PRJNA884180	SRX17749131	11.929114	var. secalinum Yablochny	part of the celery petiole without collenchyma strands		Collenchyma-free_S1_rep3	Biological replicate 3
PRJNA884180	SRX17749132	12.786523	var. secalinum Yablochny	part of the celery petiole without collenchyma strands		Collenchyma-free_S1_rep4	Biological replicate 4
PRJNA1124269	SRX24936411	4.612871		leaf		CK1	replicate=biological replicate1
PRJNA1124269	SRX24936412	5.822896		leaf		CK2	replicate=biological replicate2
PRJNA1124269	SRX24936413	6.065368		leaf		CK3	replicate=biological replicate3
PRJNA1124269	SRX24936414	23.18676		leaf		D1	replicate=biological replicate1
PRJNA1124269	SRX24936415	16.86792		leaf		D2	replicate=biological replicate2
PRJNA1124269	SRX24936416	22.952547		leaf		D3	replicate=biological replicate3
PRJNA1124269	SRX24936417	17.445986		leaf		MD1	replicate=biological replicate1
PRJNA1124269	SRX24936418	8.749788		leaf		MD2	replicate=biological replicate2
PRJNA1124269	SRX24936419	12.765546		leaf		MD3	replicate=biological replicate3
PRJNA387092	SRX2833309	11.028254	shanghaihuangxin	leaf	leaves between 0.5 and 1 cm in breadth, folded;	stage 2
PRJNA387092	SRX2833321	11.015333	shanghaihuangxin	leaf	leaves between 2and 2.5 cm in breadth, nearly unfolded, with clear stem exten-sion	stage 5
PRJNA387092	SRX2833323	7.812473	shanghaihuangxin	leaf	leaves >3 cm, unfolded, with clearstem extension	stage 7
PRJNA543957	SRX5879598	16.983471	Zhangzhou lvqing	stem		Se3	100 ppm Na2SeO4
PRJNA543957	SRX5879599	21.450956	Zhangzhou lvqing	stem		Se2	100 ppm Na2SeO4
PRJNA543957	SRX5879600	20.878994	Zhangzhou lvqing	stem		Mock2	mock
PRJNA543957	SRX5879601	21.595963	Zhangzhou lvqing	stem		Mock1	mock
PRJNA543957	SRX5879602	16.967829	Zhangzhou lvqing	stem		Se1	100 ppm Na2SeO4
PRJNA543957	SRX5879603	21.714012	Zhangzhou lvqing	stem		Mock3	mock
PRJNA609149	SRX7815917	12.917676	Jinnan Shiqin	flower bud	early flower bud	early flower bud
PRJNA609149	SRX7815918	12.884562	Jinnan Shiqin	flower bud	middle flower bud	middle flower bud
PRJNA609149	SRX7815919	15.158915	Jinnan Shiqin	flower bud	early flowering period	early flowering period

Network

🔍 Co-expression Network

🔍 Protein-Protein Interaction Network

Orthology

Family	Species	Count	Orthologous Genes
Acanthaceae	Avicennia marina	3	jg16608, jg37967, jg9770
Aizoaceae	Mesembryanthemum crystallinum	2	gene_4197, gene_7013
Amaranthaceae	Atriplex hortensis	2	Ah020571, Ah028053
Amaranthaceae	Beta vulgaris	1	BVRB_7g174060
Amaranthaceae	Salicornia bigelovii	4	Sbi_jg1783, Sbi_jg34742, Sbi_jg51629, Sbi_jg5432
Amaranthaceae	Salicornia europaea	2	Seu_jg13308, Seu_jg2980
Amaranthaceae	Suaeda aralocaspica	2	GOSA_00003175, GOSA_00016978
Amaranthaceae	Suaeda glauca	5	Sgl04036, Sgl05763, Sgl09104, Sgl73002, Sgl76542
Amaranthaceae	Chenopodium album	8	gene:ENSEOMG00000006572, gene:ENSEOMG00000013921 ... gene:ENSEOMG00000029448, gene:ENSEOMG00000037436, gene:ENSEOMG00000038134, gene:ENSEOMG00000044999, gene:ENSEOMG00000046763, gene:ENSEOMG00000047731
Amaranthaceae	Chenopodium quinoa	4	CQ.Regalona.r1.3AG0015700, CQ.Regalona.r1.3BG0016420 ... CQ.Regalona.r1.7AG0002630, CQ.Regalona.r1.9BG0003030
Anacardiaceae	Pistacia vera	3	pistato.v30060070, pistato.v30170740, pistato.v30174400
Apiaceae	Apium graveolens	4	Ag11G04218, Ag11G04642, Ag2G00878, Ag6G02529
Arecaceae	Cocos nucifera	4	COCNU_04G001930, COCNU_04G015200, COCNU_08G011140 ... COCNU_09G008700
Arecaceae	Phoenix dactylifera	4	gene-LOC103703458, gene-LOC103707003, gene-LOC103714880 ... gene-LOC103716511
Asparagaceae	Asparagus officinalis	2	AsparagusV1_01.706.V1.1, AsparagusV1_07.243.V1.1
Asteraceae	Flaveria trinervia	2	Ftri10G29210, Ftri15G25772
Brassicaceae	Arabidopsis thaliana	3	AT2G28830.1, AT3G46510.1, AT3G54850.1
Brassicaceae	Eutrema salsugineum	3	Thhalv10002430m.g.v1.0, Thhalv10010199m.g.v1.0 ... Thhalv10016364m.g.v1.0
Brassicaceae	Schrenkiella parvula	3	Sp4g11660.v2.2, Sp5g07570.v2.2, Sp5g15170.v2.2
Brassicaceae	Brassica nigra	4	BniB01g015020.2N, BniB05g053580.2N, BniB08g059170.2N ... BniB08g069190.2N
Casuarinaceae	Casuarina equisetifolia	3	Ceq02G0566, Ceq08G1173, Ceq08G2194
Casuarinaceae	Casuarina glauca	4	Cgl02G0580, Cgl08G1202, Cgl08G2354, Cgl08G2355
Cymodoceaceae	Cymodocea nodosa	2	gene.Cymno03g05260, gene.Cymno05g18630
Hydrocharitaceae	Thalassia testudinum	2	gene.Thate01g00570, gene.Thate08g01980
Malvaceae	Hibiscus hamabo Siebold & Zucc.	2	nbisL1-mrna-4043, nbisL1-mrna-534
Nitrariaceae	Nitraria sibirica	2	evm.TU.LG02.1077, evm.TU.LG09.1290
Plantaginaceae	Plantago ovata	2	Pov_00016151, Pov_00040306
Plumbaginaceae	Limonium bicolor	3	Lb1G05291, Lb6G31654, Lb6G31660
Poaceae	Echinochloa crus-galli	9	AH01.4170, AH05.3799, AH06.17, BH01.4488, BH05.3849, BH06.8 ... CH02.1528, CH05.4069, CH06.9
Poaceae	Eleusine coracana subsp. coracana	6	gene-QOZ80_3AG0242900, gene-QOZ80_3BG0285250 ... gene-QOZ80_5AG0394700, gene-QOZ80_5BG0442930, gene-QOZ80_6AG0505480, gene-QOZ80_6BG0457550
Poaceae	Hordeum vulgare	3	HORVU.MOREX.r3.4HG0388130.1, HORVU.MOREX.r3.5HG0441810.1 ... HORVU.MOREX.r3.7HG0634480.1
Poaceae	Lolium multiflorum	2	gene-QYE76_001658, gene-QYE76_068989
Poaceae	Oryza coarctata	6	Oco05G009570, Oco06G009920, Oco11G000150, Oco12G000090 ... Oco23G008850, Oco24G008410
Poaceae	Oryza sativa	3	LOC_Os03g16824.1, LOC_Os06g01304.1, LOC_Os12g38210.1
Poaceae	Paspalum vaginatum	3	gene-BS78_01G401000, gene-BS78_08G112800 ... gene-BS78_10G000500
Poaceae	Puccinellia tenuiflora	5	Pt_Chr0102325, Pt_Chr0301155, Pt_Chr0404067, Pt_Chr0404088 ... Pt_Chr0703985
Poaceae	Sporobolus alterniflorus	8	Chr01G031080, Chr04G007800, Chr04G017450, Chr06G018050 ... Chr07G003810, Chr12G008570, Chr14G000030, Chr14G000370
Poaceae	Thinopyrum elongatum	3	Tel4E01G364300, Tel5E01G162300, Tel7E01G011600
Poaceae	Triticum dicoccoides	6	gene_TRIDC4AG013310, gene_TRIDC4AG070720 ... gene_TRIDC4BG037090, gene_TRIDC5AG012420, gene_TRIDC5BG014370, gene_TRIDC7AG000270
Poaceae	Triticum aestivum	9	TraesCS4A02G097700.1, TraesCS4A02G498700.1 ... TraesCS4B02G206900.1, TraesCS4D02G207700.2, TraesCS5A02G078400.1, TraesCS5B02G087500.1, TraesCS5D02G093700.1, TraesCS7A02G001900.1, TraesCS7D02G001600.2
Poaceae	Zea mays	5	Zm00001eb011860_P001, Zm00001eb012430_P001 ... Zm00001eb029250_P001, Zm00001eb136450_P002, Zm00001eb379620_P001
Poaceae	Zoysia japonica	3	nbis-gene-2078, nbis-gene-30382, nbis-gene-53463
Poaceae	Zoysia macrostachya	4	Zma_g14358, Zma_g1524, Zma_g26007, Zma_g28948
Portulacaceae	Portulaca oleracea	4	evm.TU.LG03.2046, evm.TU.LG14.346, evm.TU.LG19.844 ... evm.TU.LG24.839
Posidoniaceae	Posidonia oceanica	2	gene.Posoc01g38200, gene.Posoc02g13280
Rhizophoraceae	Bruguiera sexangula	4	evm.TU.Scaffold_12_RagTag.265, evm.TU.Scaffold_13_RagTag.812 ... evm.TU.Scaffold_17_RagTag.351, evm.TU.Scaffold_4_RagTag.1594
Rhizophoraceae	Carallia pectinifolia	3	nbisL1-mrna-24538, nbisL1-mrna-26145, nbisL1-mrna-30204
Rhizophoraceae	Ceriops tagal	3	nbisL1-mrna-19664, nbisL1-mrna-6934, nbisL1-mrna-7162
Rhizophoraceae	Ceriops zippeliana	3	nbisL1-mrna-16201, nbisL1-mrna-19543, nbisL1-mrna-4415
Rhizophoraceae	Kandelia candel	3	evm.TU.utg000008l.872, evm.TU.utg000015l.485 ... evm.TU.utg000027l.413
Rhizophoraceae	Kandelia obovata	3	Maker00001400, Maker00015774, Maker00018087
Rhizophoraceae	Rhizophora apiculata	3	nbisL1-mrna-2180, nbisL1-mrna-4403, nbisL1-mrna-5573
Rhizophoraceae	Rhizophora mangle	4	nbisL1-mrna-11768, nbisL1-mrna-14976, nbisL1-mrna-7647 ... nbisL1-mrna-9575
Salicaceae	Populus euphratica	7	populus_peu02135, populus_peu05278, populus_peu06234 ... populus_peu20071, populus_peu22203, populus_peu35657, populus_peu38086
Solanaceae	Lycium barbarum	3	gene-LOC132605600, gene-LOC132615947, gene-LOC132643553
Solanaceae	Solanum chilense	3	SOLCI003200800, SOLCI004321900, SOLCI005398500
Solanaceae	Solanum pennellii	3	gene-LOC107002892, gene-LOC107005019, gene-LOC107023468
Tamaricaceae	Reaumuria soongarica	2	STRG.4903_chr03_-, STRG.7673_chr05_-
Tamaricaceae	Tamarix chinensis	3	TC02G1024, TC11G1549, TC11G2178
Zosteraceae	Zostera marina	2	Zosma01g25140.v3.1, Zosma04g22820.v3.1