halophFGD

Basic Information

Locus ID: Ag11G04493

Species & Taxonomic ID: Apium graveolens & 4045

Genome Assembly: GCA_009905375.1

Description: BEST Arabidopsis thaliana protein match is

Maps and Mapping Data

Chromosome	Start	End	Strand	ID
chr11	179962617	179972224	+	Ag11G04493

Protein Data

Protein Properties:

Theoretical pI	Molecular Weight	Instability Index	Aliphatic Index	GRAVY
5.30	113,240.62 Da	47.66	65.96	-0.95

Protein Domain:

Category	ID	Description	Start	End	Evalue/Score	InterPro ID
CDD	cd04508	TUDOR	797	837	0.00255416	IPR002999
SUPERFAMILY	SSF63748	Tudor/PWWP/MBT	794	836	6.32E-7	-
SUPERFAMILY	SSF48371	ARM repeat	21	232	4.43E-8	IPR016024
Gene3D	G3DSA:2.30.30.140	-	792	840	2.6E-10	-
SMART	SM00333	TUDOR_7	792	850	9.5E-4	IPR002999
MobiDBLite	mobidb-lite	consensus disorder prediction	460	479	-	-
MobiDBLite	mobidb-lite	consensus disorder prediction	672	700	-	-
MobiDBLite	mobidb-lite	consensus disorder prediction	452	786	-	-
MobiDBLite	mobidb-lite	consensus disorder prediction	625	642	-	-
MobiDBLite	mobidb-lite	consensus disorder prediction	411	428	-	-
MobiDBLite	mobidb-lite	consensus disorder prediction	311	345	-	-
MobiDBLite	mobidb-lite	consensus disorder prediction	850	1038	-	-
MobiDBLite	mobidb-lite	consensus disorder prediction	891	935	-	-
MobiDBLite	mobidb-lite	consensus disorder prediction	1008	1023	-	-
MobiDBLite	mobidb-lite	consensus disorder prediction	498	521	-	-
MobiDBLite	mobidb-lite	consensus disorder prediction	267	438	-	-
MobiDBLite	mobidb-lite	consensus disorder prediction	741	771	-	-
MobiDBLite	mobidb-lite	consensus disorder prediction	534	577	-	-
MobiDBLite	mobidb-lite	consensus disorder prediction	965	992	-	-
MobiDBLite	mobidb-lite	consensus disorder prediction	586	603	-	-
MobiDBLite	mobidb-lite	consensus disorder prediction	942	964	-	-
MobiDBLite	mobidb-lite	consensus disorder prediction	701	729	-	-
MobiDBLite	mobidb-lite	consensus disorder prediction	267	290	-	-
MobiDBLite	mobidb-lite	consensus disorder prediction	353	404	-	-
Coils	Coil	Coil	16	43	-	-

Best hit

Source	Best Hit ID	Description
TAIR	AT4G31880.2
RefSeq	XP_017234806.1	PREDICTED: transcriptional regulator ATRX-like [Daucus carota subsp. sativus]
Swiss-Prot	Q8GUP3	Sister chromatid cohesion protein PDS5 homolog C OS=Arabidopsis thaliana OX=3702 GN=PDS5C PE=1 SV=1
TrEMBL	A0A166DMF5	Tudor domain-containing protein OS=Daucus carota subsp. sativus OX=79200 GN=DCAR_006266 PE=4 SV=1

Expression

BioProject	Accession	TPM	Cultivar	Tissue	Development Stage	Sample Name	Description
PRJNA723697	SRX10692252	50.888004	Shengqin NO.2	seed	S1-1	S1-1	initial formation stage (S1)
PRJNA723697	SRX10692254	37.805843	Shengqin NO.2	seed	S1-3	S1-3	initial formation stage (S1)
PRJNA723697	SRX10692255	41.090752	Shengqin NO.2	seed	S3-1	S3-1	middle development stage (S3)
PRJNA723697	SRX10692256	40.406971	Shengqin NO.2	seed	S3-2	S3-2	middle development stage (S3)
PRJNA723697	SRX10692257	41.248051	Shengqin NO.2	seed	S3-3	S3-3	middle development stage (S3)
PRJNA723697	SRX10692258	48.883163	Shengqin NO.2	seed	S5-1	S5-1	maturation stage (S5)
PRJNA723697	SRX10692259	43.244213	Shengqin NO.2	seed	S5-2	S5-2	maturation stage (S5)
PRJNA723697	SRX10692260	30.470243	Shengqin NO.2	seed	S5-3	S5-3	maturation stage (S5)
PRJNA884666	SRX17729272	98.235893	celery	anther		W99A-r1	male sterile lineÂ
PRJNA884666	SRX17729273	98.612816	celery	anther		W99A-r2	male sterile lineÂ
PRJNA884666	SRX17729274	103.008797	celery	anther		W99A-r3	male sterile lineÂ
PRJNA884666	SRX17729275	92.530579	celery	anther		W99B-r1	maintainer line
PRJNA884666	SRX17729276	91.630768	celery	anther		W99B-r2	maintainer line
PRJNA884666	SRX17729277	72.265251	celery	anther		W99B-r3	maintainer line
PRJNA884180	SRX17743889	33.155403	var. secalinum Yablochny	collenchyma		Col_S1_rep1-1
PRJNA884180	SRX17748056	37.074825	var. secalinum Yablochny	collenchyma		Col_S1_rep3	biological replicate 3
PRJNA884180	SRX17748057	35.371239	var. secalinum Yablochny	collenchyma		Col_S1_rep4	biological replicate 4
PRJNA884180	SRX17748678	44.551052	var. secalinum Yablochny	parenchyma		Par_S1_rep1	Biological replicate 1
PRJNA884180	SRX17748679	38.792427	var. secalinum Yablochny	parenchyma		Par_S1_rep2	Biological replicate 2
PRJNA884180	SRX17748680	38.958252	var. secalinum Yablochny	parenchyma		Par_S1_rep3	Biological replicate 3
PRJNA884180	SRX17748681	46.009483	var. secalinum Yablochny	parenchyma		Par_S1_rep4	Biological replicate 4
PRJNA884180	SRX17748898	47.282383	var. secalinum Yablochny	vascular bundle		Vas_S1_rep1	Biological replicate 1
PRJNA884180	SRX17748899	47.057056	var. secalinum Yablochny	vascular bundle		Vas_S1_rep2	Biological replicate 2
PRJNA884180	SRX17748900	47.79958	var. secalinum Yablochny	vascular bundle		Vas_S1_rep3	Biological replicate 3
PRJNA884180	SRX17748901	51.275345	var. secalinum Yablochny	vascular bundle		Vas_S1_rep4	Biological replicate 4
PRJNA884180	SRX17749129	59.895004	var. secalinum Yablochny	part of the celery petiole without collenchyma strands		Collenchyma-free_S1_rep1	Biological replicate 1
PRJNA884180	SRX17749130	46.004173	var. secalinum Yablochny	part of the celery petiole without collenchyma strands		Collenchyma-free_S1_rep2	Biological replicate 2
PRJNA884180	SRX17749131	47.918526	var. secalinum Yablochny	part of the celery petiole without collenchyma strands		Collenchyma-free_S1_rep3	Biological replicate 3
PRJNA884180	SRX17749132	57.489075	var. secalinum Yablochny	part of the celery petiole without collenchyma strands		Collenchyma-free_S1_rep4	Biological replicate 4
PRJNA1124269	SRX24936411	7.297694		leaf		CK1	replicate=biological replicate1
PRJNA1124269	SRX24936412	16.267712		leaf		CK2	replicate=biological replicate2
PRJNA1124269	SRX24936413	9.196344		leaf		CK3	replicate=biological replicate3
PRJNA1124269	SRX24936414	20.232077		leaf		D1	replicate=biological replicate1
PRJNA1124269	SRX24936415	15.816932		leaf		D2	replicate=biological replicate2
PRJNA1124269	SRX24936416	22.018764		leaf		D3	replicate=biological replicate3
PRJNA1124269	SRX24936417	12.414201		leaf		MD1	replicate=biological replicate1
PRJNA1124269	SRX24936418	9.046947		leaf		MD2	replicate=biological replicate2
PRJNA1124269	SRX24936419	9.416305		leaf		MD3	replicate=biological replicate3
PRJNA387092	SRX2833309	44.465218	shanghaihuangxin	leaf	leaves between 0.5 and 1 cm in breadth, folded;	stage 2
PRJNA387092	SRX2833321	31.045757	shanghaihuangxin	leaf	leaves between 2and 2.5 cm in breadth, nearly unfolded, with clear stem exten-sion	stage 5
PRJNA387092	SRX2833323	15.691643	shanghaihuangxin	leaf	leaves >3 cm, unfolded, with clearstem extension	stage 7
PRJNA543957	SRX5879598	13.358066	Zhangzhou lvqing	stem		Se3	100 ppm Na2SeO4
PRJNA543957	SRX5879599	28.637171	Zhangzhou lvqing	stem		Se2	100 ppm Na2SeO4
PRJNA543957	SRX5879600	72.504517	Zhangzhou lvqing	stem		Mock2	mock
PRJNA543957	SRX5879601	62.507183	Zhangzhou lvqing	stem		Mock1	mock
PRJNA543957	SRX5879602	21.735575	Zhangzhou lvqing	stem		Se1	100 ppm Na2SeO4
PRJNA543957	SRX5879603	49.18895	Zhangzhou lvqing	stem		Mock3	mock
PRJNA609149	SRX7815917	57.229454	Jinnan Shiqin	flower bud	early flower bud	early flower bud
PRJNA609149	SRX7815918	58.458981	Jinnan Shiqin	flower bud	middle flower bud	middle flower bud
PRJNA609149	SRX7815919	51.108932	Jinnan Shiqin	flower bud	early flowering period	early flowering period

Network

🔍 Co-expression Network

🔍 Protein-Protein Interaction Network

Orthology

Family	Species	Count	Orthologous Genes
Acanthaceae	Avicennia marina	5	jg13469, jg18308, jg24038, jg27134, jg36564
Aizoaceae	Mesembryanthemum crystallinum	2	gene_26270, gene_8191
Amaranthaceae	Atriplex hortensis	2	Ah009214, Ah034859
Amaranthaceae	Beta vulgaris	2	BVRB_2g031360, BVRB_9g223100
Amaranthaceae	Salicornia bigelovii	7	Sbi_jg11690, Sbi_jg21058, Sbi_jg22739, Sbi_jg42119 ... Sbi_jg42120, Sbi_jg44693, Sbi_jg46711
Amaranthaceae	Salicornia europaea	3	Seu_jg16614, Seu_jg20938, Seu_jg27402
Amaranthaceae	Suaeda aralocaspica	5	GOSA_00005084, GOSA_00018267, GOSA_00018269, GOSA_00018270 ... GOSA_00018272
Amaranthaceae	Suaeda glauca	5	Sgl55357, Sgl60618, Sgl60704, Sgl62411, Sgl66960
Amaranthaceae	Chenopodium album	6	gene:ENSEOMG00000017363, gene:ENSEOMG00000019114 ... gene:ENSEOMG00000023791, gene:ENSEOMG00000024921, gene:ENSEOMG00000039337, gene:ENSEOMG00000051628
Amaranthaceae	Chenopodium quinoa	4	CQ.Regalona.r1.1BG0022000, CQ.Regalona.r1.2AG0023810 ... CQ.Regalona.r1.7BG0000100, CQ.Regalona.r1.9AG0024320
Anacardiaceae	Pistacia vera	2	pistato.v30129990, pistato.v30250860
Apiaceae	Apium graveolens	7	Ag11G04493, Ag4G00082, Ag5G00176, Ag6G02420, Ag7G01896 ... Ag8G02082, Ag9G01196
Arecaceae	Cocos nucifera	2	COCNU_01G005200, COCNU_11G011990
Arecaceae	Phoenix dactylifera	3	gene-LOC103710418, gene-LOC103714235, gene-LOC113462467
Asparagaceae	Asparagus officinalis	1	AsparagusV1_08.1855.V1.1
Asteraceae	Flaveria trinervia	5	Ftri13G09438, Ftri14G32204, Ftri18G28033, Ftri1G09744 ... Ftri7G06025
Brassicaceae	Arabidopsis thaliana	3	AT1G15940.1, AT1G80810.2, AT4G31880.1
Brassicaceae	Eutrema salsugineum	3	Thhalv10006733m.g.v1.0, Thhalv10018162m.g.v1.0 ... Thhalv10024366m.g.v1.0
Brassicaceae	Schrenkiella parvula	4	Sp1g14250.v2.2, Sp5g22150.v2.2, Sp5g34950.v2.2 ... Sp7g29700.v2.2
Brassicaceae	Brassica nigra	7	BniB02g085620.2N, BniB03g006560.2N, BniB03g026620.2N ... BniB05g006130.2N, BniB06g041310.2N, BniB06g051250.2N, BniB06g068160.2N
Casuarinaceae	Casuarina equisetifolia	2	Ceq02G0403, Ceq04G2420
Casuarinaceae	Casuarina glauca	2	Cgl02G0428, Cgl04G2624
Cymodoceaceae	Cymodocea nodosa	2	gene.Cymno02g05230, gene.Cymno06g07760
Hydrocharitaceae	Thalassia testudinum	3	gene.Thate05g06230, gene.Thate05g06250, gene.Thate07g07700
Malvaceae	Hibiscus hamabo Siebold & Zucc.	1	nbisL1-mrna-320
Nitrariaceae	Nitraria sibirica	2	evm.TU.LG01.805, evm.TU.LG07.1519
Plantaginaceae	Plantago ovata	9	Pov_00004765, Pov_00010802, Pov_00010907, Pov_00011899 ... Pov_00019396, Pov_00020147, Pov_00034210, Pov_00034716, Pov_00041611
Plumbaginaceae	Limonium bicolor	4	Lb1G00078, Lb3G17889, Lb3G18393, Lb4G22655
Poaceae	Echinochloa crus-galli	5	AH07.2581, AH09.1472, BH07.2393, CH07.2467, CH09.1764
Poaceae	Eleusine coracana subsp. coracana	4	gene-QOZ80_2AG0137270, gene-QOZ80_2BG0192870 ... gene-QOZ80_4AG0311680, gene-QOZ80_4BG0342980
Poaceae	Hordeum vulgare	2	HORVU.MOREX.r3.2HG0179330.1, HORVU.MOREX.r3.6HG0593920.1
Poaceae	Lolium multiflorum	1	gene-QYE76_023570
Poaceae	Oryza coarctata	5	Oco03G015180, Oco04G015710, Oco07G009910, Oco08G003150 ... Oco08G009690
Poaceae	Oryza sativa	2	LOC_Os02g39920.1, LOC_Os04g42320.1
Poaceae	Paspalum vaginatum	2	gene-BS78_04G194200, gene-BS78_06G150800
Poaceae	Puccinellia tenuiflora	5	Pt_Chr0203991, Pt_Chr0203993, Pt_Chr0204573, Pt_Chr0204630 ... Pt_Chr0302219
Poaceae	Sporobolus alterniflorus	13	Chr03G008080, Chr06G008440, Chr09G026030, Chr13G007710 ... Chr15G009960, Chr16G008630, Chr16G011930, Chr17G011050, Chr17G011060, Chr23G009470, Chr26G010260, Chr29G007660, Chr29G007680
Poaceae	Thinopyrum elongatum	2	Tel2E01G623500, Tel6E01G426300
Poaceae	Triticum dicoccoides	4	gene_TRIDC2AG051660, gene_TRIDC2BG055000 ... gene_TRIDC6AG034150, gene_TRIDC6BG040720
Poaceae	Triticum aestivum	7	TraesCS2A02G356300.2, TraesCS2A02G517400.1 ... TraesCS2B02G375600.1, TraesCS2D02G355200.2, TraesCS6A02G231400.3, TraesCS6B02G249900.1, TraesCS6D02G203700.3
Poaceae	Zea mays	7	Zm00001eb078170_P001, Zm00001eb184560_P003 ... Zm00001eb203440_P001, Zm00001eb213590_P001, Zm00001eb246990_P002, Zm00001eb422240_P001, Zm00001eb425970_P001
Poaceae	Zoysia japonica	2	nbis-gene-18548, nbis-gene-29669
Poaceae	Zoysia macrostachya	3	Zma_g13882, Zma_g16658, Zma_g21032
Portulacaceae	Portulaca oleracea	6	evm.TU.LG07.1272, evm.TU.LG07.1843, evm.TU.LG07.602 ... evm.TU.LG15.1321, evm.TU.LG15.341, evm.TU.LG22.728
Posidoniaceae	Posidonia oceanica	3	gene.Posoc01g08140, gene.Posoc02g24140, gene.Posoc03g12680
Rhizophoraceae	Bruguiera sexangula	3	evm.TU.Scaffold_10_RagTag.897, evm.TU.Scaffold_11_RagTag.618 ... evm.TU.Scaffold_4_RagTag.1443
Rhizophoraceae	Carallia pectinifolia	5	nbisL1-mrna-13577, nbisL1-mrna-19018, nbisL1-mrna-26284 ... nbisL1-mrna-6706, nbisL1-mrna-9266
Rhizophoraceae	Ceriops tagal	2	nbisL1-mrna-4093, nbisL1-mrna-975
Rhizophoraceae	Ceriops zippeliana	1	nbisL1-mrna-9149
Rhizophoraceae	Kandelia candel	3	evm.TU.utg000004l.204, evm.TU.utg000005l.54 ... evm.TU.utg000008l.781
Rhizophoraceae	Kandelia obovata	3	Maker00001451, Maker00004260, Maker00008799
Rhizophoraceae	Rhizophora apiculata	3	nbisL1-mrna-1006, nbisL1-mrna-2268, nbisL1-mrna-3738
Rhizophoraceae	Rhizophora mangle	2	nbisL1-mrna-7812, nbisL1-mrna-9712
Salicaceae	Populus euphratica	5	populus_peu04093, populus_peu04697, populus_peu05608 ... populus_peu12994, populus_peu34926
Solanaceae	Lycium barbarum	4	gene-LOC132598943, gene-LOC132628439, gene-LOC132633022 ... gene-LOC132643786
Solanaceae	Solanum chilense	5	SOLCI001041300, SOLCI001172100, SOLCI002190800 ... SOLCI006736600, SOLCI006785600
Solanaceae	Solanum pennellii	7	gene-LOC107012099, gene-LOC107012321, gene-LOC107013637 ... gene-LOC107015433, gene-LOC107021116, gene-LOC107023113, gene-LOC114076028
Tamaricaceae	Reaumuria soongarica	2	STRG.1041_chr01_+, gene_6396
Tamaricaceae	Tamarix chinensis	2	TC01G1045, TC10G2409
Zosteraceae	Zostera marina	5	Zosma01g04220.v3.1, Zosma03g06350.v3.1, Zosma05g32680.v3.1 ... Zosma06g14340.v3.1, Zosma154g00110.v3.1