Basic Information
Locus ID:
Ag11G04605
Species & Taxonomic ID:
Apium graveolens & 4045
Genome Assembly:
GCA_009905375.1
Description:
Transmembrane protein 115-like
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr11 | 188244498 | 188248487 | - | Ag11G04605 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.83 | 33,902.91 Da | 43.04 | 107.63 | 0.35 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF08551 | Eukaryotic integral membrane protein (DUF1751) | 48 | 146 | 1.5E-31 | IPR013861 |
| SUPERFAMILY | SSF144091 | Rhomboid-like | 18 | 206 | 6.02E-12 | IPR035952 |
| Gene3D | G3DSA:1.20.1540.10 | - | 16 | 211 | 4.3E-7 | IPR035952 |
| SMART | SM01160 | DUF1751_2 | 48 | 146 | 9.9E-43 | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 289 | 308 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 253 | 278 | - | - |
Gene Ontology
Biological Process:
Cellular Component:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G07950.1 | rhomboid protein-related. | 0 |
| RefSeq | XP_017231706.1 | PREDICTED: rhomboid-like protein 19 [Daucus carota subsp. sativus] | 0 |
| Q8LF05 | Rhomboid-like protein 19 OS=Arabidopsis thaliana OX=3702 GN=RBL19 PE=2 SV=1 | 0 | |
| TrEMBL | A0A166DS75 | Rhomboid-like protein 19 OS=Daucus carota subsp. sativus OX=79200 GN=DCAR_006448 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| PRJNA723697 | SRX10692252 | 48.688519 | Shengqin NO.2 | seed | S1-1 | S1-1 | initial formation stage (S1) |
| PRJNA723697 | SRX10692254 | 44.388744 | Shengqin NO.2 | seed | S1-3 | S1-3 | initial formation stage (S1) |
| PRJNA723697 | SRX10692255 | 43.561832 | Shengqin NO.2 | seed | S3-1 | S3-1 | middle development stage (S3) |
| PRJNA723697 | SRX10692256 | 44.247429 | Shengqin NO.2 | seed | S3-2 | S3-2 | middle development stage (S3) |
| PRJNA723697 | SRX10692257 | 39.205757 | Shengqin NO.2 | seed | S3-3 | S3-3 | middle development stage (S3) |
| PRJNA723697 | SRX10692258 | 33.484451 | Shengqin NO.2 | seed | S5-1 | S5-1 | maturation stage (S5) |
| PRJNA723697 | SRX10692259 | 35.732162 | Shengqin NO.2 | seed | S5-2 | S5-2 | maturation stage (S5) |
| PRJNA723697 | SRX10692260 | 18.638195 | Shengqin NO.2 | seed | S5-3 | S5-3 | maturation stage (S5) |
| PRJNA884666 | SRX17729272 | 44.229382 | celery | anther | W99A-r1 | male sterile line | |
| PRJNA884666 | SRX17729273 | 42.667858 | celery | anther | W99A-r2 | male sterile line | |
| PRJNA884666 | SRX17729274 | 44.462166 | celery | anther | W99A-r3 | male sterile line | |
| PRJNA884666 | SRX17729275 | 45.837906 | celery | anther | W99B-r1 | maintainer line | |
| PRJNA884666 | SRX17729276 | 46.691521 | celery | anther | W99B-r2 | maintainer line | |
| PRJNA884666 | SRX17729277 | 42.846294 | celery | anther | W99B-r3 | maintainer line | |
| PRJNA884180 | SRX17743889 | 163.921875 | var. secalinum Yablochny | collenchyma | Col_S1_rep1-1 | ||
| PRJNA884180 | SRX17748056 | 148.42189 | var. secalinum Yablochny | collenchyma | Col_S1_rep3 | biological replicate 3 | |
| PRJNA884180 | SRX17748057 | 137.736435 | var. secalinum Yablochny | collenchyma | Col_S1_rep4 | biological replicate 4 | |
| PRJNA884180 | SRX17748678 | 89.368912 | var. secalinum Yablochny | parenchyma | Par_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17748679 | 78.710258 | var. secalinum Yablochny | parenchyma | Par_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17748680 | 99.929695 | var. secalinum Yablochny | parenchyma | Par_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17748681 | 76.749557 | var. secalinum Yablochny | parenchyma | Par_S1_rep4 | Biological replicate 4 | |
| PRJNA884180 | SRX17748898 | 81.340912 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17748899 | 83.024139 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17748900 | 86.182808 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17748901 | 78.829361 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep4 | Biological replicate 4 | |
| PRJNA884180 | SRX17749129 | 70.847984 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17749130 | 97.319786 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17749131 | 66.311363 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17749132 | 83.448265 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep4 | Biological replicate 4 | |
| PRJNA1124269 | SRX24936411 | 30.84432 | leaf | CK1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936412 | 32.163452 | leaf | CK2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936413 | 33.302917 | leaf | CK3 | replicate=biological replicate3 | ||
| PRJNA1124269 | SRX24936414 | 43.223061 | leaf | D1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936415 | 50.60833 | leaf | D2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936416 | 31.192369 | leaf | D3 | replicate=biological replicate3 | ||
| PRJNA1124269 | SRX24936417 | 37.064148 | leaf | MD1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936418 | 28.780119 | leaf | MD2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936419 | 35.862526 | leaf | MD3 | replicate=biological replicate3 | ||
| PRJNA387092 | SRX2833309 | 33.087097 | shanghaihuangxin | leaf | leaves between 0.5 and 1 cm in breadth, folded; | stage 2 | |
| PRJNA387092 | SRX2833321 | 22.083635 | shanghaihuangxin | leaf | leaves between 2and 2.5 cm in breadth, nearly unfolded, with clear stem exten-sion | stage 5 | |
| PRJNA387092 | SRX2833323 | 15.196625 | shanghaihuangxin | leaf | leaves >3 cm, unfolded, with clearstem extension | stage 7 | |
| PRJNA543957 | SRX5879598 | 34.065704 | Zhangzhou lvqing | stem | Se3 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879599 | 44.883083 | Zhangzhou lvqing | stem | Se2 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879600 | 71.530884 | Zhangzhou lvqing | stem | Mock2 | mock | |
| PRJNA543957 | SRX5879601 | 62.163216 | Zhangzhou lvqing | stem | Mock1 | mock | |
| PRJNA543957 | SRX5879602 | 49.417507 | Zhangzhou lvqing | stem | Se1 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879603 | 61.912457 | Zhangzhou lvqing | stem | Mock3 | mock | |
| PRJNA609149 | SRX7815917 | 59.431965 | Jinnan Shiqin | flower bud | early flower bud | early flower bud | |
| PRJNA609149 | SRX7815918 | 51.836327 | Jinnan Shiqin | flower bud | middle flower bud | middle flower bud | |
| PRJNA609149 | SRX7815919 | 58.730885 | Jinnan Shiqin | flower bud | early flowering period | early flowering period |
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Acanthaceae | Avicennia marina | 2 | jg2748, jg9798 |
| Aizoaceae | Mesembryanthemum crystallinum | 1 | gene_7714 |
| Amaranthaceae | Atriplex hortensis | 1 | Ah036055 |
| Amaranthaceae | Salicornia bigelovii | 2 | Sbi_jg39954, Sbi_jg55285 |
| Amaranthaceae | Salicornia europaea | 1 | Seu_jg14379 |
| Amaranthaceae | Suaeda aralocaspica | 1 | GOSA_00014141 |
| Amaranthaceae | Suaeda glauca | 5 | Sgl12102, Sgl12117, Sgl17396, Sgl24729, Sgl29881 |
| Amaranthaceae | Chenopodium album | 4 | gene:ENSEOMG00000010849, gene:ENSEOMG00000020525 ... |
| Amaranthaceae | Chenopodium quinoa | 2 | CQ.Regalona.r1.1AG0022180, CQ.Regalona.r1.1BG0002170 |
| Anacardiaceae | Pistacia vera | 1 | pistato.v30171260 |
| Apiaceae | Apium graveolens | 1 | Ag11G04605 |
| Arecaceae | Cocos nucifera | 2 | COCNU_10G000170, scaffold087982G000020 |
| Arecaceae | Phoenix dactylifera | 4 | gene-LOC103703978, gene-LOC103708396, gene-LOC113460989 ... |
| Asparagaceae | Asparagus officinalis | 1 | AsparagusV1_04.12.V1.1 |
| Asteraceae | Flaveria trinervia | 1 | Ftri18G11150 |
| Brassicaceae | Arabidopsis thaliana | 1 | AT3G07950.1 |
| Brassicaceae | Eutrema salsugineum | 1 | Thhalv10021192m.g.v1.0 |
| Brassicaceae | Schrenkiella parvula | 1 | Sp3g06860.v2.2 |
| Brassicaceae | Brassica nigra | 2 | BniB01g056080.2N, BniB07g058770.2N |
| Casuarinaceae | Casuarina equisetifolia | 1 | Ceq02G0628 |
| Cymodoceaceae | Cymodocea nodosa | 1 | gene.Cymno05g16450 |
| Dunaliellaceae | Dunaliella salina | 1 | Dusal.0081s00034.v1.0 |
| Hydrocharitaceae | Thalassia testudinum | 3 | gene.Thate01g33840, gene.Thate02g11260, gene.Thate06g00010 |
| Malvaceae | Hibiscus hamabo Siebold & Zucc. | 1 | nbisL1-mrna-4033 |
| Nitrariaceae | Nitraria sibirica | 1 | evm.TU.LG02.1447 |
| Plantaginaceae | Plantago ovata | 1 | Pov_00012716 |
| Plumbaginaceae | Limonium bicolor | 3 | Lb1G04604, Lb1G04608, Lb2G12410 |
| Poaceae | Echinochloa crus-galli | 9 | AH01.3582, AH03.3915, AH09.30, BH01.3930, BH03.4205, CH09.74 ... |
| Poaceae | Eleusine coracana subsp. coracana | 5 | gene-QOZ80_3AG0248930, gene-QOZ80_4AG0328240 ... |
| Poaceae | Hordeum vulgare | 2 | HORVU.MOREX.r3.2HG0100660.1, HORVU.MOREX.r3.2HG0117980.1 |
| Poaceae | Lolium multiflorum | 3 | gene-QYE76_016738, gene-QYE76_038097, gene-QYE76_039175 |
| Poaceae | Oryza coarctata | 6 | Oco05G013910, Oco06G012420, Oco07G001120, Oco08G000120 ... |
| Poaceae | Oryza sativa | 3 | LOC_Os03g24390.1, LOC_Os04g01300.2, LOC_Os07g46170.1 |
| Poaceae | Paspalum vaginatum | 4 | gene-BS78_01G349200, gene-BS78_02G373200 ... |
| Poaceae | Puccinellia tenuiflora | 3 | Pt_Chr0102753, Pt_Chr0305018, Pt_Chr0305979 |
| Poaceae | Sporobolus alterniflorus | 11 | Chr04G011710, Chr07G011120, Chr0G002910, Chr0G003120 ... |
| Poaceae | Thinopyrum elongatum | 2 | Tel2E01G100500, Tel2E01G278500 |
| Poaceae | Triticum dicoccoides | 5 | gene_TRIDC1BG052060, gene_TRIDC2AG004250 ... |
| Poaceae | Triticum aestivum | 6 | TraesCS2A02G040100.2, TraesCS2A02G135700.1 ... |
| Poaceae | Zea mays | 5 | Zm00001eb017450_P004, Zm00001eb089590_P003 ... |
| Poaceae | Zoysia japonica | 4 | nbis-gene-1523, nbis-gene-33148, nbis-gene-37560 ... |
| Poaceae | Zoysia macrostachya | 4 | Zma_g1173, Zma_g19213, Zma_g20779, Zma_g5696 |
| Portulacaceae | Portulaca oleracea | 2 | evm.TU.LG06.1855, evm.TU.LG11.1224 |
| Posidoniaceae | Posidonia oceanica | 2 | gene.Posoc01g34310, gene.Posoc06g00010 |
| Rhizophoraceae | Bruguiera sexangula | 2 | evm.TU.Scaffold_11_RagTag.568, evm.TU.Scaffold_4_RagTag.1634 |
| Rhizophoraceae | Carallia pectinifolia | 2 | nbisL1-mrna-13966, nbisL1-mrna-26108 |
| Rhizophoraceae | Ceriops tagal | 1 | nbisL1-mrna-19167 |
| Rhizophoraceae | Ceriops zippeliana | 2 | nbisL1-mrna-14118, nbisL1-mrna-4450 |
| Rhizophoraceae | Kandelia candel | 1 | evm.TU.utg000008l.899 |
| Rhizophoraceae | Kandelia obovata | 1 | Maker00001078 |
| Rhizophoraceae | Rhizophora apiculata | 2 | nbisL1-mrna-1026, nbisL1-mrna-2152 |
| Rhizophoraceae | Rhizophora mangle | 2 | nbisL1-mrna-20665, nbisL1-mrna-9540 |
| Salicaceae | Populus euphratica | 1 | populus_peu06289 |
| Solanaceae | Lycium barbarum | 1 | gene-LOC132613704 |
| Solanaceae | Solanum chilense | 1 | SOLCI001477700 |
| Solanaceae | Solanum pennellii | 1 | gene-LOC107015615 |
| Tamaricaceae | Reaumuria soongarica | 1 | STRG.32579_chr09_+ |
| Tamaricaceae | Tamarix chinensis | 1 | TC02G1276 |
| Zosteraceae | Zostera marina | 1 | Zosma01g38890.v3.1 |