halophFGD

Basic Information

Locus ID: Ag11G04546

Species & Taxonomic ID: Apium graveolens & 4045

Genome Assembly: GCA_009905375.1

Description: receptor-like protein kinase

Maps and Mapping Data

Chromosome	Start	End	Strand	ID
chr11	185884438	185893668	+	Ag11G04546

Protein Data

Protein Properties:

Theoretical pI	Molecular Weight	Instability Index	Aliphatic Index	GRAVY
8.50	62,743.41 Da	38.35	77.07	-0.51

Protein Domain:

Category	ID	Description	Start	End	Evalue/Score	InterPro ID
Pfam	PF07714	Protein tyrosine and serine/threonine kinase	315	417	3.9E-15	IPR001245
SUPERFAMILY	SSF56112	Protein kinase-like (PK-like)	399	471	5.3E-5	IPR011009
SUPERFAMILY	SSF56112	Protein kinase-like (PK-like)	293	401	2.53E-25	IPR011009
Gene3D	G3DSA:3.30.200.20	Phosphorylase Kinase; domain 1	284	384	1.7E-33	-
Gene3D	G3DSA:1.10.510.10	Transferase(Phosphotransferase) domain 1	385	493	1.4E-7	-
ProSiteProfiles	PS50011	Protein kinase domain profile.	311	560	12.683158	IPR000719
MobiDBLite	mobidb-lite	consensus disorder prediction	484	520	-	-
MobiDBLite	mobidb-lite	consensus disorder prediction	484	508	-	-

Gene Ontology

Biological Process:

GO:0006468 (protein phosphorylation)

Molecular Function:

GO:0004672 (protein kinase activity) GO:0005524 (ATP binding)

KEGG Pathway

KO Term:

K04733 (interleukin-1 receptor-associated kinase 4 [EC:2.7.11.1])

Pathway:

ko04010 (MAPK signaling pathway) map04010 (MAPK signaling pathway) map04064 (NF-kappa B signaling pathway) map04620 (Toll-like receptor signaling pathway) map04621 (NOD-like receptor signaling pathway) ko04624 (Toll and Imd signaling pathway) map04624 (Toll and Imd signaling pathway)

Best hit

Source	Best Hit ID	Description
TAIR	AT1G55200.1	Protein kinase protein with adenine nucleotide alpha hydrolases-like domain.
RefSeq	XP_017225958.1	PREDICTED: probable serine/threonine-protein kinase RLCKVII isoform X2 [Daucus carota subsp. sativus]
Swiss-Prot	P0DH62	Inactive protein kinase SELMODRAFT_444075 OS=Selaginella moellendorffii OX=88036 GN=SELMODRAFT_444075 PE=2 SV=1
TrEMBL	A0A175YH49	Protein kinase domain-containing protein OS=Daucus carota subsp. sativus OX=79200 GN=DCAR_029721 PE=4 SV=1

Expression

BioProject	Accession	TPM	Cultivar	Tissue	Development Stage	Sample Name	Description
PRJNA723697	SRX10692252	5.925189	Shengqin NO.2	seed	S1-1	S1-1	initial formation stage (S1)
PRJNA723697	SRX10692254	0.99235	Shengqin NO.2	seed	S1-3	S1-3	initial formation stage (S1)
PRJNA723697	SRX10692255	1.143602	Shengqin NO.2	seed	S3-1	S3-1	middle development stage (S3)
PRJNA723697	SRX10692256	1.137537	Shengqin NO.2	seed	S3-2	S3-2	middle development stage (S3)
PRJNA723697	SRX10692257	1.449831	Shengqin NO.2	seed	S3-3	S3-3	middle development stage (S3)
PRJNA723697	SRX10692258	1.119152	Shengqin NO.2	seed	S5-1	S5-1	maturation stage (S5)
PRJNA723697	SRX10692259	1.394419	Shengqin NO.2	seed	S5-2	S5-2	maturation stage (S5)
PRJNA723697	SRX10692260	1.318349	Shengqin NO.2	seed	S5-3	S5-3	maturation stage (S5)
PRJNA884666	SRX17729272	1.254725	celery	anther		W99A-r1	male sterile lineÂ
PRJNA884666	SRX17729273	1.865758	celery	anther		W99A-r2	male sterile lineÂ
PRJNA884666	SRX17729274	1.744109	celery	anther		W99A-r3	male sterile lineÂ
PRJNA884666	SRX17729275	1.030463	celery	anther		W99B-r1	maintainer line
PRJNA884666	SRX17729276	1.049555	celery	anther		W99B-r2	maintainer line
PRJNA884666	SRX17729277	0.803156	celery	anther		W99B-r3	maintainer line
PRJNA884180	SRX17743889	2.326778	var. secalinum Yablochny	collenchyma		Col_S1_rep1-1
PRJNA884180	SRX17748056	2.208475	var. secalinum Yablochny	collenchyma		Col_S1_rep3	biological replicate 3
PRJNA884180	SRX17748057	2.34646	var. secalinum Yablochny	collenchyma		Col_S1_rep4	biological replicate 4
PRJNA884180	SRX17748678	2.015203	var. secalinum Yablochny	parenchyma		Par_S1_rep1	Biological replicate 1
PRJNA884180	SRX17748679	1.417457	var. secalinum Yablochny	parenchyma		Par_S1_rep2	Biological replicate 2
PRJNA884180	SRX17748680	1.088592	var. secalinum Yablochny	parenchyma		Par_S1_rep3	Biological replicate 3
PRJNA884180	SRX17748681	2.06734	var. secalinum Yablochny	parenchyma		Par_S1_rep4	Biological replicate 4
PRJNA884180	SRX17748898	0.876528	var. secalinum Yablochny	vascular bundle		Vas_S1_rep1	Biological replicate 1
PRJNA884180	SRX17748899	1.487313	var. secalinum Yablochny	vascular bundle		Vas_S1_rep2	Biological replicate 2
PRJNA884180	SRX17748900	0.736488	var. secalinum Yablochny	vascular bundle		Vas_S1_rep3	Biological replicate 3
PRJNA884180	SRX17748901	0.607135	var. secalinum Yablochny	vascular bundle		Vas_S1_rep4	Biological replicate 4
PRJNA884180	SRX17749129	2.572169	var. secalinum Yablochny	part of the celery petiole without collenchyma strands		Collenchyma-free_S1_rep1	Biological replicate 1
PRJNA884180	SRX17749130	2.121229	var. secalinum Yablochny	part of the celery petiole without collenchyma strands		Collenchyma-free_S1_rep2	Biological replicate 2
PRJNA884180	SRX17749131	0.931491	var. secalinum Yablochny	part of the celery petiole without collenchyma strands		Collenchyma-free_S1_rep3	Biological replicate 3
PRJNA884180	SRX17749132	2.101686	var. secalinum Yablochny	part of the celery petiole without collenchyma strands		Collenchyma-free_S1_rep4	Biological replicate 4
PRJNA1124269	SRX24936411	0		leaf		CK1	replicate=biological replicate1
PRJNA1124269	SRX24936412	0		leaf		CK2	replicate=biological replicate2
PRJNA1124269	SRX24936413	0		leaf		CK3	replicate=biological replicate3
PRJNA1124269	SRX24936414	0.135598		leaf		D1	replicate=biological replicate1
PRJNA1124269	SRX24936415	0.355265		leaf		D2	replicate=biological replicate2
PRJNA1124269	SRX24936416	0.36673		leaf		D3	replicate=biological replicate3
PRJNA1124269	SRX24936417	0.360781		leaf		MD1	replicate=biological replicate1
PRJNA1124269	SRX24936418	0.223157		leaf		MD2	replicate=biological replicate2
PRJNA1124269	SRX24936419	0.100436		leaf		MD3	replicate=biological replicate3
PRJNA387092	SRX2833309	0.900819	shanghaihuangxin	leaf	leaves between 0.5 and 1 cm in breadth, folded;	stage 2
PRJNA387092	SRX2833321	0.532648	shanghaihuangxin	leaf	leaves between 2and 2.5 cm in breadth, nearly unfolded, with clear stem exten-sion	stage 5
PRJNA387092	SRX2833323	0.615594	shanghaihuangxin	leaf	leaves >3 cm, unfolded, with clearstem extension	stage 7
PRJNA543957	SRX5879598	0.1075	Zhangzhou lvqing	stem		Se3	100 ppm Na2SeO4
PRJNA543957	SRX5879599	0.651801	Zhangzhou lvqing	stem		Se2	100 ppm Na2SeO4
PRJNA543957	SRX5879600	0	Zhangzhou lvqing	stem		Mock2	mock
PRJNA543957	SRX5879601	0.291144	Zhangzhou lvqing	stem		Mock1	mock
PRJNA543957	SRX5879602	0.356702	Zhangzhou lvqing	stem		Se1	100 ppm Na2SeO4
PRJNA543957	SRX5879603	0.436641	Zhangzhou lvqing	stem		Mock3	mock
PRJNA609149	SRX7815917	1.512773	Jinnan Shiqin	flower bud	early flower bud	early flower bud
PRJNA609149	SRX7815918	0.921095	Jinnan Shiqin	flower bud	middle flower bud	middle flower bud
PRJNA609149	SRX7815919	0.621624	Jinnan Shiqin	flower bud	early flowering period	early flowering period

Network

🔍 Co-expression Network

🔍 Protein-Protein Interaction Network

Orthology

Family	Species	Count	Orthologous Genes
Acanthaceae	Avicennia marina	1	jg1471
Anacardiaceae	Pistacia vera	1	pistato.v30168650
Apiaceae	Apium graveolens	4	Ag10G02206, Ag11G04546, Ag2G00801, Ag9G01854
Arecaceae	Cocos nucifera	1	scaffold000460G000040
Arecaceae	Phoenix dactylifera	1	gene-LOC103697818
Asparagaceae	Asparagus officinalis	1	AsparagusV1_Unassigned.288.V1.1
Asteraceae	Flaveria trinervia	3	Ftri15G18457, Ftri17G12801, Ftri6G19474
Casuarinaceae	Casuarina equisetifolia	1	Ceq05G0955
Casuarinaceae	Casuarina glauca	1	Cgl05G0954
Plantaginaceae	Plantago ovata	1	Pov_00000158
Rhizophoraceae	Bruguiera sexangula	1	evm.TU.Scaffold_18_RagTag.210
Rhizophoraceae	Carallia pectinifolia	2	nbisL1-mrna-28373, nbisL1-mrna-7221
Rhizophoraceae	Ceriops tagal	1	nbisL1-mrna-13228
Rhizophoraceae	Ceriops zippeliana	3	nbisL1-mrna-7688, nbisL1-mrna-7689, nbisL1-mrna-7690
Rhizophoraceae	Kandelia candel	1	evm.TU.utg000023l.272
Rhizophoraceae	Kandelia obovata	1	Maker00018787
Salicaceae	Populus euphratica	2	populus_peu04171, populus_peu12000
Solanaceae	Lycium barbarum	1	gene-LOC132644359
Solanaceae	Solanum pennellii	1	gene-LOC107025325