Basic Information
Locus ID:
Ag11G04497
Species & Taxonomic ID:
Apium graveolens & 4045
Genome Assembly:
GCA_009905375.1
Description:
psbP domain-containing protein 5
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr11 | 180052572 | 180058991 | + | Ag11G04497 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.80 | 33,948.21 Da | 55.73 | 76.46 | -0.26 |
Protein Domain:
Gene Ontology
Biological Process:
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G11450.1 | Mog1/PsbP/DUF1795-like photosystem II reaction center PsbP family protein. | 0 |
| RefSeq | XP_017232309.1 | PREDICTED: psbP domain-containing protein 5, chloroplastic [Daucus carota subsp. sativus] | 0 |
| P82715 | PsbP domain-containing protein 5, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=PPD5 PE=1 SV=3 | 0 | |
| TrEMBL | A0A161X359 | 23 kDa subunit of oxygen evolving system of photosystem II OS=Daucus carota subsp. sativus OX=79200 GN=DCAR_006262 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| PRJNA723697 | SRX10692252 | 2.911082 | Shengqin NO.2 | seed | S1-1 | S1-1 | initial formation stage (S1) |
| PRJNA723697 | SRX10692254 | 4.332355 | Shengqin NO.2 | seed | S1-3 | S1-3 | initial formation stage (S1) |
| PRJNA723697 | SRX10692255 | 2.411609 | Shengqin NO.2 | seed | S3-1 | S3-1 | middle development stage (S3) |
| PRJNA723697 | SRX10692256 | 3.425647 | Shengqin NO.2 | seed | S3-2 | S3-2 | middle development stage (S3) |
| PRJNA723697 | SRX10692257 | 3.183296 | Shengqin NO.2 | seed | S3-3 | S3-3 | middle development stage (S3) |
| PRJNA723697 | SRX10692258 | 1.746628 | Shengqin NO.2 | seed | S5-1 | S5-1 | maturation stage (S5) |
| PRJNA723697 | SRX10692259 | 1.270394 | Shengqin NO.2 | seed | S5-2 | S5-2 | maturation stage (S5) |
| PRJNA723697 | SRX10692260 | 1.245491 | Shengqin NO.2 | seed | S5-3 | S5-3 | maturation stage (S5) |
| PRJNA884666 | SRX17729272 | 27.614197 | celery | anther | W99A-r1 | male sterile line | |
| PRJNA884666 | SRX17729273 | 25.561361 | celery | anther | W99A-r2 | male sterile line | |
| PRJNA884666 | SRX17729274 | 26.521536 | celery | anther | W99A-r3 | male sterile line | |
| PRJNA884666 | SRX17729275 | 21.80303 | celery | anther | W99B-r1 | maintainer line | |
| PRJNA884666 | SRX17729276 | 26.249741 | celery | anther | W99B-r2 | maintainer line | |
| PRJNA884666 | SRX17729277 | 26.296518 | celery | anther | W99B-r3 | maintainer line | |
| PRJNA884180 | SRX17743889 | 24.708168 | var. secalinum Yablochny | collenchyma | Col_S1_rep1-1 | ||
| PRJNA884180 | SRX17748056 | 22.347349 | var. secalinum Yablochny | collenchyma | Col_S1_rep3 | biological replicate 3 | |
| PRJNA884180 | SRX17748057 | 22.172188 | var. secalinum Yablochny | collenchyma | Col_S1_rep4 | biological replicate 4 | |
| PRJNA884180 | SRX17748678 | 34.15337 | var. secalinum Yablochny | parenchyma | Par_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17748679 | 40.465183 | var. secalinum Yablochny | parenchyma | Par_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17748680 | 23.079605 | var. secalinum Yablochny | parenchyma | Par_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17748681 | 20.046564 | var. secalinum Yablochny | parenchyma | Par_S1_rep4 | Biological replicate 4 | |
| PRJNA884180 | SRX17748898 | 15.903833 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17748899 | 17.955231 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17748900 | 22.324005 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17748901 | 21.496029 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep4 | Biological replicate 4 | |
| PRJNA884180 | SRX17749129 | 34.869373 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17749130 | 35.620567 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17749131 | 43.642914 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17749132 | 31.669344 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep4 | Biological replicate 4 | |
| PRJNA1124269 | SRX24936411 | 10.790135 | leaf | CK1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936412 | 19.141325 | leaf | CK2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936413 | 15.495581 | leaf | CK3 | replicate=biological replicate3 | ||
| PRJNA1124269 | SRX24936414 | 3.68745 | leaf | D1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936415 | 7.142087 | leaf | D2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936416 | 4.705102 | leaf | D3 | replicate=biological replicate3 | ||
| PRJNA1124269 | SRX24936417 | 5.462649 | leaf | MD1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936418 | 7.358684 | leaf | MD2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936419 | 5.748038 | leaf | MD3 | replicate=biological replicate3 | ||
| PRJNA387092 | SRX2833309 | 117.382202 | shanghaihuangxin | leaf | leaves between 0.5 and 1 cm in breadth, folded; | stage 2 | |
| PRJNA387092 | SRX2833321 | 62.523212 | shanghaihuangxin | leaf | leaves between 2and 2.5 cm in breadth, nearly unfolded, with clear stem exten-sion | stage 5 | |
| PRJNA387092 | SRX2833323 | 89.357613 | shanghaihuangxin | leaf | leaves >3 cm, unfolded, with clearstem extension | stage 7 | |
| PRJNA543957 | SRX5879598 | 6.194871 | Zhangzhou lvqing | stem | Se3 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879599 | 6.999005 | Zhangzhou lvqing | stem | Se2 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879600 | 7.356682 | Zhangzhou lvqing | stem | Mock2 | mock | |
| PRJNA543957 | SRX5879601 | 7.171932 | Zhangzhou lvqing | stem | Mock1 | mock | |
| PRJNA543957 | SRX5879602 | 5.379368 | Zhangzhou lvqing | stem | Se1 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879603 | 6.971718 | Zhangzhou lvqing | stem | Mock3 | mock | |
| PRJNA609149 | SRX7815917 | 25.886692 | Jinnan Shiqin | flower bud | early flower bud | early flower bud | |
| PRJNA609149 | SRX7815918 | 24.251402 | Jinnan Shiqin | flower bud | middle flower bud | middle flower bud | |
| PRJNA609149 | SRX7815919 | 24.890896 | Jinnan Shiqin | flower bud | early flowering period | early flowering period |
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Acanthaceae | Avicennia marina | 1 | jg36769 |
| Aizoaceae | Mesembryanthemum crystallinum | 1 | gene_17836 |
| Amaranthaceae | Atriplex hortensis | 1 | Ah031891 |
| Amaranthaceae | Beta vulgaris | 1 | BVRB_2g043690 |
| Amaranthaceae | Salicornia bigelovii | 2 | Sbi_jg30306, Sbi_jg43725 |
| Amaranthaceae | Salicornia europaea | 1 | Seu_jg18186 |
| Amaranthaceae | Suaeda aralocaspica | 1 | GOSA_00025566 |
| Amaranthaceae | Suaeda glauca | 2 | Sgl65781, Sgl70130 |
| Amaranthaceae | Chenopodium album | 3 | gene:ENSEOMG00000012754, gene:ENSEOMG00000020212 ... |
| Amaranthaceae | Chenopodium quinoa | 2 | CQ.Regalona.r1.2AG0001670, CQ.Regalona.r1.8AG0022990 |
| Anacardiaceae | Pistacia vera | 1 | pistato.v30253080 |
| Apiaceae | Apium graveolens | 1 | Ag11G04497 |
| Arecaceae | Cocos nucifera | 1 | COCNU_14G000890 |
| Arecaceae | Phoenix dactylifera | 1 | gene-LOC103720913 |
| Asparagaceae | Asparagus officinalis | 1 | AsparagusV1_03.3024.V1.1 |
| Asteraceae | Flaveria trinervia | 1 | Ftri2G27334 |
| Brassicaceae | Arabidopsis thaliana | 1 | AT5G11450.1 |
| Brassicaceae | Eutrema salsugineum | 1 | Thhalv10014231m.g.v1.0 |
| Brassicaceae | Schrenkiella parvula | 1 | Sp6g32150.v2.2 |
| Brassicaceae | Brassica nigra | 1 | BniB02g050620.2N |
| Casuarinaceae | Casuarina equisetifolia | 1 | Ceq04G2259 |
| Casuarinaceae | Casuarina glauca | 1 | Cgl04G2457 |
| Cymodoceaceae | Cymodocea nodosa | 1 | gene.Cymno16g00450 |
| Dunaliellaceae | Dunaliella salina | 1 | Dusal.0641s00011.v1.0 |
| Hydrocharitaceae | Thalassia testudinum | 1 | gene.Thate03g19990 |
| Nitrariaceae | Nitraria sibirica | 1 | evm.TU.LG07.1381 |
| Plantaginaceae | Plantago ovata | 1 | Pov_00013687 |
| Plumbaginaceae | Limonium bicolor | 1 | Lb1G04932 |
| Poaceae | Echinochloa crus-galli | 3 | AH02.2345, BH02.2451, CH02.2629 |
| Poaceae | Eleusine coracana subsp. coracana | 2 | gene-QOZ80_1AG0024710, gene-QOZ80_1BG0075330 |
| Poaceae | Lolium multiflorum | 1 | gene-QYE76_053852 |
| Poaceae | Oryza coarctata | 2 | Oco01G014640, Oco02G014970 |
| Poaceae | Oryza sativa | 1 | LOC_Os01g43070.1 |
| Poaceae | Paspalum vaginatum | 1 | gene-BS78_03G196200 |
| Poaceae | Puccinellia tenuiflora | 1 | Pt_Chr0603361 |
| Poaceae | Sporobolus alterniflorus | 3 | Chr02G015290, Chr03G011160, Chr08G011360 |
| Poaceae | Thinopyrum elongatum | 1 | Tel7E01G864800 |
| Poaceae | Triticum dicoccoides | 2 | gene_TRIDC7AG070660, gene_TRIDC7BG065200 |
| Poaceae | Triticum aestivum | 3 | TraesCS7A02G504900.2, TraesCS7B02G412200.2 ... |
| Poaceae | Zea mays | 2 | Zm00001eb159760_P002, Zm00001eb358300_P001 |
| Poaceae | Zoysia japonica | 1 | nbis-gene-29230 |
| Poaceae | Zoysia macrostachya | 1 | Zma_g10660 |
| Portulacaceae | Portulaca oleracea | 2 | evm.TU.LG16.1441, evm.TU.LG26.228 |
| Posidoniaceae | Posidonia oceanica | 1 | gene.Posoc09g11650 |
| Rhizophoraceae | Bruguiera sexangula | 2 | evm.TU.Scaffold_10_RagTag.803, evm.TU.Scaffold_10_RagTag.804 |
| Rhizophoraceae | Carallia pectinifolia | 1 | nbisL1-mrna-13681 |
| Rhizophoraceae | Ceriops tagal | 1 | nbisL1-mrna-11904 |
| Rhizophoraceae | Ceriops zippeliana | 1 | nbisL1-mrna-9050 |
| Rhizophoraceae | Kandelia candel | 1 | evm.TU.utg000004l.129 |
| Rhizophoraceae | Kandelia obovata | 1 | Maker00003888 |
| Rhizophoraceae | Rhizophora apiculata | 1 | nbisL1-mrna-3817 |
| Rhizophoraceae | Rhizophora mangle | 1 | nbisL1-mrna-7913 |
| Salicaceae | Populus euphratica | 1 | populus_peu12819 |
| Solanaceae | Lycium barbarum | 1 | gene-LOC132635704 |
| Solanaceae | Solanum chilense | 1 | SOLCI002940700 |
| Solanaceae | Solanum pennellii | 1 | gene-LOC107028820 |
| Tamaricaceae | Reaumuria soongarica | 1 | gene_17242 |
| Tamaricaceae | Tamarix chinensis | 1 | TC02G0427 |
| Zosteraceae | Zostera marina | 1 | Zosma01g05950.v3.1 |