halophFGD

Basic Information

Locus ID: Ag11G04604

Species & Taxonomic ID: Apium graveolens & 4045

Genome Assembly: GCA_009905375.1

Description: F-Box protein

Maps and Mapping Data

Chromosome	Start	End	Strand	ID
chr11	188225979	188227244	-	Ag11G04604

Protein Data

Protein Properties:

Theoretical pI	Molecular Weight	Instability Index	Aliphatic Index	GRAVY
8.71	48,284.29 Da	49.73	86.08	-0.22

Protein Domain:

Category	ID	Description	Start	End	Evalue/Score	InterPro ID
Pfam	PF00646	F-box domain	31	65	9.4E-9	IPR001810
SUPERFAMILY	SSF81383	F-box domain	30	77	7.59E-14	IPR036047
Gene3D	G3DSA:1.20.1280.50	-	31	67	8.6E-9	-
SMART	SM00256	fbox_2	31	71	1.1E-4	IPR001810
TIGRFAM	TIGR01640	F_box_assoc_1: F-box protein interaction domain	142	338	1.1E-14	IPR017451
ProSiteProfiles	PS50181	F-box domain profile.	25	72	8.676143	IPR001810

Gene Ontology

Molecular Function:

GO:0005515 (protein binding)

Best hit

Source	Best Hit ID	Description
TAIR	AT3G21120.1	F-box and associated interaction domains-containing protein.
RefSeq	XP_017259065.1	PREDICTED: F-box protein At3g07870-like [Daucus carota subsp. sativus]
Swiss-Prot	Q9LJC0	Putative F-box protein At3g21120 OS=Arabidopsis thaliana OX=3702 GN=At3g21120 PE=4 SV=1
TrEMBL	A0A6L5B983	F-box domain-containing protein OS=Apium graveolens OX=4045 GN=AG4045_004719 PE=4 SV=1

Expression

BioProject	Accession	TPM	Cultivar	Tissue	Development Stage	Sample Name	Description
PRJNA723697	SRX10692252	0.731743	Shengqin NO.2	seed	S1-1	S1-1	initial formation stage (S1)
PRJNA723697	SRX10692254	0.514101	Shengqin NO.2	seed	S1-3	S1-3	initial formation stage (S1)
PRJNA723697	SRX10692255	1.411038	Shengqin NO.2	seed	S3-1	S3-1	middle development stage (S3)
PRJNA723697	SRX10692256	1.702416	Shengqin NO.2	seed	S3-2	S3-2	middle development stage (S3)
PRJNA723697	SRX10692257	1.134012	Shengqin NO.2	seed	S3-3	S3-3	middle development stage (S3)
PRJNA723697	SRX10692258	0.498896	Shengqin NO.2	seed	S5-1	S5-1	maturation stage (S5)
PRJNA723697	SRX10692259	1.088256	Shengqin NO.2	seed	S5-2	S5-2	maturation stage (S5)
PRJNA723697	SRX10692260	0.441048	Shengqin NO.2	seed	S5-3	S5-3	maturation stage (S5)
PRJNA884666	SRX17729272	1.364508	celery	anther		W99A-r1	male sterile lineÂ
PRJNA884666	SRX17729273	1.990205	celery	anther		W99A-r2	male sterile lineÂ
PRJNA884666	SRX17729274	1.799609	celery	anther		W99A-r3	male sterile lineÂ
PRJNA884666	SRX17729275	1.270671	celery	anther		W99B-r1	maintainer line
PRJNA884666	SRX17729276	1.52082	celery	anther		W99B-r2	maintainer line
PRJNA884666	SRX17729277	1.581434	celery	anther		W99B-r3	maintainer line
PRJNA884180	SRX17743889	0.009347	var. secalinum Yablochny	collenchyma		Col_S1_rep1-1
PRJNA884180	SRX17748056	0.1534	var. secalinum Yablochny	collenchyma		Col_S1_rep3	biological replicate 3
PRJNA884180	SRX17748057	0.06248	var. secalinum Yablochny	collenchyma		Col_S1_rep4	biological replicate 4
PRJNA884180	SRX17748678	0.069621	var. secalinum Yablochny	parenchyma		Par_S1_rep1	Biological replicate 1
PRJNA884180	SRX17748679	0.303026	var. secalinum Yablochny	parenchyma		Par_S1_rep2	Biological replicate 2
PRJNA884180	SRX17748680	0.149966	var. secalinum Yablochny	parenchyma		Par_S1_rep3	Biological replicate 3
PRJNA884180	SRX17748681	0.547529	var. secalinum Yablochny	parenchyma		Par_S1_rep4	Biological replicate 4
PRJNA884180	SRX17748898	1.561734	var. secalinum Yablochny	vascular bundle		Vas_S1_rep1	Biological replicate 1
PRJNA884180	SRX17748899	2.22015	var. secalinum Yablochny	vascular bundle		Vas_S1_rep2	Biological replicate 2
PRJNA884180	SRX17748900	2.069054	var. secalinum Yablochny	vascular bundle		Vas_S1_rep3	Biological replicate 3
PRJNA884180	SRX17748901	2.630647	var. secalinum Yablochny	vascular bundle		Vas_S1_rep4	Biological replicate 4
PRJNA884180	SRX17749129	0.911543	var. secalinum Yablochny	part of the celery petiole without collenchyma strands		Collenchyma-free_S1_rep1	Biological replicate 1
PRJNA884180	SRX17749130	0.520083	var. secalinum Yablochny	part of the celery petiole without collenchyma strands		Collenchyma-free_S1_rep2	Biological replicate 2
PRJNA884180	SRX17749131	0.058363	var. secalinum Yablochny	part of the celery petiole without collenchyma strands		Collenchyma-free_S1_rep3	Biological replicate 3
PRJNA884180	SRX17749132	0.581079	var. secalinum Yablochny	part of the celery petiole without collenchyma strands		Collenchyma-free_S1_rep4	Biological replicate 4
PRJNA1124269	SRX24936411	0		leaf		CK1	replicate=biological replicate1
PRJNA1124269	SRX24936412	0.067995		leaf		CK2	replicate=biological replicate2
PRJNA1124269	SRX24936413	0.108048		leaf		CK3	replicate=biological replicate3
PRJNA1124269	SRX24936414	0		leaf		D1	replicate=biological replicate1
PRJNA1124269	SRX24936415	0.77008		leaf		D2	replicate=biological replicate2
PRJNA1124269	SRX24936416	0		leaf		D3	replicate=biological replicate3
PRJNA1124269	SRX24936417	0		leaf		MD1	replicate=biological replicate1
PRJNA1124269	SRX24936418	0		leaf		MD2	replicate=biological replicate2
PRJNA1124269	SRX24936419	0		leaf		MD3	replicate=biological replicate3
PRJNA387092	SRX2833309	0.350058	shanghaihuangxin	leaf	leaves between 0.5 and 1 cm in breadth, folded;	stage 2
PRJNA387092	SRX2833321	0.229619	shanghaihuangxin	leaf	leaves between 2and 2.5 cm in breadth, nearly unfolded, with clear stem exten-sion	stage 5
PRJNA387092	SRX2833323	0	shanghaihuangxin	leaf	leaves >3 cm, unfolded, with clearstem extension	stage 7
PRJNA543957	SRX5879598	0.052809	Zhangzhou lvqing	stem		Se3	100 ppm Na2SeO4
PRJNA543957	SRX5879599	0	Zhangzhou lvqing	stem		Se2	100 ppm Na2SeO4
PRJNA543957	SRX5879600	0.299547	Zhangzhou lvqing	stem		Mock2	mock
PRJNA543957	SRX5879601	0.451476	Zhangzhou lvqing	stem		Mock1	mock
PRJNA543957	SRX5879602	0	Zhangzhou lvqing	stem		Se1	100 ppm Na2SeO4
PRJNA543957	SRX5879603	0.788378	Zhangzhou lvqing	stem		Mock3	mock
PRJNA609149	SRX7815917	0.52222	Jinnan Shiqin	flower bud	early flower bud	early flower bud
PRJNA609149	SRX7815918	1.935383	Jinnan Shiqin	flower bud	middle flower bud	middle flower bud
PRJNA609149	SRX7815919	1.78639	Jinnan Shiqin	flower bud	early flowering period	early flowering period

Network

🔍 Co-expression Network

🔍 Protein-Protein Interaction Network

Orthology

Family	Species	Count	Orthologous Genes
Apiaceae	Apium graveolens	28	Ag11G04604, Ag1G01383, Ag3G00069, Ag3G01716, Ag5G02836 ... Ag6G00270, Ag6G00271, Ag6G00272, Ag7G00151, Ag7G00152, Ag7G00420, Ag7G00421, Ag7G00422, Ag7G00423, Ag7G00424, Ag7G02451, Ag9G00609, Ag9G00610, Ag9G02156, Ag9G02524, Ag9G02573, Ag9G02632, Ag9G02633, Ag9G02645, Ag9G02649, AgUnG00927, AgUnG00928, AgUnG01362