halophFGD

Basic Information

Locus ID: Ag11G04405

Species & Taxonomic ID: Apium graveolens & 4045

Genome Assembly: GCA_009905375.1

Description: hydroxyproline O-arabinosyltransferase activity

Maps and Mapping Data

Chromosome	Start	End	Strand	ID
chr11	174689803	174695431	+	Ag11G04405

Protein Data

Protein Properties:

Theoretical pI	Molecular Weight	Instability Index	Aliphatic Index	GRAVY
6.33	41,604.52 Da	50.30	80.54	-0.25

Protein Domain:

Category	ID	Description	Start	End	Evalue/Score	InterPro ID

KEGG Pathway

KO Term:

K20782 (hydroxyproline O-arabinosyltransferase [EC:2.4.2.58])

Pathway:

ko00514 (Other types of O-glycan biosynthesis) map00514 (Other types of O-glycan biosynthesis)

Best hit

Source	Best Hit ID	Description
TAIR	AT5G25265.1
RefSeq	XP_017231212.1	PREDICTED: uncharacterized protein LOC108205699 [Daucus carota subsp. sativus]
Swiss-Prot	Q8W4E6	Hydroxyproline O-arabinosyltransferase 1 OS=Arabidopsis thaliana OX=3702 GN=HPAT1 PE=1 SV=1
TrEMBL	A0A166DKS1	Hydroxyproline O-arabinosyltransferase 1-like OS=Daucus carota subsp. sativus OX=79200 GN=DCAR_006201 PE=4 SV=1

Expression

BioProject	Accession	TPM	Cultivar	Tissue	Development Stage	Sample Name	Description
PRJNA723697	SRX10692252	45.714737	Shengqin NO.2	seed	S1-1	S1-1	initial formation stage (S1)
PRJNA723697	SRX10692254	49.388374	Shengqin NO.2	seed	S1-3	S1-3	initial formation stage (S1)
PRJNA723697	SRX10692255	53.105808	Shengqin NO.2	seed	S3-1	S3-1	middle development stage (S3)
PRJNA723697	SRX10692256	57.432327	Shengqin NO.2	seed	S3-2	S3-2	middle development stage (S3)
PRJNA723697	SRX10692257	59.857204	Shengqin NO.2	seed	S3-3	S3-3	middle development stage (S3)
PRJNA723697	SRX10692258	50.823975	Shengqin NO.2	seed	S5-1	S5-1	maturation stage (S5)
PRJNA723697	SRX10692259	42.740135	Shengqin NO.2	seed	S5-2	S5-2	maturation stage (S5)
PRJNA723697	SRX10692260	34.858566	Shengqin NO.2	seed	S5-3	S5-3	maturation stage (S5)
PRJNA884666	SRX17729272	73.617584	celery	anther		W99A-r1	male sterile lineÂ
PRJNA884666	SRX17729273	78.070854	celery	anther		W99A-r2	male sterile lineÂ
PRJNA884666	SRX17729274	80.79039	celery	anther		W99A-r3	male sterile lineÂ
PRJNA884666	SRX17729275	78.988953	celery	anther		W99B-r1	maintainer line
PRJNA884666	SRX17729276	67.562683	celery	anther		W99B-r2	maintainer line
PRJNA884666	SRX17729277	58.469601	celery	anther		W99B-r3	maintainer line
PRJNA884180	SRX17743889	45.105179	var. secalinum Yablochny	collenchyma		Col_S1_rep1-1
PRJNA884180	SRX17748056	49.355961	var. secalinum Yablochny	collenchyma		Col_S1_rep3	biological replicate 3
PRJNA884180	SRX17748057	67.660789	var. secalinum Yablochny	collenchyma		Col_S1_rep4	biological replicate 4
PRJNA884180	SRX17748678	63.420109	var. secalinum Yablochny	parenchyma		Par_S1_rep1	Biological replicate 1
PRJNA884180	SRX17748679	44.434326	var. secalinum Yablochny	parenchyma		Par_S1_rep2	Biological replicate 2
PRJNA884180	SRX17748680	68.917526	var. secalinum Yablochny	parenchyma		Par_S1_rep3	Biological replicate 3
PRJNA884180	SRX17748681	73.586525	var. secalinum Yablochny	parenchyma		Par_S1_rep4	Biological replicate 4
PRJNA884180	SRX17748898	56.410591	var. secalinum Yablochny	vascular bundle		Vas_S1_rep1	Biological replicate 1
PRJNA884180	SRX17748899	62.153042	var. secalinum Yablochny	vascular bundle		Vas_S1_rep2	Biological replicate 2
PRJNA884180	SRX17748900	59.7061	var. secalinum Yablochny	vascular bundle		Vas_S1_rep3	Biological replicate 3
PRJNA884180	SRX17748901	55.275436	var. secalinum Yablochny	vascular bundle		Vas_S1_rep4	Biological replicate 4
PRJNA884180	SRX17749129	56.503704	var. secalinum Yablochny	part of the celery petiole without collenchyma strands		Collenchyma-free_S1_rep1	Biological replicate 1
PRJNA884180	SRX17749130	54.468571	var. secalinum Yablochny	part of the celery petiole without collenchyma strands		Collenchyma-free_S1_rep2	Biological replicate 2
PRJNA884180	SRX17749131	43.518215	var. secalinum Yablochny	part of the celery petiole without collenchyma strands		Collenchyma-free_S1_rep3	Biological replicate 3
PRJNA884180	SRX17749132	56.26786	var. secalinum Yablochny	part of the celery petiole without collenchyma strands		Collenchyma-free_S1_rep4	Biological replicate 4
PRJNA1124269	SRX24936411	7.192165		leaf		CK1	replicate=biological replicate1
PRJNA1124269	SRX24936412	8.518236		leaf		CK2	replicate=biological replicate2
PRJNA1124269	SRX24936413	7.49601		leaf		CK3	replicate=biological replicate3
PRJNA1124269	SRX24936414	21.626314		leaf		D1	replicate=biological replicate1
PRJNA1124269	SRX24936415	48.976612		leaf		D2	replicate=biological replicate2
PRJNA1124269	SRX24936416	31.732817		leaf		D3	replicate=biological replicate3
PRJNA1124269	SRX24936417	20.138639		leaf		MD1	replicate=biological replicate1
PRJNA1124269	SRX24936418	7.129449		leaf		MD2	replicate=biological replicate2
PRJNA1124269	SRX24936419	13.283265		leaf		MD3	replicate=biological replicate3
PRJNA387092	SRX2833309	47.57761	shanghaihuangxin	leaf	leaves between 0.5 and 1 cm in breadth, folded;	stage 2
PRJNA387092	SRX2833321	32.95628	shanghaihuangxin	leaf	leaves between 2and 2.5 cm in breadth, nearly unfolded, with clear stem exten-sion	stage 5
PRJNA387092	SRX2833323	13.157844	shanghaihuangxin	leaf	leaves >3 cm, unfolded, with clearstem extension	stage 7
PRJNA543957	SRX5879598	185.029724	Zhangzhou lvqing	stem		Se3	100 ppm Na2SeO4
PRJNA543957	SRX5879599	101.73967	Zhangzhou lvqing	stem		Se2	100 ppm Na2SeO4
PRJNA543957	SRX5879600	35.342873	Zhangzhou lvqing	stem		Mock2	mock
PRJNA543957	SRX5879601	42.556965	Zhangzhou lvqing	stem		Mock1	mock
PRJNA543957	SRX5879602	229.98999	Zhangzhou lvqing	stem		Se1	100 ppm Na2SeO4
PRJNA543957	SRX5879603	43.531094	Zhangzhou lvqing	stem		Mock3	mock
PRJNA609149	SRX7815917	68.794678	Jinnan Shiqin	flower bud	early flower bud	early flower bud
PRJNA609149	SRX7815918	71.591171	Jinnan Shiqin	flower bud	middle flower bud	middle flower bud
PRJNA609149	SRX7815919	73.479179	Jinnan Shiqin	flower bud	early flowering period	early flowering period

Network

🔍 Co-expression Network

🔍 Protein-Protein Interaction Network

Orthology

Family	Species	Count	Orthologous Genes
Acanthaceae	Avicennia marina	6	jg1537, jg29894, jg35605, jg36566, jg4630, jg8523
Aizoaceae	Mesembryanthemum crystallinum	4	gene_17153, gene_17905, gene_9966, gene_9967
Amaranthaceae	Atriplex hortensis	5	Ah005072, Ah005073, Ah032343, Ah034803, Ah038287
Amaranthaceae	Beta vulgaris	4	BVRB_2g030960, BVRB_2g041690, BVRB_4g073690, BVRB_4g073700
Amaranthaceae	Salicornia bigelovii	6	Sbi_jg17784, Sbi_jg21109, Sbi_jg22695, Sbi_jg30012 ... Sbi_jg43450, Sbi_jg62444
Amaranthaceae	Salicornia europaea	3	Seu_jg1018, Seu_jg16571, Seu_jg18450
Amaranthaceae	Suaeda aralocaspica	3	GOSA_00004219, GOSA_00007208, GOSA_00018306
Amaranthaceae	Suaeda glauca	6	Sgl59148, Sgl59149, Sgl62374, Sgl66233, Sgl66911, Sgl70551
Amaranthaceae	Chenopodium album	8	gene:ENSEOMG00000013319, gene:ENSEOMG00000017584 ... gene:ENSEOMG00000020257, gene:ENSEOMG00000020355, gene:ENSEOMG00000029773, gene:ENSEOMG00000042139, gene:ENSEOMG00000050145, gene:ENSEOMG00000051874
Amaranthaceae	Chenopodium quinoa	5	CQ.Regalona.r1.1BG0021720, CQ.Regalona.r1.2AG0004190 ... CQ.Regalona.r1.2AG0023450, CQ.Regalona.r1.2BG0005470, CQ.Regalona.r1.4AG0002210
Anacardiaceae	Pistacia vera	3	pistato.v30038820, pistato.v30050700, pistato.v30250560
Apiaceae	Apium graveolens	4	Ag11G04405, Ag7G01349, Ag7G01705, Ag9G01468
Arecaceae	Cocos nucifera	4	COCNU_02G017910, COCNU_04G006760, COCNU_12G004520 ... COCNU_16G002030
Arecaceae	Phoenix dactylifera	4	gene-LOC103701651, gene-LOC103705083, gene-LOC103716922 ... gene-LOC103719210
Asparagaceae	Asparagus officinalis	3	AsparagusV1_03.2504.V1.1, AsparagusV1_07.1688.V1.1 ... AsparagusV1_08.815.V1.1
Asteraceae	Flaveria trinervia	3	Ftri15G31300, Ftri16G19837, Ftri18G14732
Brassicaceae	Arabidopsis thaliana	3	AT2G25260.1, AT5G13500.1, AT5G25265.1
Brassicaceae	Eutrema salsugineum	3	Thhalv10000212m.g.v1.0, Thhalv10004426m.g.v1.0 ... Thhalv10013935m.g.v1.0
Brassicaceae	Schrenkiella parvula	3	Sp2g22280.v2.2, Sp4g04380.v2.2, Sp6g30520.v2.2
Brassicaceae	Brassica nigra	6	BniB01g018020.2N, BniB02g049040.2N, BniB04g003850.2N ... BniB05g024840.2N, BniB07g039850.2N, BniB08g006360.2N
Casuarinaceae	Casuarina equisetifolia	4	Ceq04G2400, Ceq04G2402, Ceq05G0896, Ceq05G1620
Casuarinaceae	Casuarina glauca	5	Cgl04G2601, Cgl04G2606, Cgl04G2607, Cgl05G0908, Cgl05G1615
Cymodoceaceae	Cymodocea nodosa	4	gene.Cymno02g05430, gene.Cymno05g01840, gene.Cymno06g08030 ... gene.Cymno08g05450
Dunaliellaceae	Dunaliella salina	1	Dusal.0438s00001.v1.0
Hydrocharitaceae	Thalassia testudinum	4	gene.Thate01g12710, gene.Thate01g26000, gene.Thate02g08060 ... gene.Thate07g07870
Nitrariaceae	Nitraria sibirica	3	evm.TU.LG02.2004, evm.TU.LG07.1492, evm.TU.LG09.131
Plantaginaceae	Plantago ovata	3	Pov_00004805, Pov_00024396, Pov_00039380
Plumbaginaceae	Limonium bicolor	6	Lb0G36730, Lb1G02367, Lb2G12888, Lb2G12946, Lb7G35164 ... Lb7G35168
Poaceae	Echinochloa crus-galli	12	AH05.2640, AH06.534, AH07.3301, BH05.1185, BH05.2727 ... BH06.578, BH07.3119, CH01.2671, CH01.4786, CH05.1525, CH06.593, CH07.3189
Poaceae	Eleusine coracana subsp. coracana	6	gene-QOZ80_1AG0004110, gene-QOZ80_1BG0052530 ... gene-QOZ80_5AG0374990, gene-QOZ80_5BG0421250, gene-QOZ80_6AG0511060, gene-QOZ80_6BG0463130
Poaceae	Hordeum vulgare	4	HORVU.MOREX.r3.1HG0058910.1, HORVU.MOREX.r3.3HG0256430.1 ... HORVU.MOREX.r3.5HG0497880.1, HORVU.MOREX.r3.7HG0658270.1
Poaceae	Lolium multiflorum	5	gene-QYE76_018368, gene-QYE76_027711, gene-QYE76_028226 ... gene-QYE76_028268, gene-QYE76_052374
Poaceae	Oryza coarctata	6	Oco01G007650, Oco02G007970, Oco09G008470, Oco10G008630 ... Oco11G003670, Oco12G003660
Poaceae	Oryza sativa	3	LOC_Os01g16600.1, LOC_Os05g32060.1, LOC_Os06g08180.1
Poaceae	Paspalum vaginatum	3	gene-BS78_03G116500, gene-BS78_09G129000 ... gene-BS78_10G063300
Poaceae	Puccinellia tenuiflora	4	Pt_Chr0207119, Pt_Chr0505473, Pt_Chr0603774, Pt_Chr0603856
Poaceae	Sporobolus alterniflorus	7	Chr02G026970, Chr03G001270, Chr05G004680, Chr08G003870 ... Chr11G021610, Chr18G007930, Chr22G009630
Poaceae	Thinopyrum elongatum	3	Tel1E01G400100, Tel3E01G322100, Tel7E01G293300
Poaceae	Triticum dicoccoides	6	gene_TRIDC1AG036380, gene_TRIDC1BG041460 ... gene_TRIDC3AG026020, gene_TRIDC3BG029740, gene_TRIDC7AG017470, gene_TRIDC7BG006730
Poaceae	Triticum aestivum	9	TraesCS1A02G241300.1, TraesCS1B02G253100.2 ... TraesCS1D02G241200.1, TraesCS3A02G187000.1, TraesCS3B02G216400.1, TraesCS3D02G190800.1, TraesCS7A02G143900.1, TraesCS7B02G046000.1, TraesCS7D02G145400.1
Poaceae	Zea mays	3	Zm00001eb287070_P001, Zm00001eb332930_P001 ... Zm00001eb374910_P001
Poaceae	Zoysia japonica	2	nbis-gene-23691, nbis-gene-5030
Poaceae	Zoysia macrostachya	4	Zma_g28156, Zma_g29219, Zma_g7343, Zma_g9675
Portulacaceae	Portulaca oleracea	8	evm.TU.LG10.396, evm.TU.LG17.393, evm.TU.LG18.1690 ... evm.TU.LG19.1003, evm.TU.LG19.1005, evm.TU.LG20.194, evm.TU.LG24.1010, evm.TU.LG24.1012
Posidoniaceae	Posidonia oceanica	4	gene.Posoc01g04030, gene.Posoc02g23860, gene.Posoc03g12120 ... gene.Posoc05g13690
Rhizophoraceae	Bruguiera sexangula	3	evm.TU.Scaffold_10_RagTag.876, evm.TU.Scaffold_11_RagTag.73 ... evm.TU.Scaffold_13_RagTag.987
Rhizophoraceae	Carallia pectinifolia	2	nbisL1-mrna-13599, nbisL1-mrna-7168
Rhizophoraceae	Ceriops tagal	3	nbisL1-mrna-12484, nbisL1-mrna-17179, nbisL1-mrna-4876
Rhizophoraceae	Ceriops zippeliana	3	nbisL1-mrna-14495, nbisL1-mrna-16350, nbisL1-mrna-9127
Rhizophoraceae	Kandelia candel	2	add.evm.TU.utg000005l.139, evm.TU.utg000004l.192
Rhizophoraceae	Kandelia obovata	2	Maker00003935, Maker00015504
Rhizophoraceae	Rhizophora apiculata	3	nbisL1-mrna-255, nbisL1-mrna-3753, nbisL1-mrna-4494
Rhizophoraceae	Rhizophora mangle	3	nbisL1-mrna-20807, nbisL1-mrna-22063, nbisL1-mrna-7835
Salicaceae	Populus euphratica	6	populus_peu01786, populus_peu04723, populus_peu12954 ... populus_peu35056, populus_peu36032, populus_peu37280
Solanaceae	Lycium barbarum	3	gene-LOC132600474, gene-LOC132636155, gene-LOC132643650
Solanaceae	Solanum chilense	2	SOLCI006039000, SOLCI006236600
Solanaceae	Solanum pennellii	2	gene-LOC107003047, gene-LOC107026711
Tamaricaceae	Reaumuria soongarica	3	gene_14393, gene_7304, gene_9765
Tamaricaceae	Tamarix chinensis	2	TC01G1445, TC01G3908
Zosteraceae	Zostera marina	5	Zosma01g41290.v3.1, Zosma01g41300.v3.1, Zosma03g01870.v3.1 ... Zosma06g16050.v3.1, Zosma06g16100.v3.1