Basic Information
Locus ID:
Ag11G04418
Species & Taxonomic ID:
Apium graveolens & 4045
Genome Assembly:
GCA_009905375.1
Description:
Protein kinase domain
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr11 | 175075996 | 175079136 | + | Ag11G04418 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.36 | 64,429.56 Da | 29.15 | 90.61 | -0.21 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00069 | Protein kinase domain | 111 | 281 | 1.0E-22 | IPR000719 |
| SUPERFAMILY | SSF56112 | Protein kinase-like (PK-like) | 42 | 285 | 4.39E-45 | IPR011009 |
| Gene3D | G3DSA:1.10.510.10 | Transferase(Phosphotransferase) domain 1 | 105 | 312 | 3.2E-40 | - |
| Gene3D | G3DSA:3.30.200.20 | Phosphorylase Kinase; domain 1 | 19 | 100 | 2.3E-6 | - |
| ProSiteProfiles | PS50011 | Protein kinase domain profile. | 41 | 290 | 23.269524 | IPR000719 |
Gene Ontology
Biological Process:
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT4G32250.1 | Protein kinase superfamily protein. | 0 |
| RefSeq | XP_017230158.1 | PREDICTED: E3 ubiquitin-protein ligase KEG [Daucus carota subsp. sativus] | 0 |
| Q8RWX4 | Protein KINASE OF THE OUTER CHLOROPLAST MEMBRANE 1 OS=Arabidopsis thaliana OX=3702 GN=KOC1 PE=1 SV=1 | 0 | |
| TrEMBL | A0A166GEZ8 | Protein kinase domain-containing protein OS=Daucus carota subsp. sativus OX=79200 GN=DCAR_001540 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| PRJNA723697 | SRX10692252 | 0.118576 | Shengqin NO.2 | seed | S1-1 | S1-1 | initial formation stage (S1) |
| PRJNA723697 | SRX10692254 | 0.520039 | Shengqin NO.2 | seed | S1-3 | S1-3 | initial formation stage (S1) |
| PRJNA723697 | SRX10692255 | 0.327888 | Shengqin NO.2 | seed | S3-1 | S3-1 | middle development stage (S3) |
| PRJNA723697 | SRX10692256 | 0.444414 | Shengqin NO.2 | seed | S3-2 | S3-2 | middle development stage (S3) |
| PRJNA723697 | SRX10692257 | 0.421683 | Shengqin NO.2 | seed | S3-3 | S3-3 | middle development stage (S3) |
| PRJNA723697 | SRX10692258 | 1.43784 | Shengqin NO.2 | seed | S5-1 | S5-1 | maturation stage (S5) |
| PRJNA723697 | SRX10692259 | 0.729693 | Shengqin NO.2 | seed | S5-2 | S5-2 | maturation stage (S5) |
| PRJNA723697 | SRX10692260 | 0.720621 | Shengqin NO.2 | seed | S5-3 | S5-3 | maturation stage (S5) |
| PRJNA884666 | SRX17729272 | 0.057809 | celery | anther | W99A-r1 | male sterile line | |
| PRJNA884666 | SRX17729273 | 0.183712 | celery | anther | W99A-r2 | male sterile line | |
| PRJNA884666 | SRX17729274 | 0.411417 | celery | anther | W99A-r3 | male sterile line | |
| PRJNA884666 | SRX17729275 | 0.352013 | celery | anther | W99B-r1 | maintainer line | |
| PRJNA884666 | SRX17729276 | 2.345494 | celery | anther | W99B-r2 | maintainer line | |
| PRJNA884666 | SRX17729277 | 1.05055 | celery | anther | W99B-r3 | maintainer line | |
| PRJNA884180 | SRX17743889 | 0.303378 | var. secalinum Yablochny | collenchyma | Col_S1_rep1-1 | ||
| PRJNA884180 | SRX17748056 | 0.222237 | var. secalinum Yablochny | collenchyma | Col_S1_rep3 | biological replicate 3 | |
| PRJNA884180 | SRX17748057 | 0.088429 | var. secalinum Yablochny | collenchyma | Col_S1_rep4 | biological replicate 4 | |
| PRJNA884180 | SRX17748678 | 0.163783 | var. secalinum Yablochny | parenchyma | Par_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17748679 | 0.02706 | var. secalinum Yablochny | parenchyma | Par_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17748680 | 0.136189 | var. secalinum Yablochny | parenchyma | Par_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17748681 | 0.193826 | var. secalinum Yablochny | parenchyma | Par_S1_rep4 | Biological replicate 4 | |
| PRJNA884180 | SRX17748898 | 0.232359 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17748899 | 0.892746 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17748900 | 0.431702 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17748901 | 0 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep4 | Biological replicate 4 | |
| PRJNA884180 | SRX17749129 | 0.401106 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17749130 | 0.255399 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17749131 | 0.060886 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17749132 | 0.511207 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep4 | Biological replicate 4 | |
| PRJNA1124269 | SRX24936411 | 0.862907 | leaf | CK1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936412 | 0.536272 | leaf | CK2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936413 | 0.407179 | leaf | CK3 | replicate=biological replicate3 | ||
| PRJNA1124269 | SRX24936414 | 0.476368 | leaf | D1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936415 | 0.222397 | leaf | D2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936416 | 0.17386 | leaf | D3 | replicate=biological replicate3 | ||
| PRJNA1124269 | SRX24936417 | 0.372452 | leaf | MD1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936418 | 0.21548 | leaf | MD2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936419 | 0.285666 | leaf | MD3 | replicate=biological replicate3 | ||
| PRJNA387092 | SRX2833309 | 0 | shanghaihuangxin | leaf | leaves between 0.5 and 1 cm in breadth, folded; | stage 2 | |
| PRJNA387092 | SRX2833321 | 0 | shanghaihuangxin | leaf | leaves between 2and 2.5 cm in breadth, nearly unfolded, with clear stem exten-sion | stage 5 | |
| PRJNA387092 | SRX2833323 | 0.268782 | shanghaihuangxin | leaf | leaves >3 cm, unfolded, with clearstem extension | stage 7 | |
| PRJNA543957 | SRX5879598 | 11.661519 | Zhangzhou lvqing | stem | Se3 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879599 | 6.031317 | Zhangzhou lvqing | stem | Se2 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879600 | 0 | Zhangzhou lvqing | stem | Mock2 | mock | |
| PRJNA543957 | SRX5879601 | 0.115574 | Zhangzhou lvqing | stem | Mock1 | mock | |
| PRJNA543957 | SRX5879602 | 6.294556 | Zhangzhou lvqing | stem | Se1 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879603 | 0 | Zhangzhou lvqing | stem | Mock3 | mock | |
| PRJNA609149 | SRX7815917 | 0.251267 | Jinnan Shiqin | flower bud | early flower bud | early flower bud | |
| PRJNA609149 | SRX7815918 | 0.465579 | Jinnan Shiqin | flower bud | middle flower bud | middle flower bud | |
| PRJNA609149 | SRX7815919 | 0 | Jinnan Shiqin | flower bud | early flowering period | early flowering period |
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Acanthaceae | Avicennia marina | 2 | jg24014, jg25441 |
| Aizoaceae | Mesembryanthemum crystallinum | 1 | gene_25197 |
| Amaranthaceae | Atriplex hortensis | 2 | Ah034732, Ah034733 |
| Amaranthaceae | Salicornia bigelovii | 2 | Sbi_jg21157, Sbi_jg22646 |
| Amaranthaceae | Salicornia europaea | 1 | Seu_jg16532 |
| Amaranthaceae | Suaeda aralocaspica | 1 | GOSA_00016272 |
| Amaranthaceae | Suaeda glauca | 2 | Sgl62325, Sgl66865 |
| Amaranthaceae | Chenopodium album | 3 | gene:ENSEOMG00000016510, gene:ENSEOMG00000020750 ... |
| Amaranthaceae | Chenopodium quinoa | 2 | CQ.Regalona.r1.1BG0021340, CQ.Regalona.r1.2AG0023130 |
| Anacardiaceae | Pistacia vera | 3 | pistato.v30245490, pistato.v30250210, pistato.v30250230 |
| Apiaceae | Apium graveolens | 2 | Ag11G04418, Ag5G00143 |
| Arecaceae | Cocos nucifera | 2 | COCNU_01G010620, COCNU_11G007860 |
| Arecaceae | Phoenix dactylifera | 1 | gene-LOC103711487 |
| Asparagaceae | Asparagus officinalis | 1 | AsparagusV1_05.3272.V1.1 |
| Asteraceae | Flaveria trinervia | 2 | Ftri16G02737, Ftri4G30896 |
| Brassicaceae | Arabidopsis thaliana | 1 | AT4G32250.1 |
| Brassicaceae | Eutrema salsugineum | 1 | Thhalv10024659m.g.v1.0 |
| Brassicaceae | Schrenkiella parvula | 1 | Sp7g30000.v2.2 |
| Brassicaceae | Brassica nigra | 2 | BniB03g010090.2N, BniB05g005870.2N |
| Casuarinaceae | Casuarina equisetifolia | 4 | Ceq02G0328, Ceq04G2354, Ceq04G2356, Ceq04G2357 |
| Casuarinaceae | Casuarina glauca | 4 | Cgl04G2556, Cgl04G2558, Cgl04G2560, Cgl04G2561 |
| Cymodoceaceae | Cymodocea nodosa | 1 | gene.Cymno04g06120 |
| Hydrocharitaceae | Thalassia testudinum | 1 | gene.Thate04g25380 |
| Malvaceae | Hibiscus hamabo Siebold & Zucc. | 1 | nbisL1-mrna-8141 |
| Nitrariaceae | Nitraria sibirica | 2 | evm.TU.LG01.504, evm.TU.LG07.1459 |
| Plantaginaceae | Plantago ovata | 2 | Pov_00013289, Pov_00034465 |
| Plumbaginaceae | Limonium bicolor | 1 | Lb2G12566 |
| Poaceae | Echinochloa crus-galli | 3 | AH06.2412, BH06.2207, CH06.2426 |
| Poaceae | Eleusine coracana subsp. coracana | 2 | gene-QOZ80_6AG0546020, gene-QOZ80_6BG0499410 |
| Poaceae | Hordeum vulgare | 1 | HORVU.MOREX.r3.7HG0745900.1 |
| Poaceae | Lolium multiflorum | 1 | gene-QYE76_036764 |
| Poaceae | Oryza coarctata | 2 | Oco11G013590, Oco12G013740 |
| Poaceae | Oryza sativa | 1 | LOC_Os06g43270.1 |
| Poaceae | Paspalum vaginatum | 1 | gene-BS78_10G203000 |
| Poaceae | Puccinellia tenuiflora | 1 | Pt_Chr0401674 |
| Poaceae | Sporobolus alterniflorus | 3 | Chr05G008410, Chr10G018710, Chr11G003880 |
| Poaceae | Thinopyrum elongatum | 2 | Tel7E01G910500, Tel7E01G910600 |
| Poaceae | Triticum dicoccoides | 1 | gene_TRIDC7AG073260 |
| Poaceae | Triticum aestivum | 3 | TraesCS7A02G523000.2, TraesCS7B02G440000.2 ... |
| Poaceae | Zea mays | 1 | Zm00001eb387270_P001 |
| Poaceae | Zoysia japonica | 1 | nbis-gene-40931 |
| Poaceae | Zoysia macrostachya | 1 | Zma_g33121 |
| Portulacaceae | Portulaca oleracea | 2 | evm.TU.LG16.1599, evm.TU.LG26.69 |
| Posidoniaceae | Posidonia oceanica | 1 | gene.Posoc01g14300 |
| Rhizophoraceae | Bruguiera sexangula | 2 | evm.TU.Scaffold_10_RagTag.861, evm.TU.Scaffold_18_RagTag.408 |
| Rhizophoraceae | Carallia pectinifolia | 2 | nbisL1-mrna-13620, nbisL1-mrna-28115 |
| Rhizophoraceae | Ceriops tagal | 1 | nbisL1-mrna-17161 |
| Rhizophoraceae | Ceriops zippeliana | 2 | nbisL1-mrna-7847, nbisL1-mrna-9108 |
| Rhizophoraceae | Kandelia candel | 2 | evm.TU.utg000004l.174, evm.TU.utg000023l.210 |
| Rhizophoraceae | Kandelia obovata | 2 | Maker00004103, Maker00018999 |
| Rhizophoraceae | Rhizophora apiculata | 2 | nbisL1-mrna-3771, nbisL1-mrna-7269 |
| Rhizophoraceae | Rhizophora mangle | 1 | nbisL1-mrna-23379 |
| Salicaceae | Populus euphratica | 2 | populus_peu04752, populus_peu12921 |
| Solanaceae | Lycium barbarum | 2 | gene-LOC132625831, gene-LOC132636183 |
| Solanaceae | Solanum chilense | 1 | SOLCI005035800 |
| Solanaceae | Solanum pennellii | 1 | gene-LOC107008358 |
| Tamaricaceae | Reaumuria soongarica | 1 | STRG.939_chr01_+ |
| Tamaricaceae | Tamarix chinensis | 2 | TC01G1493, TC02G0517 |
| Zosteraceae | Zostera marina | 1 | Zosma03g37100.v3.1 |