halophFGD

Basic Information

Locus ID: Ag11G04634

Species & Taxonomic ID: Apium graveolens & 4045

Genome Assembly: GCA_009905375.1

Description: lysM domain receptor-like kinase 3

Maps and Mapping Data

Chromosome	Start	End	Strand	ID
chr11	189912864	189914338	-	Ag11G04634

Protein Data

Protein Properties:

Theoretical pI	Molecular Weight	Instability Index	Aliphatic Index	GRAVY
8.78	45,366.00 Da	52.09	80.93	-0.32

Protein Domain:

Category	ID	Description	Start	End	Evalue/Score	InterPro ID
Pfam	PF00069	Protein kinase domain	134	372	4.0E-25	IPR000719
SUPERFAMILY	SSF56112	Protein kinase-like (PK-like)	93	380	2.25E-40	IPR011009
Gene3D	G3DSA:1.10.510.10	Transferase(Phosphotransferase) domain 1	66	396	1.3E-41	-
ProSiteProfiles	PS50011	Protein kinase domain profile.	32	385	24.202368	IPR000719
MobiDBLite	mobidb-lite	consensus disorder prediction	1	26	-	-

Gene Ontology

Biological Process:

GO:0006468 (protein phosphorylation)

Molecular Function:

GO:0004672 (protein kinase activity) GO:0005524 (ATP binding)

KEGG Pathway

KO Term:

K04733 (interleukin-1 receptor-associated kinase 4 [EC:2.7.11.1])

Pathway:

ko04010 (MAPK signaling pathway) map04010 (MAPK signaling pathway) map04064 (NF-kappa B signaling pathway) map04620 (Toll-like receptor signaling pathway) map04621 (NOD-like receptor signaling pathway) ko04624 (Toll and Imd signaling pathway) map04624 (Toll and Imd signaling pathway)

Best hit

Source	Best Hit ID	Description
TAIR	AT3G57120.1	Protein kinase superfamily protein.
RefSeq	XP_028071375.1	lysM domain receptor-like kinase 3 [Camellia sinensis]
Swiss-Prot	F4IB81	LysM domain receptor-like kinase 3 OS=Arabidopsis thaliana OX=3702 GN=LYK3 PE=2 SV=1
TrEMBL	A0A166DRN6	Protein kinase domain-containing protein OS=Daucus carota subsp. sativus OX=79200 GN=DCAR_006427 PE=4 SV=1

Expression

BioProject	Accession	TPM	Cultivar	Tissue	Development Stage	Sample Name	Description
PRJNA723697	SRX10692252	5.964113	Shengqin NO.2	seed	S1-1	S1-1	initial formation stage (S1)
PRJNA723697	SRX10692254	3.517228	Shengqin NO.2	seed	S1-3	S1-3	initial formation stage (S1)
PRJNA723697	SRX10692255	5.054499	Shengqin NO.2	seed	S3-1	S3-1	middle development stage (S3)
PRJNA723697	SRX10692256	6.517357	Shengqin NO.2	seed	S3-2	S3-2	middle development stage (S3)
PRJNA723697	SRX10692257	6.069632	Shengqin NO.2	seed	S3-3	S3-3	middle development stage (S3)
PRJNA723697	SRX10692258	6.610918	Shengqin NO.2	seed	S5-1	S5-1	maturation stage (S5)
PRJNA723697	SRX10692259	7.398674	Shengqin NO.2	seed	S5-2	S5-2	maturation stage (S5)
PRJNA723697	SRX10692260	9.166385	Shengqin NO.2	seed	S5-3	S5-3	maturation stage (S5)
PRJNA884666	SRX17729272	7.112167	celery	anther		W99A-r1	male sterile lineÂ
PRJNA884666	SRX17729273	5.890891	celery	anther		W99A-r2	male sterile lineÂ
PRJNA884666	SRX17729274	6.92217	celery	anther		W99A-r3	male sterile lineÂ
PRJNA884666	SRX17729275	8.734426	celery	anther		W99B-r1	maintainer line
PRJNA884666	SRX17729276	6.575976	celery	anther		W99B-r2	maintainer line
PRJNA884666	SRX17729277	7.9137	celery	anther		W99B-r3	maintainer line
PRJNA884180	SRX17743889	2.234362	var. secalinum Yablochny	collenchyma		Col_S1_rep1-1
PRJNA884180	SRX17748056	2.745968	var. secalinum Yablochny	collenchyma		Col_S1_rep3	biological replicate 3
PRJNA884180	SRX17748057	3.339932	var. secalinum Yablochny	collenchyma		Col_S1_rep4	biological replicate 4
PRJNA884180	SRX17748678	5.895268	var. secalinum Yablochny	parenchyma		Par_S1_rep1	Biological replicate 1
PRJNA884180	SRX17748679	4.129839	var. secalinum Yablochny	parenchyma		Par_S1_rep2	Biological replicate 2
PRJNA884180	SRX17748680	6.002761	var. secalinum Yablochny	parenchyma		Par_S1_rep3	Biological replicate 3
PRJNA884180	SRX17748681	6.726547	var. secalinum Yablochny	parenchyma		Par_S1_rep4	Biological replicate 4
PRJNA884180	SRX17748898	6.3305	var. secalinum Yablochny	vascular bundle		Vas_S1_rep1	Biological replicate 1
PRJNA884180	SRX17748899	8.606418	var. secalinum Yablochny	vascular bundle		Vas_S1_rep2	Biological replicate 2
PRJNA884180	SRX17748900	5.730341	var. secalinum Yablochny	vascular bundle		Vas_S1_rep3	Biological replicate 3
PRJNA884180	SRX17748901	3.981354	var. secalinum Yablochny	vascular bundle		Vas_S1_rep4	Biological replicate 4
PRJNA884180	SRX17749129	5.674899	var. secalinum Yablochny	part of the celery petiole without collenchyma strands		Collenchyma-free_S1_rep1	Biological replicate 1
PRJNA884180	SRX17749130	5.888015	var. secalinum Yablochny	part of the celery petiole without collenchyma strands		Collenchyma-free_S1_rep2	Biological replicate 2
PRJNA884180	SRX17749131	5.756952	var. secalinum Yablochny	part of the celery petiole without collenchyma strands		Collenchyma-free_S1_rep3	Biological replicate 3
PRJNA884180	SRX17749132	4.538517	var. secalinum Yablochny	part of the celery petiole without collenchyma strands		Collenchyma-free_S1_rep4	Biological replicate 4
PRJNA1124269	SRX24936411	3.825856		leaf		CK1	replicate=biological replicate1
PRJNA1124269	SRX24936412	4.250387		leaf		CK2	replicate=biological replicate2
PRJNA1124269	SRX24936413	3.717024		leaf		CK3	replicate=biological replicate3
PRJNA1124269	SRX24936414	4.385323		leaf		D1	replicate=biological replicate1
PRJNA1124269	SRX24936415	4.636145		leaf		D2	replicate=biological replicate2
PRJNA1124269	SRX24936416	3.115905		leaf		D3	replicate=biological replicate3
PRJNA1124269	SRX24936417	1.322057		leaf		MD1	replicate=biological replicate1
PRJNA1124269	SRX24936418	2.557981		leaf		MD2	replicate=biological replicate2
PRJNA1124269	SRX24936419	1.699929		leaf		MD3	replicate=biological replicate3
PRJNA387092	SRX2833309	1.999571	shanghaihuangxin	leaf	leaves between 0.5 and 1 cm in breadth, folded;	stage 2
PRJNA387092	SRX2833321	1.638515	shanghaihuangxin	leaf	leaves between 2and 2.5 cm in breadth, nearly unfolded, with clear stem exten-sion	stage 5
PRJNA387092	SRX2833323	1.24859	shanghaihuangxin	leaf	leaves >3 cm, unfolded, with clearstem extension	stage 7
PRJNA543957	SRX5879598	7.208707	Zhangzhou lvqing	stem		Se3	100 ppm Na2SeO4
PRJNA543957	SRX5879599	6.666245	Zhangzhou lvqing	stem		Se2	100 ppm Na2SeO4
PRJNA543957	SRX5879600	6.465763	Zhangzhou lvqing	stem		Mock2	mock
PRJNA543957	SRX5879601	5.16622	Zhangzhou lvqing	stem		Mock1	mock
PRJNA543957	SRX5879602	6.798999	Zhangzhou lvqing	stem		Se1	100 ppm Na2SeO4
PRJNA543957	SRX5879603	9.677575	Zhangzhou lvqing	stem		Mock3	mock
PRJNA609149	SRX7815917	10.820978	Jinnan Shiqin	flower bud	early flower bud	early flower bud
PRJNA609149	SRX7815918	9.980828	Jinnan Shiqin	flower bud	middle flower bud	middle flower bud
PRJNA609149	SRX7815919	9.622403	Jinnan Shiqin	flower bud	early flowering period	early flowering period

Network

🔍 Co-expression Network

🔍 Protein-Protein Interaction Network

Orthology

Family	Species	Count	Orthologous Genes
Acanthaceae	Avicennia marina	3	jg14547, jg2773, jg8239
Aizoaceae	Mesembryanthemum crystallinum	2	gene_1573, gene_3325
Amaranthaceae	Atriplex hortensis	2	Ah022704, Ah037904
Amaranthaceae	Beta vulgaris	2	BVRB_1g001490, BVRB_9g205340
Amaranthaceae	Salicornia bigelovii	4	Sbi_jg2628, Sbi_jg3737, Sbi_jg48991, Sbi_jg60105
Amaranthaceae	Salicornia europaea	2	Seu_jg24287, Seu_jg6244
Amaranthaceae	Suaeda aralocaspica	2	GOSA_00000725, GOSA_00015867
Amaranthaceae	Suaeda glauca	5	Sgl10748, Sgl16104, Sgl78459, Sgl78468, Sgl80968
Amaranthaceae	Chenopodium album	4	gene:ENSEOMG00000016122, gene:ENSEOMG00000017093 ... gene:ENSEOMG00000036275, gene:ENSEOMG00000052149
Amaranthaceae	Chenopodium quinoa	4	CQ.Regalona.r1.1AG0003840, CQ.Regalona.r1.2BG0027510 ... CQ.Regalona.r1.9AG0004370, CQ.Regalona.r1.9BG0017910
Apiaceae	Apium graveolens	2	Ag11G04634, Ag6G02261
Arecaceae	Cocos nucifera	3	COCNU_07G010500, COCNU_09G008590, scaffold124390G000010
Arecaceae	Phoenix dactylifera	4	gene-LOC103695734, gene-LOC103705449, gene-LOC103707015 ... gene-LOC120109503
Asparagaceae	Asparagus officinalis	1	AsparagusV1_07.1886.V1.1
Asteraceae	Flaveria trinervia	3	Ftri16G00423, FtriNA12129, FtriNA16823
Brassicaceae	Arabidopsis thaliana	1	AT3G57120.1
Brassicaceae	Eutrema salsugineum	1	Thhalv10005991m.g.v1.0
Brassicaceae	Schrenkiella parvula	1	Sp5g05450.v2.2
Brassicaceae	Brassica nigra	2	BniB06g056060.2N, BniB08g071880.2N
Cymodoceaceae	Cymodocea nodosa	1	gene.Cymno14g01580
Hydrocharitaceae	Thalassia testudinum	1	gene.Thate08g22180
Malvaceae	Hibiscus hamabo Siebold & Zucc.	1	nbisL1-mrna-7341
Nitrariaceae	Nitraria sibirica	2	evm.TU.LG02.1050, evm.TU.LG09.881
Plantaginaceae	Plantago ovata	3	Pov_00015959, Pov_00018278, Pov_00040299
Plumbaginaceae	Limonium bicolor	2	Lb1G05266, Lb1G05273
Poaceae	Echinochloa crus-galli	1	AH06.800
Poaceae	Eleusine coracana subsp. coracana	4	gene-QOZ80_2AG0150690, gene-QOZ80_2BG0206120 ... gene-QOZ80_6AG0513760, gene-QOZ80_6BG0465520
Poaceae	Hordeum vulgare	1	HORVU.MOREX.r3.6HG0630250.1.CDS1
Poaceae	Lolium multiflorum	2	gene-QYE76_020601, gene-QYE76_026533
Poaceae	Oryza coarctata	3	Oco03G025510, Oco04G026000, Oco17G012390
Poaceae	Oryza sativa	2	LOC_Os02g57440.1, LOC_Os09g39860.1
Poaceae	Paspalum vaginatum	3	gene-BS78_04G322400, gene-BS78_10G088400, gene-BS78_K107400
Poaceae	Puccinellia tenuiflora	1	Pt_Chr0604502
Poaceae	Sporobolus alterniflorus	4	Chr11G020140, Chr14G003810, Chr15G000580, Chr21G003130
Poaceae	Thinopyrum elongatum	2	Tel4E01G016500, Tel6E01G715500
Poaceae	Triticum dicoccoides	3	gene_TRIDC4BG001750, gene_TRIDC6AG058460 ... gene_TRIDC6BG069090
Poaceae	Triticum aestivum	5	TraesCS4B02G002500.1.cds1, TraesCS4D02G000800.1.cds1 ... TraesCS6A02G396300.1.cds1, TraesCS6B02G436300.1.cds1, TraesCS6D02G381200.1.cds1
Poaceae	Zea mays	4	Zm00001eb191240_P001, Zm00001eb259120_P001 ... Zm00001eb279230_P001, Zm00001eb373000_P001
Poaceae	Zoysia japonica	2	nbis-gene-35066, nbis-gene-8294
Poaceae	Zoysia macrostachya	2	Zma_g14724, Zma_g31586
Portulacaceae	Portulaca oleracea	4	evm.TU.LG04.2042, evm.TU.LG06.280, evm.TU.LG16.1605 ... evm.TU.LG26.64
Posidoniaceae	Posidonia oceanica	2	gene.Posoc02g13150, gene.Posoc06g06650
Rhizophoraceae	Bruguiera sexangula	2	evm.TU.Scaffold_11_RagTag.507, evm.TU.Scaffold_13_RagTag.681
Rhizophoraceae	Carallia pectinifolia	3	nbisL1-mrna-24351, nbisL1-mrna-24453, nbisL1-mrna-30384
Rhizophoraceae	Ceriops tagal	2	nbisL1-mrna-1511, nbisL1-mrna-8160
Rhizophoraceae	Ceriops zippeliana	3	nbisL1-mrna-14112, nbisL1-mrna-16065, nbisL1-mrna-19660
Rhizophoraceae	Kandelia candel	3	add.evm.TU.utg000005l.27, add.evm.TU.utg000015l.148 ... add.evm.TU.utg000027l.146
Rhizophoraceae	Kandelia obovata	2	Maker00015269, Maker00018229
Rhizophoraceae	Rhizophora apiculata	3	nbisL1-mrna-17138, nbisL1-mrna-18440, nbisL1-mrna-18996
Rhizophoraceae	Rhizophora mangle	3	nbisL1-mrna-11882, nbisL1-mrna-15111, nbisL1-mrna-20656
Salicaceae	Populus euphratica	6	populus_peu06248, populus_peu06249, populus_peu09705 ... populus_peu20085, populus_peu35462, populus_peu37484
Solanaceae	Lycium barbarum	2	gene-LOC132604790, gene-LOC132640012
Solanaceae	Solanum chilense	2	SOLCI000362200, SOLCI006198600
Solanaceae	Solanum pennellii	2	gene-LOC107019016, gene-LOC107021430
Tamaricaceae	Reaumuria soongarica	2	STRG.21366_chr09_+, STRG.32524_chr09_-
Tamaricaceae	Tamarix chinensis	2	TC02G1215, TC03G1453
Zosteraceae	Zostera marina	1	Zosma05g32210.v3.1