Basic Information
Locus ID:
Ag11G04408
Species & Taxonomic ID:
Apium graveolens & 4045
Genome Assembly:
GCA_009905375.1
Description:
Large proline-rich protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr11 | 174711691 | 174721810 | - | Ag11G04408 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.34 | 69,932.38 Da | 48.23 | 73.70 | -0.37 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd17039 | Ubl_ubiquitin_like | 26 | 93 | 2.38557E-19 | - |
| Pfam | PF00240 | Ubiquitin family | 26 | 96 | 2.2E-18 | IPR000626 |
| SUPERFAMILY | SSF54236 | Ubiquitin-like | 16 | 97 | 2.76E-22 | IPR029071 |
| Gene3D | G3DSA:3.10.20.90 | - | 18 | 104 | 5.1E-25 | - |
| SMART | SM00213 | ubq_7 | 24 | 95 | 1.9E-20 | IPR000626 |
| ProSiteProfiles | PS50053 | Ubiquitin domain profile. | 24 | 97 | 19.869261 | IPR000626 |
| PRINTS | PR00348 | Ubiquitin signature | 55 | 75 | 2.1E-5 | IPR019956 |
| PRINTS | PR00348 | Ubiquitin signature | 76 | 97 | 2.1E-5 | IPR019956 |
| PRINTS | PR00348 | Ubiquitin signature | 34 | 54 | 2.1E-5 | IPR019956 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 241 | 268 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 241 | 264 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 21 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 619 | 675 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 651 | 675 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 515 | 543 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 425 | 466 | - | - |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G25270.1 | Ubiquitin-like superfamily protein. | 0 |
| RefSeq | XP_017236244.1 | PREDICTED: large proline-rich protein bag6-A isoform X1 [Daucus carota subsp. sativus] | 0 |
| D5LXJ0 | Ubiquitin-like domain-containing protein CIP73 OS=Lotus japonicus OX=34305 GN=CIP73 PE=1 SV=1 | 0 | |
| TrEMBL | A0A166DKS9 | Ubiquitin-like domain-containing protein OS=Daucus carota subsp. sativus OX=79200 GN=DCAR_006203 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| PRJNA723697 | SRX10692252 | 25.310425 | Shengqin NO.2 | seed | S1-1 | S1-1 | initial formation stage (S1) |
| PRJNA723697 | SRX10692254 | 25.774569 | Shengqin NO.2 | seed | S1-3 | S1-3 | initial formation stage (S1) |
| PRJNA723697 | SRX10692255 | 31.324474 | Shengqin NO.2 | seed | S3-1 | S3-1 | middle development stage (S3) |
| PRJNA723697 | SRX10692256 | 32.498264 | Shengqin NO.2 | seed | S3-2 | S3-2 | middle development stage (S3) |
| PRJNA723697 | SRX10692257 | 31.696724 | Shengqin NO.2 | seed | S3-3 | S3-3 | middle development stage (S3) |
| PRJNA723697 | SRX10692258 | 36.09277 | Shengqin NO.2 | seed | S5-1 | S5-1 | maturation stage (S5) |
| PRJNA723697 | SRX10692259 | 35.978233 | Shengqin NO.2 | seed | S5-2 | S5-2 | maturation stage (S5) |
| PRJNA723697 | SRX10692260 | 34.864708 | Shengqin NO.2 | seed | S5-3 | S5-3 | maturation stage (S5) |
| PRJNA884666 | SRX17729272 | 33.580845 | celery | anther | W99A-r1 | male sterile line | |
| PRJNA884666 | SRX17729273 | 33.546219 | celery | anther | W99A-r2 | male sterile line | |
| PRJNA884666 | SRX17729274 | 35.144241 | celery | anther | W99A-r3 | male sterile line | |
| PRJNA884666 | SRX17729275 | 33.565773 | celery | anther | W99B-r1 | maintainer line | |
| PRJNA884666 | SRX17729276 | 38.664135 | celery | anther | W99B-r2 | maintainer line | |
| PRJNA884666 | SRX17729277 | 36.084908 | celery | anther | W99B-r3 | maintainer line | |
| PRJNA884180 | SRX17743889 | 21.524706 | var. secalinum Yablochny | collenchyma | Col_S1_rep1-1 | ||
| PRJNA884180 | SRX17748056 | 26.04903 | var. secalinum Yablochny | collenchyma | Col_S1_rep3 | biological replicate 3 | |
| PRJNA884180 | SRX17748057 | 23.918184 | var. secalinum Yablochny | collenchyma | Col_S1_rep4 | biological replicate 4 | |
| PRJNA884180 | SRX17748678 | 38.77673 | var. secalinum Yablochny | parenchyma | Par_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17748679 | 31.835279 | var. secalinum Yablochny | parenchyma | Par_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17748680 | 37.504787 | var. secalinum Yablochny | parenchyma | Par_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17748681 | 40.752495 | var. secalinum Yablochny | parenchyma | Par_S1_rep4 | Biological replicate 4 | |
| PRJNA884180 | SRX17748898 | 31.58601 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17748899 | 31.602079 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17748900 | 30.260067 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17748901 | 26.892376 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep4 | Biological replicate 4 | |
| PRJNA884180 | SRX17749129 | 37.343288 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17749130 | 33.200581 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17749131 | 34.7729 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17749132 | 35.43782 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep4 | Biological replicate 4 | |
| PRJNA1124269 | SRX24936411 | 22.684507 | leaf | CK1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936412 | 25.700935 | leaf | CK2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936413 | 19.302652 | leaf | CK3 | replicate=biological replicate3 | ||
| PRJNA1124269 | SRX24936414 | 28.207401 | leaf | D1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936415 | 20.389057 | leaf | D2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936416 | 25.414797 | leaf | D3 | replicate=biological replicate3 | ||
| PRJNA1124269 | SRX24936417 | 26.131399 | leaf | MD1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936418 | 24.030188 | leaf | MD2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936419 | 24.468393 | leaf | MD3 | replicate=biological replicate3 | ||
| PRJNA387092 | SRX2833309 | 33.138485 | shanghaihuangxin | leaf | leaves between 0.5 and 1 cm in breadth, folded; | stage 2 | |
| PRJNA387092 | SRX2833321 | 18.021597 | shanghaihuangxin | leaf | leaves between 2and 2.5 cm in breadth, nearly unfolded, with clear stem exten-sion | stage 5 | |
| PRJNA387092 | SRX2833323 | 15.630351 | shanghaihuangxin | leaf | leaves >3 cm, unfolded, with clearstem extension | stage 7 | |
| PRJNA543957 | SRX5879598 | 42.116371 | Zhangzhou lvqing | stem | Se3 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879599 | 55.588654 | Zhangzhou lvqing | stem | Se2 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879600 | 124.696297 | Zhangzhou lvqing | stem | Mock2 | mock | |
| PRJNA543957 | SRX5879601 | 85.086754 | Zhangzhou lvqing | stem | Mock1 | mock | |
| PRJNA543957 | SRX5879602 | 43.011875 | Zhangzhou lvqing | stem | Se1 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879603 | 64.271851 | Zhangzhou lvqing | stem | Mock3 | mock | |
| PRJNA609149 | SRX7815917 | 29.438526 | Jinnan Shiqin | flower bud | early flower bud | early flower bud | |
| PRJNA609149 | SRX7815918 | 26.331949 | Jinnan Shiqin | flower bud | middle flower bud | middle flower bud | |
| PRJNA609149 | SRX7815919 | 28.965933 | Jinnan Shiqin | flower bud | early flowering period | early flowering period |
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Acanthaceae | Avicennia marina | 1 | jg4628 |
| Aizoaceae | Mesembryanthemum crystallinum | 1 | gene_8925 |
| Amaranthaceae | Atriplex hortensis | 1 | Ah014199 |
| Amaranthaceae | Beta vulgaris | 1 | BVRB_8g192830 |
| Amaranthaceae | Salicornia bigelovii | 2 | Sbi_jg25456, Sbi_jg9309 |
| Amaranthaceae | Salicornia europaea | 1 | Seu_jg19292 |
| Amaranthaceae | Suaeda aralocaspica | 1 | GOSA_00011088 |
| Amaranthaceae | Suaeda glauca | 2 | Sgl41866, Sgl46668 |
| Amaranthaceae | Chenopodium album | 3 | gene:ENSEOMG00000009121, gene:ENSEOMG00000032615 ... |
| Amaranthaceae | Chenopodium quinoa | 2 | CQ.Regalona.r1.8AG0023200, CQ.Regalona.r1.8BG0019150 |
| Anacardiaceae | Pistacia vera | 1 | pistato.v30179830 |
| Apiaceae | Apium graveolens | 2 | Ag11G04408, Ag8G00354 |
| Arecaceae | Cocos nucifera | 1 | COCNU_01G010250 |
| Arecaceae | Phoenix dactylifera | 1 | gene-LOC103715983 |
| Asparagaceae | Asparagus officinalis | 1 | AsparagusV1_01.97.V1.1 |
| Asteraceae | Flaveria trinervia | 1 | Ftri12G00561 |
| Brassicaceae | Arabidopsis thaliana | 1 | AT5G25270.1 |
| Brassicaceae | Eutrema salsugineum | 1 | Thhalv10003804m.g.v1.0 |
| Brassicaceae | Schrenkiella parvula | 1 | Sp2g22260.v2.2 |
| Brassicaceae | Brassica nigra | 2 | BniB02g077850.2N, BniB04g003860.2N |
| Casuarinaceae | Casuarina equisetifolia | 1 | Ceq03G2485 |
| Casuarinaceae | Casuarina glauca | 1 | Cgl03G2623 |
| Cymodoceaceae | Cymodocea nodosa | 1 | gene.Cymno04g08110 |
| Hydrocharitaceae | Thalassia testudinum | 1 | gene.Thate04g29320 |
| Nitrariaceae | Nitraria sibirica | 1 | evm.TU.LG07.105 |
| Plantaginaceae | Plantago ovata | 1 | Pov_00019330 |
| Plumbaginaceae | Limonium bicolor | 4 | Lb0G38266, Lb0G38267, Lb6G32004, Lb6G32012 |
| Poaceae | Echinochloa crus-galli | 2 | AH03.318, CH03.467 |
| Poaceae | Eleusine coracana subsp. coracana | 2 | gene-QOZ80_8AG0625670, gene-QOZ80_8BG0655230 |
| Poaceae | Hordeum vulgare | 1 | HORVU.MOREX.r3.3HG0231510.2 |
| Poaceae | Lolium multiflorum | 1 | gene-QYE76_032117 |
| Poaceae | Oryza coarctata | 2 | Oco15G005790, Oco16G005590 |
| Poaceae | Oryza sativa | 1 | LOC_Os08g19830.1 |
| Poaceae | Paspalum vaginatum | 1 | gene-BS78_02G027900 |
| Poaceae | Puccinellia tenuiflora | 1 | Pt_Chr0201858 |
| Poaceae | Sporobolus alterniflorus | 2 | Chr16G012400, Chr17G011730 |
| Poaceae | Thinopyrum elongatum | 1 | Tel3E01G144200 |
| Poaceae | Triticum dicoccoides | 2 | gene_TRIDC3AG009430, gene_TRIDC3BG013280 |
| Poaceae | Triticum aestivum | 3 | TraesCS3A02G079200.2, TraesCS3B02G094400.5 ... |
| Poaceae | Zea mays | 1 | Zm00001eb067410_P001 |
| Poaceae | Zoysia japonica | 1 | nbis-gene-45895 |
| Poaceae | Zoysia macrostachya | 1 | Zma_g22783 |
| Portulacaceae | Portulaca oleracea | 2 | evm.TU.LG04.1092, evm.TU.LG05.1636 |
| Posidoniaceae | Posidonia oceanica | 2 | gene.Posoc01g18170, gene.Posoc03g12030 |
| Rhizophoraceae | Bruguiera sexangula | 1 | evm.TU.Scaffold_10_RagTag.109 |
| Rhizophoraceae | Carallia pectinifolia | 1 | nbisL1-mrna-13900 |
| Rhizophoraceae | Ceriops tagal | 1 | nbisL1-mrna-21296 |
| Rhizophoraceae | Ceriops zippeliana | 1 | nbisL1-mrna-16545 |
| Rhizophoraceae | Kandelia candel | 1 | evm.TU.utg000033l.71 |
| Rhizophoraceae | Kandelia obovata | 1 | Maker00015182 |
| Rhizophoraceae | Rhizophora apiculata | 1 | nbisL1-mrna-16703 |
| Rhizophoraceae | Rhizophora mangle | 1 | nbisL1-mrna-14504 |
| Salicaceae | Populus euphratica | 2 | populus_peu05666, populus_peu11030 |
| Solanaceae | Lycium barbarum | 3 | gene-LOC132606074, gene-LOC132625479, gene-LOC132625485 |
| Solanaceae | Solanum chilense | 1 | SOLCI003292800 |
| Solanaceae | Solanum pennellii | 1 | gene-LOC107023172 |
| Tamaricaceae | Reaumuria soongarica | 1 | gene_9024 |
| Tamaricaceae | Tamarix chinensis | 1 | TC10G1143 |
| Zosteraceae | Zostera marina | 2 | Zosma05g18810.v3.1, Zosma05g18820.v3.1 |