halophFGD

Basic Information

Locus ID: Ag11G04428

Species & Taxonomic ID: Apium graveolens & 4045

Genome Assembly: GCA_009905375.1

Description: serine threonine-protein kinase

Maps and Mapping Data

Chromosome	Start	End	Strand	ID
chr11	175796758	175799980	+	Ag11G04428

Protein Data

Protein Properties:

Theoretical pI	Molecular Weight	Instability Index	Aliphatic Index	GRAVY
5.73	89,252.21 Da	35.08	78.72	-0.16

Protein Domain:

Category	ID	Description	Start	End	Evalue/Score	InterPro ID
CDD	cd00028	B_lectin	46	157	1.61918E-22	IPR001480
Pfam	PF00069	Protein kinase domain	496	759	5.5E-50	IPR000719
Pfam	PF01453	D-mannose binding lectin	85	167	1.5E-17	IPR001480
SUPERFAMILY	SSF56112	Protein kinase-like (PK-like)	471	763	8.77E-80	IPR011009
SUPERFAMILY	SSF51110	alpha-D-mannose-specific plant lectins	83	210	2.09E-24	IPR036426
Gene3D	G3DSA:1.10.510.10	Transferase(Phosphotransferase) domain 1	567	767	6.4E-63	-
Gene3D	G3DSA:2.90.10.10	-	46	156	1.3E-16	IPR036426
Gene3D	G3DSA:3.30.200.20	Phosphorylase Kinase; domain 1	456	566	6.1E-31	-
SMART	SM00220	serkin_6	492	761	1.7E-32	IPR000719
SMART	SM00108	blect_4	44	157	5.4E-21	IPR001480
PIRSF	PIRSF000641	SRK	8	811	9.5E-212	IPR024171
ProSiteProfiles	PS50011	Protein kinase domain profile.	492	764	37.120842	IPR000719
ProSiteProfiles	PS50927	Bulb-type lectin domain profile.	37	155	13.361373	IPR001480
ProSitePatterns	PS00107	Protein kinases ATP-binding region signature.	498	520	-	IPR017441
ProSitePatterns	PS00108	Serine/Threonine protein kinases active-site signature.	612	624	-	IPR008271

Gene Ontology

Biological Process:

GO:0006468 (protein phosphorylation)

Molecular Function:

GO:0004672 (protein kinase activity) GO:0004674 (protein serine/threonine kinase activity) GO:0005524 (ATP binding)

KEGG Pathway

KO Term:

K04733 (interleukin-1 receptor-associated kinase 4 [EC:2.7.11.1])

Pathway:

ko04010 (MAPK signaling pathway) map04010 (MAPK signaling pathway) map04064 (NF-kappa B signaling pathway) map04620 (Toll-like receptor signaling pathway) map04621 (NOD-like receptor signaling pathway) ko04624 (Toll and Imd signaling pathway) map04624 (Toll and Imd signaling pathway)

Best hit

Source	Best Hit ID	Description
TAIR	AT4G32300.1	S-domain-2 5.
RefSeq	XP_017231106.1	PREDICTED: G-type lectin S-receptor-like serine/threonine-protein kinase SD2-5 [Daucus carota subsp. sativus]
Swiss-Prot	Q8RWZ5	G-type lectin S-receptor-like serine/threonine-protein kinase SD2-5 OS=Arabidopsis thaliana OX=3702 GN=SD25 PE=1 SV=1
TrEMBL	A0A166DL17	Receptor-like serine/threonine-protein kinase OS=Daucus carota subsp. sativus OX=79200 GN=DCAR_006216 PE=3 SV=1

Expression

BioProject	Accession	TPM	Cultivar	Tissue	Development Stage	Sample Name	Description
PRJNA723697	SRX10692252	1.050099	Shengqin NO.2	seed	S1-1	S1-1	initial formation stage (S1)
PRJNA723697	SRX10692254	3.179928	Shengqin NO.2	seed	S1-3	S1-3	initial formation stage (S1)
PRJNA723697	SRX10692255	3.987141	Shengqin NO.2	seed	S3-1	S3-1	middle development stage (S3)
PRJNA723697	SRX10692256	3.769865	Shengqin NO.2	seed	S3-2	S3-2	middle development stage (S3)
PRJNA723697	SRX10692257	5.286861	Shengqin NO.2	seed	S3-3	S3-3	middle development stage (S3)
PRJNA723697	SRX10692258	6.200212	Shengqin NO.2	seed	S5-1	S5-1	maturation stage (S5)
PRJNA723697	SRX10692259	6.345429	Shengqin NO.2	seed	S5-2	S5-2	maturation stage (S5)
PRJNA723697	SRX10692260	4.718321	Shengqin NO.2	seed	S5-3	S5-3	maturation stage (S5)
PRJNA884666	SRX17729272	19.393663	celery	anther		W99A-r1	male sterile lineÂ
PRJNA884666	SRX17729273	17.780708	celery	anther		W99A-r2	male sterile lineÂ
PRJNA884666	SRX17729274	20.536318	celery	anther		W99A-r3	male sterile lineÂ
PRJNA884666	SRX17729275	20.656487	celery	anther		W99B-r1	maintainer line
PRJNA884666	SRX17729276	15.789224	celery	anther		W99B-r2	maintainer line
PRJNA884666	SRX17729277	12.539703	celery	anther		W99B-r3	maintainer line
PRJNA884180	SRX17743889	21.546606	var. secalinum Yablochny	collenchyma		Col_S1_rep1-1
PRJNA884180	SRX17748056	16.003935	var. secalinum Yablochny	collenchyma		Col_S1_rep3	biological replicate 3
PRJNA884180	SRX17748057	20.848965	var. secalinum Yablochny	collenchyma		Col_S1_rep4	biological replicate 4
PRJNA884180	SRX17748678	24.677711	var. secalinum Yablochny	parenchyma		Par_S1_rep1	Biological replicate 1
PRJNA884180	SRX17748679	14.376503	var. secalinum Yablochny	parenchyma		Par_S1_rep2	Biological replicate 2
PRJNA884180	SRX17748680	18.512419	var. secalinum Yablochny	parenchyma		Par_S1_rep3	Biological replicate 3
PRJNA884180	SRX17748681	17.354607	var. secalinum Yablochny	parenchyma		Par_S1_rep4	Biological replicate 4
PRJNA884180	SRX17748898	4.823838	var. secalinum Yablochny	vascular bundle		Vas_S1_rep1	Biological replicate 1
PRJNA884180	SRX17748899	6.336699	var. secalinum Yablochny	vascular bundle		Vas_S1_rep2	Biological replicate 2
PRJNA884180	SRX17748900	5.112686	var. secalinum Yablochny	vascular bundle		Vas_S1_rep3	Biological replicate 3
PRJNA884180	SRX17748901	9.441734	var. secalinum Yablochny	vascular bundle		Vas_S1_rep4	Biological replicate 4
PRJNA884180	SRX17749129	11.054845	var. secalinum Yablochny	part of the celery petiole without collenchyma strands		Collenchyma-free_S1_rep1	Biological replicate 1
PRJNA884180	SRX17749130	16.852419	var. secalinum Yablochny	part of the celery petiole without collenchyma strands		Collenchyma-free_S1_rep2	Biological replicate 2
PRJNA884180	SRX17749131	11.488688	var. secalinum Yablochny	part of the celery petiole without collenchyma strands		Collenchyma-free_S1_rep3	Biological replicate 3
PRJNA884180	SRX17749132	15.02306	var. secalinum Yablochny	part of the celery petiole without collenchyma strands		Collenchyma-free_S1_rep4	Biological replicate 4
PRJNA1124269	SRX24936411	2.356776		leaf		CK1	replicate=biological replicate1
PRJNA1124269	SRX24936412	2.484602		leaf		CK2	replicate=biological replicate2
PRJNA1124269	SRX24936413	2.415814		leaf		CK3	replicate=biological replicate3
PRJNA1124269	SRX24936414	6.143522		leaf		D1	replicate=biological replicate1
PRJNA1124269	SRX24936415	3.728513		leaf		D2	replicate=biological replicate2
PRJNA1124269	SRX24936416	5.168326		leaf		D3	replicate=biological replicate3
PRJNA1124269	SRX24936417	4.894554		leaf		MD1	replicate=biological replicate1
PRJNA1124269	SRX24936418	2.696147		leaf		MD2	replicate=biological replicate2
PRJNA1124269	SRX24936419	2.606939		leaf		MD3	replicate=biological replicate3
PRJNA387092	SRX2833309	12.542395	shanghaihuangxin	leaf	leaves between 0.5 and 1 cm in breadth, folded;	stage 2
PRJNA387092	SRX2833321	10.391176	shanghaihuangxin	leaf	leaves between 2and 2.5 cm in breadth, nearly unfolded, with clear stem exten-sion	stage 5
PRJNA387092	SRX2833323	5.668911	shanghaihuangxin	leaf	leaves >3 cm, unfolded, with clearstem extension	stage 7
PRJNA543957	SRX5879598	8.419286	Zhangzhou lvqing	stem		Se3	100 ppm Na2SeO4
PRJNA543957	SRX5879599	22.637608	Zhangzhou lvqing	stem		Se2	100 ppm Na2SeO4
PRJNA543957	SRX5879600	20.113594	Zhangzhou lvqing	stem		Mock2	mock
PRJNA543957	SRX5879601	16.638445	Zhangzhou lvqing	stem		Mock1	mock
PRJNA543957	SRX5879602	7.077005	Zhangzhou lvqing	stem		Se1	100 ppm Na2SeO4
PRJNA543957	SRX5879603	27.52989	Zhangzhou lvqing	stem		Mock3	mock
PRJNA609149	SRX7815917	3.921788	Jinnan Shiqin	flower bud	early flower bud	early flower bud
PRJNA609149	SRX7815918	3.273777	Jinnan Shiqin	flower bud	middle flower bud	middle flower bud
PRJNA609149	SRX7815919	2.901212	Jinnan Shiqin	flower bud	early flowering period	early flowering period

Network

🔍 Co-expression Network

🔍 Protein-Protein Interaction Network

Orthology

Family	Species	Count	Orthologous Genes
Acanthaceae	Avicennia marina	2	jg36590, jg4619
Aizoaceae	Mesembryanthemum crystallinum	2	gene_25178, gene_25180
Amaranthaceae	Atriplex hortensis	2	Ah010571, Ah034697
Amaranthaceae	Beta vulgaris	2	BVRB_2g030270, BVRB_2g030280
Amaranthaceae	Salicornia bigelovii	4	Sbi_jg21815, Sbi_jg21817, Sbi_jg29471, Sbi_jg29472
Amaranthaceae	Salicornia europaea	2	Seu_jg15931, Seu_jg15932
Amaranthaceae	Suaeda aralocaspica	4	GOSA_00005171, GOSA_00005172, GOSA_00008551, GOSA_00008552
Amaranthaceae	Suaeda glauca	8	Sgl55923, Sgl61929, Sgl63227, Sgl63228, Sgl63362, Sgl63363 ... Sgl67839, Sgl67840
Amaranthaceae	Chenopodium album	3	gene:ENSEOMG00000016950, gene:ENSEOMG00000050154 ... gene:ENSEOMG00000050611
Amaranthaceae	Chenopodium quinoa	6	CQ.Regalona.r1.1BG0021250, CQ.Regalona.r1.1BG0021260 ... CQ.Regalona.r1.2AG0022920, CQ.Regalona.r1.2AG0022930, CQ.Regalona.r1.7BG0009880, CQ.Regalona.r1.9AG0014750
Anacardiaceae	Pistacia vera	3	pistato.v30128210, pistato.v30128230, pistato.v30250080
Apiaceae	Apium graveolens	4	Ag11G04428, Ag3G00508, Ag6G02488, Ag7G01957
Arecaceae	Cocos nucifera	1	scaffold102186G000010
Arecaceae	Phoenix dactylifera	1	gene-LOC120111958
Asparagaceae	Asparagus officinalis	2	AsparagusV1_01.2484.V1.1, AsparagusV1_01.2486.V1.1
Asteraceae	Flaveria trinervia	2	Ftri16G05763, Ftri16G06898
Brassicaceae	Arabidopsis thaliana	1	AT4G32300.1
Brassicaceae	Eutrema salsugineum	1	Thhalv10024411m.g.v1.0
Brassicaceae	Schrenkiella parvula	1	Sp7g30070.v2.2
Brassicaceae	Brassica nigra	5	BniB02g085810.2N, BniB03g010020.2N, BniB05g005760.2N ... BniB05g005780.2N, BniB05g005790.2N
Casuarinaceae	Casuarina equisetifolia	4	Ceq02G0310, Ceq02G0313, Ceq02G0314, Ceq04G2345
Casuarinaceae	Casuarina glauca	4	Cgl02G0322, Cgl02G0324, Cgl02G0325, Cgl04G2550
Cymodoceaceae	Cymodocea nodosa	2	gene.Cymno01g13590, gene.Cymno06g01850
Hydrocharitaceae	Thalassia testudinum	2	gene.Thate02g32480, gene.Thate06g14950
Malvaceae	Hibiscus hamabo Siebold & Zucc.	2	nbisL1-mrna-296, nbisL1-mrna-4498
Nitrariaceae	Nitraria sibirica	3	evm.TU.LG01.479, evm.TU.LG01.480, evm.TU.LG07.1450
Plantaginaceae	Plantago ovata	4	Pov_00013308, Pov_00013322, Pov_00013341, Pov_00013351
Plumbaginaceae	Limonium bicolor	4	Lb0G37072, Lb0G37859, Lb0G37860, Lb3G18277
Poaceae	Echinochloa crus-galli	3	AH06.1437, BH06.1443, CH06.1600
Poaceae	Eleusine coracana subsp. coracana	2	gene-QOZ80_6AG0519810, gene-QOZ80_6BG0472010
Poaceae	Hordeum vulgare	2	HORVU.MOREX.r3.3HG0233690.1 ... HORVU.MOREX.r3.7HG0676380.1.CDS1
Poaceae	Lolium multiflorum	1	gene-QYE76_029684
Poaceae	Oryza coarctata	2	Oco11G008660, Oco12G008650
Poaceae	Oryza sativa	1	LOC_Os06g29810.2
Poaceae	Paspalum vaginatum	1	gene-BS78_06G117000
Poaceae	Puccinellia tenuiflora	1	Pt_Chr0403910
Poaceae	Sporobolus alterniflorus	4	Chr10G002270, Chr11G016380, Chr14G005760, Chr21G006270
Poaceae	Thinopyrum elongatum	3	Tel3E01G161700, Tel3E01G778400, Tel7E01G415100
Poaceae	Triticum dicoccoides	4	gene_TRIDC3AG011020, gene_TRIDC3BG014880 ... gene_TRIDC7AG029680, gene_TRIDC7BG020420
Poaceae	Triticum aestivum	6	TraesCS3A02G091800.1, TraesCS3B02G107000.1 ... TraesCS3D02G480200.1, TraesCS7A02G230900.1.cds1, TraesCS7B02G196400.2.cds1, TraesCS7D02G231000.1.cds1
Poaceae	Zea mays	1	Zm00001eb382120_P001
Poaceae	Zoysia japonica	3	nbis-gene-28870, nbis-gene-43765, nbis-gene-55176
Poaceae	Zoysia macrostachya	2	Zma_g29644, Zma_g31854
Portulacaceae	Portulaca oleracea	2	evm.TU.LG04.1781, evm.TU.LG06.593
Posidoniaceae	Posidonia oceanica	1	gene.Posoc03g25420
Rhizophoraceae	Bruguiera sexangula	1	evm.TU.Scaffold_4_RagTag.1271
Rhizophoraceae	Carallia pectinifolia	2	nbisL1-mrna-27144, nbisL1-mrna-27328
Rhizophoraceae	Ceriops tagal	1	nbisL1-mrna-20473
Rhizophoraceae	Kandelia candel	1	add.evm.TU.utg000008l.297
Rhizophoraceae	Rhizophora apiculata	2	nbisL1-mrna-20635, nbisL1-mrna-20636
Rhizophoraceae	Rhizophora mangle	1	nbisL1-mrna-978
Salicaceae	Populus euphratica	1	populus_peu12900
Solanaceae	Lycium barbarum	1	gene-LOC132636203
Solanaceae	Solanum chilense	1	SOLCI001146000
Solanaceae	Solanum pennellii	1	gene-LOC107026740
Tamaricaceae	Reaumuria soongarica	3	STRG.19219_chr07_-, STRG.944_chr01_-, gene_10939
Tamaricaceae	Tamarix chinensis	4	TC01G1512, TC02G0509, TC08G2198, TC08G2202
Zosteraceae	Zostera marina	1	Zosma05g28640.v3.1