Basic Information
Locus ID:
Ag11G04475
Species & Taxonomic ID:
Apium graveolens & 4045
Genome Assembly:
GCA_009905375.1
Description:
Fanconi Anaemia group E protein FANCE
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr11 | 178920509 | 178922400 | + | Ag11G04475 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.47 | 58,562.40 Da | 54.98 | 103.47 | -0.03 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF11510 | Fanconi Anaemia group E protein FANCE | 311 | 515 | 1.4E-10 | IPR021025 |
| Gene3D | G3DSA:1.25.40.480 | - | 243 | 518 | 2.9E-50 | - |
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT4G29560.1 | 0 | |
| RefSeq | XP_017240850.1 | PREDICTED: uncharacterized protein LOC108213557 [Daucus carota subsp. sativus] | 0 |
| TrEMBL | A0A169WCS7 | FA_FANCE domain-containing protein OS=Daucus carota subsp. sativus OX=79200 GN=DCAR_010680 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| PRJNA723697 | SRX10692252 | 4.127814 | Shengqin NO.2 | seed | S1-1 | S1-1 | initial formation stage (S1) |
| PRJNA723697 | SRX10692254 | 2.399913 | Shengqin NO.2 | seed | S1-3 | S1-3 | initial formation stage (S1) |
| PRJNA723697 | SRX10692255 | 2.129425 | Shengqin NO.2 | seed | S3-1 | S3-1 | middle development stage (S3) |
| PRJNA723697 | SRX10692256 | 2.587485 | Shengqin NO.2 | seed | S3-2 | S3-2 | middle development stage (S3) |
| PRJNA723697 | SRX10692257 | 2.388996 | Shengqin NO.2 | seed | S3-3 | S3-3 | middle development stage (S3) |
| PRJNA723697 | SRX10692258 | 4.217165 | Shengqin NO.2 | seed | S5-1 | S5-1 | maturation stage (S5) |
| PRJNA723697 | SRX10692259 | 3.903339 | Shengqin NO.2 | seed | S5-2 | S5-2 | maturation stage (S5) |
| PRJNA723697 | SRX10692260 | 4.554784 | Shengqin NO.2 | seed | S5-3 | S5-3 | maturation stage (S5) |
| PRJNA884666 | SRX17729272 | 6.726807 | celery | anther | W99A-r1 | male sterile line | |
| PRJNA884666 | SRX17729273 | 6.952785 | celery | anther | W99A-r2 | male sterile line | |
| PRJNA884666 | SRX17729274 | 7.16201 | celery | anther | W99A-r3 | male sterile line | |
| PRJNA884666 | SRX17729275 | 7.277868 | celery | anther | W99B-r1 | maintainer line | |
| PRJNA884666 | SRX17729276 | 6.752751 | celery | anther | W99B-r2 | maintainer line | |
| PRJNA884666 | SRX17729277 | 6.785347 | celery | anther | W99B-r3 | maintainer line | |
| PRJNA884180 | SRX17743889 | 1.30775 | var. secalinum Yablochny | collenchyma | Col_S1_rep1-1 | ||
| PRJNA884180 | SRX17748056 | 1.356518 | var. secalinum Yablochny | collenchyma | Col_S1_rep3 | biological replicate 3 | |
| PRJNA884180 | SRX17748057 | 2.144064 | var. secalinum Yablochny | collenchyma | Col_S1_rep4 | biological replicate 4 | |
| PRJNA884180 | SRX17748678 | 1.228443 | var. secalinum Yablochny | parenchyma | Par_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17748679 | 2.066068 | var. secalinum Yablochny | parenchyma | Par_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17748680 | 2.106598 | var. secalinum Yablochny | parenchyma | Par_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17748681 | 2.014971 | var. secalinum Yablochny | parenchyma | Par_S1_rep4 | Biological replicate 4 | |
| PRJNA884180 | SRX17748898 | 2.782755 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17748899 | 3.867836 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17748900 | 1.793301 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17748901 | 2.324933 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep4 | Biological replicate 4 | |
| PRJNA884180 | SRX17749129 | 2.004616 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17749130 | 2.324819 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17749131 | 1.718548 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17749132 | 1.992613 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep4 | Biological replicate 4 | |
| PRJNA1124269 | SRX24936411 | 2.014631 | leaf | CK1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936412 | 2.90861 | leaf | CK2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936413 | 2.530562 | leaf | CK3 | replicate=biological replicate3 | ||
| PRJNA1124269 | SRX24936414 | 5.966551 | leaf | D1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936415 | 5.284935 | leaf | D2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936416 | 5.981143 | leaf | D3 | replicate=biological replicate3 | ||
| PRJNA1124269 | SRX24936417 | 3.058156 | leaf | MD1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936418 | 3.898178 | leaf | MD2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936419 | 3.397249 | leaf | MD3 | replicate=biological replicate3 | ||
| PRJNA387092 | SRX2833309 | 2.094281 | shanghaihuangxin | leaf | leaves between 0.5 and 1 cm in breadth, folded; | stage 2 | |
| PRJNA387092 | SRX2833321 | 2.493988 | shanghaihuangxin | leaf | leaves between 2and 2.5 cm in breadth, nearly unfolded, with clear stem exten-sion | stage 5 | |
| PRJNA387092 | SRX2833323 | 1.718724 | shanghaihuangxin | leaf | leaves >3 cm, unfolded, with clearstem extension | stage 7 | |
| PRJNA543957 | SRX5879598 | 1.027475 | Zhangzhou lvqing | stem | Se3 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879599 | 1.839487 | Zhangzhou lvqing | stem | Se2 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879600 | 3.086237 | Zhangzhou lvqing | stem | Mock2 | mock | |
| PRJNA543957 | SRX5879601 | 3.006768 | Zhangzhou lvqing | stem | Mock1 | mock | |
| PRJNA543957 | SRX5879602 | 0.936189 | Zhangzhou lvqing | stem | Se1 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879603 | 3.219906 | Zhangzhou lvqing | stem | Mock3 | mock | |
| PRJNA609149 | SRX7815917 | 5.585736 | Jinnan Shiqin | flower bud | early flower bud | early flower bud | |
| PRJNA609149 | SRX7815918 | 4.556684 | Jinnan Shiqin | flower bud | middle flower bud | middle flower bud | |
| PRJNA609149 | SRX7815919 | 4.656537 | Jinnan Shiqin | flower bud | early flowering period | early flowering period |
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Acanthaceae | Avicennia marina | 1 | jg15441 |
| Anacardiaceae | Pistacia vera | 1 | pistato.v30258070 |
| Apiaceae | Apium graveolens | 2 | Ag11G04475, Ag6G02195 |
| Arecaceae | Cocos nucifera | 1 | COCNU_02G001220 |
| Arecaceae | Phoenix dactylifera | 1 | gene-LOC103709583 |
| Asparagaceae | Asparagus officinalis | 1 | AsparagusV1_01.2318.V1.1 |
| Asteraceae | Flaveria trinervia | 1 | Ftri14G18887 |
| Brassicaceae | Arabidopsis thaliana | 1 | AT4G29560.1 |
| Brassicaceae | Eutrema salsugineum | 1 | Thhalv10027131m.g.v1.0 |
| Brassicaceae | Brassica nigra | 1 | BniB03g011300.2N |
| Casuarinaceae | Casuarina equisetifolia | 1 | Ceq06G0870 |
| Casuarinaceae | Casuarina glauca | 1 | Cgl06G0898 |
| Cymodoceaceae | Cymodocea nodosa | 1 | gene.Cymno16g01170 |
| Hydrocharitaceae | Thalassia testudinum | 1 | gene.Thate09g14380 |
| Nitrariaceae | Nitraria sibirica | 1 | evm.TU.LG07.1221 |
| Plantaginaceae | Plantago ovata | 1 | Pov_00002909 |
| Plumbaginaceae | Limonium bicolor | 1 | Lb3G16999 |
| Poaceae | Echinochloa crus-galli | 1 | CH06.2137 |
| Poaceae | Eleusine coracana subsp. coracana | 2 | gene-QOZ80_6AG0543490, gene-QOZ80_6BG0496730 |
| Poaceae | Hordeum vulgare | 1 | HORVU.MOREX.r3.7HG0716390.1.CDS1 |
| Poaceae | Lolium multiflorum | 1 | gene-QYE76_034588 |
| Poaceae | Oryza coarctata | 2 | Oco11G011590, Oco12G011710 |
| Poaceae | Oryza sativa | 1 | LOC_Os06g37570.1 |
| Poaceae | Paspalum vaginatum | 1 | gene-BS78_10G173200 |
| Poaceae | Sporobolus alterniflorus | 3 | Chr02G029300, Chr05G006960, Chr10G016820 |
| Poaceae | Thinopyrum elongatum | 1 | Tel7E01G615600 |
| Poaceae | Triticum dicoccoides | 2 | gene_TRIDC7AG050820, gene_TRIDC7BG043060 |
| Poaceae | Triticum aestivum | 3 | TraesCS7A02G363800.1.cds1, TraesCS7B02G264100.1.cds1 ... |
| Poaceae | Zea mays | 1 | Zm00001eb385220_P001 |
| Poaceae | Zoysia macrostachya | 1 | Zma_g30731 |
| Posidoniaceae | Posidonia oceanica | 1 | gene.Posoc09g10230 |
| Rhizophoraceae | Bruguiera sexangula | 1 | evm.TU.Scaffold_10_RagTag.516 |
| Rhizophoraceae | Carallia pectinifolia | 1 | nbisL1-mrna-13004 |
| Rhizophoraceae | Ceriops tagal | 1 | nbisL1-mrna-12765 |
| Rhizophoraceae | Ceriops zippeliana | 1 | nbisL1-mrna-16906 |
| Rhizophoraceae | Kandelia candel | 1 | evm.TU.utg000033l.358 |
| Rhizophoraceae | Kandelia obovata | 1 | Maker00014787 |
| Rhizophoraceae | Rhizophora apiculata | 1 | nbisL1-mrna-4023 |
| Rhizophoraceae | Rhizophora mangle | 1 | nbisL1-mrna-8190 |
| Salicaceae | Populus euphratica | 1 | populus_peu37004 |
| Solanaceae | Lycium barbarum | 1 | gene-LOC132616729 |
| Solanaceae | Solanum chilense | 1 | SOLCI005389400 |
| Solanaceae | Solanum pennellii | 1 | gene-LOC107024458 |
| Tamaricaceae | Reaumuria soongarica | 1 | gene_6515 |
| Tamaricaceae | Tamarix chinensis | 1 | TC10G1725 |