Basic Information
Locus ID:
Ag11G04396
Species & Taxonomic ID:
Apium graveolens & 4045
Genome Assembly:
GCA_009905375.1
Description:
Protein kinase domain
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr11 | 173821974 | 173827321 | - | Ag11G04396 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.87 | 33,812.19 Da | 38.70 | 89.93 | -0.21 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF07714 | Protein tyrosine and serine/threonine kinase | 43 | 184 | 1.8E-13 | IPR001245 |
| SUPERFAMILY | SSF56112 | Protein kinase-like (PK-like) | 21 | 265 | 5.19E-34 | IPR011009 |
| Gene3D | G3DSA:1.10.510.10 | Transferase(Phosphotransferase) domain 1 | 113 | 293 | 5.3E-23 | - |
| Gene3D | G3DSA:3.30.200.20 | Phosphorylase Kinase; domain 1 | 14 | 111 | 1.0E-15 | - |
| ProSiteProfiles | PS50011 | Protein kinase domain profile. | 39 | 279 | 12.570086 | IPR000719 |
Gene Ontology
Biological Process:
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G22050.2 | Protein kinase superfamily protein. | 0 |
| RefSeq | XP_017231586.1 | PREDICTED: probable receptor-like protein kinase At1g49730 [Daucus carota subsp. sativus] | 0 |
| Q9FX99 | Probable receptor-like protein kinase At1g49730 OS=Arabidopsis thaliana OX=3702 GN=At1g49730 PE=2 SV=1 | 0 | |
| TrEMBL | A0A166DKC6 | Protein kinase domain-containing protein OS=Daucus carota subsp. sativus OX=79200 GN=DCAR_006187 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| PRJNA723697 | SRX10692252 | 9.701672 | Shengqin NO.2 | seed | S1-1 | S1-1 | initial formation stage (S1) |
| PRJNA723697 | SRX10692254 | 10.846212 | Shengqin NO.2 | seed | S1-3 | S1-3 | initial formation stage (S1) |
| PRJNA723697 | SRX10692255 | 10.262703 | Shengqin NO.2 | seed | S3-1 | S3-1 | middle development stage (S3) |
| PRJNA723697 | SRX10692256 | 11.995959 | Shengqin NO.2 | seed | S3-2 | S3-2 | middle development stage (S3) |
| PRJNA723697 | SRX10692257 | 10.733189 | Shengqin NO.2 | seed | S3-3 | S3-3 | middle development stage (S3) |
| PRJNA723697 | SRX10692258 | 8.236838 | Shengqin NO.2 | seed | S5-1 | S5-1 | maturation stage (S5) |
| PRJNA723697 | SRX10692259 | 8.823133 | Shengqin NO.2 | seed | S5-2 | S5-2 | maturation stage (S5) |
| PRJNA723697 | SRX10692260 | 5.313092 | Shengqin NO.2 | seed | S5-3 | S5-3 | maturation stage (S5) |
| PRJNA884666 | SRX17729272 | 21.311953 | celery | anther | W99A-r1 | male sterile line | |
| PRJNA884666 | SRX17729273 | 17.128693 | celery | anther | W99A-r2 | male sterile line | |
| PRJNA884666 | SRX17729274 | 22.97093 | celery | anther | W99A-r3 | male sterile line | |
| PRJNA884666 | SRX17729275 | 16.073839 | celery | anther | W99B-r1 | maintainer line | |
| PRJNA884666 | SRX17729276 | 18.178535 | celery | anther | W99B-r2 | maintainer line | |
| PRJNA884666 | SRX17729277 | 14.14076 | celery | anther | W99B-r3 | maintainer line | |
| PRJNA884180 | SRX17743889 | 42.318947 | var. secalinum Yablochny | collenchyma | Col_S1_rep1-1 | ||
| PRJNA884180 | SRX17748056 | 34.85606 | var. secalinum Yablochny | collenchyma | Col_S1_rep3 | biological replicate 3 | |
| PRJNA884180 | SRX17748057 | 35.126507 | var. secalinum Yablochny | collenchyma | Col_S1_rep4 | biological replicate 4 | |
| PRJNA884180 | SRX17748678 | 36.755474 | var. secalinum Yablochny | parenchyma | Par_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17748679 | 34.614479 | var. secalinum Yablochny | parenchyma | Par_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17748680 | 35.352108 | var. secalinum Yablochny | parenchyma | Par_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17748681 | 32.694614 | var. secalinum Yablochny | parenchyma | Par_S1_rep4 | Biological replicate 4 | |
| PRJNA884180 | SRX17748898 | 42.58548 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17748899 | 40.032597 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17748900 | 47.897404 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17748901 | 36.766018 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep4 | Biological replicate 4 | |
| PRJNA884180 | SRX17749129 | 32.645786 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17749130 | 32.258366 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17749131 | 27.292755 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17749132 | 30.299362 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep4 | Biological replicate 4 | |
| PRJNA1124269 | SRX24936411 | 7.46472 | leaf | CK1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936412 | 9.82055 | leaf | CK2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936413 | 7.70423 | leaf | CK3 | replicate=biological replicate3 | ||
| PRJNA1124269 | SRX24936414 | 16.855888 | leaf | D1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936415 | 16.318434 | leaf | D2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936416 | 18.25132 | leaf | D3 | replicate=biological replicate3 | ||
| PRJNA1124269 | SRX24936417 | 11.671851 | leaf | MD1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936418 | 8.784859 | leaf | MD2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936419 | 8.546728 | leaf | MD3 | replicate=biological replicate3 | ||
| PRJNA387092 | SRX2833309 | 19.655806 | shanghaihuangxin | leaf | leaves between 0.5 and 1 cm in breadth, folded; | stage 2 | |
| PRJNA387092 | SRX2833321 | 27.044687 | shanghaihuangxin | leaf | leaves between 2and 2.5 cm in breadth, nearly unfolded, with clear stem exten-sion | stage 5 | |
| PRJNA387092 | SRX2833323 | 16.040083 | shanghaihuangxin | leaf | leaves >3 cm, unfolded, with clearstem extension | stage 7 | |
| PRJNA543957 | SRX5879598 | 23.367231 | Zhangzhou lvqing | stem | Se3 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879599 | 30.434486 | Zhangzhou lvqing | stem | Se2 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879600 | 17.563761 | Zhangzhou lvqing | stem | Mock2 | mock | |
| PRJNA543957 | SRX5879601 | 18.453804 | Zhangzhou lvqing | stem | Mock1 | mock | |
| PRJNA543957 | SRX5879602 | 27.840345 | Zhangzhou lvqing | stem | Se1 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879603 | 22.538176 | Zhangzhou lvqing | stem | Mock3 | mock | |
| PRJNA609149 | SRX7815917 | 25.977556 | Jinnan Shiqin | flower bud | early flower bud | early flower bud | |
| PRJNA609149 | SRX7815918 | 25.142214 | Jinnan Shiqin | flower bud | middle flower bud | middle flower bud | |
| PRJNA609149 | SRX7815919 | 30.597115 | Jinnan Shiqin | flower bud | early flowering period | early flowering period |
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Acanthaceae | Avicennia marina | 1 | jg8104 |
| Aizoaceae | Mesembryanthemum crystallinum | 1 | gene_5736 |
| Amaranthaceae | Atriplex hortensis | 1 | Ah027745 |
| Amaranthaceae | Beta vulgaris | 1 | BVRB_7g171280 |
| Amaranthaceae | Suaeda aralocaspica | 1 | GOSA_00003459 |
| Amaranthaceae | Suaeda glauca | 2 | Sgl72715, Sgl76254 |
| Amaranthaceae | Chenopodium album | 2 | gene:ENSEOMG00000004865, gene:ENSEOMG00000037459 |
| Amaranthaceae | Chenopodium quinoa | 1 | CQ.Regalona.r1.7AG0005310 |
| Anacardiaceae | Pistacia vera | 2 | pistato.v30055280, pistato.v30063750 |
| Apiaceae | Apium graveolens | 1 | Ag11G04396 |
| Arecaceae | Cocos nucifera | 1 | scaffold000873G000060 |
| Arecaceae | Phoenix dactylifera | 1 | gene-LOC103715707 |
| Asparagaceae | Asparagus officinalis | 1 | AsparagusV1_07.3375.V1.1 |
| Asteraceae | Flaveria trinervia | 1 | Ftri4G14105 |
| Brassicaceae | Arabidopsis thaliana | 1 | AT5G22050.2 |
| Brassicaceae | Eutrema salsugineum | 1 | Thhalv10015417m.g.v1.0 |
| Brassicaceae | Schrenkiella parvula | 1 | Sp6g23140.v2.2 |
| Brassicaceae | Brassica nigra | 1 | BniB08g010990.2N |
| Casuarinaceae | Casuarina equisetifolia | 1 | Ceq05G1891 |
| Casuarinaceae | Casuarina glauca | 3 | Cgl05G1881, Cgl05G1884, Cgl05G1891 |
| Cymodoceaceae | Cymodocea nodosa | 1 | gene.Cymno04g04780 |
| Hydrocharitaceae | Thalassia testudinum | 1 | gene.Thate03g04660 |
| Nitrariaceae | Nitraria sibirica | 1 | evm.TU.LG09.560 |
| Plantaginaceae | Plantago ovata | 1 | Pov_00026584 |
| Plumbaginaceae | Limonium bicolor | 3 | Lb0G37994, Lb3G20272, Lb6G29646 |
| Poaceae | Echinochloa crus-galli | 3 | AH03.276, BH03.354, CH03.427 |
| Poaceae | Eleusine coracana subsp. coracana | 2 | gene-QOZ80_7AG0556120, gene-QOZ80_7BG0587060 |
| Poaceae | Hordeum vulgare | 1 | HORVU.MOREX.r3.2HG0152330.1 |
| Poaceae | Lolium multiflorum | 1 | gene-QYE76_042566 |
| Poaceae | Oryza coarctata | 2 | Oco13G001680, Oco14G001820 |
| Poaceae | Oryza sativa | 1 | LOC_Os07g06570.1 |
| Poaceae | Paspalum vaginatum | 1 | gene-BS78_02G038700 |
| Poaceae | Puccinellia tenuiflora | 1 | Pt_Chr0303553 |
| Poaceae | Sporobolus alterniflorus | 2 | Chr24G001270, Chr28G001130 |
| Poaceae | Thinopyrum elongatum | 1 | Tel2E01G458800 |
| Poaceae | Triticum dicoccoides | 2 | gene_TRIDC2AG033550, gene_TRIDC2BG038470 |
| Poaceae | Triticum aestivum | 3 | TraesCS2A02G249300.2, TraesCS2B02G266100.1 ... |
| Poaceae | Zea mays | 1 | Zm00001eb300310_P001 |
| Poaceae | Zoysia japonica | 1 | nbis-gene-35747 |
| Poaceae | Zoysia macrostachya | 1 | Zma_g4756 |
| Posidoniaceae | Posidonia oceanica | 1 | gene.Posoc01g11650 |
| Rhizophoraceae | Bruguiera sexangula | 1 | evm.TU.Scaffold_12_RagTag.494 |
| Rhizophoraceae | Carallia pectinifolia | 1 | nbisL1-mrna-24247 |
| Rhizophoraceae | Ceriops tagal | 1 | nbisL1-mrna-12703 |
| Rhizophoraceae | Ceriops zippeliana | 1 | nbisL1-mrna-19750 |
| Rhizophoraceae | Kandelia candel | 1 | evm.TU.utg000027l.262 |
| Rhizophoraceae | Kandelia obovata | 1 | Maker00018049 |
| Rhizophoraceae | Rhizophora apiculata | 1 | nbisL1-mrna-5720 |
| Rhizophoraceae | Rhizophora mangle | 1 | nbisL1-mrna-11975 |
| Salicaceae | Populus euphratica | 3 | populus_peu02476, populus_peu35510, populus_peu35517 |
| Solanaceae | Lycium barbarum | 1 | gene-LOC132600662 |
| Solanaceae | Solanum chilense | 1 | SOLCI003294900 |
| Solanaceae | Solanum pennellii | 1 | gene-LOC107004928 |
| Tamaricaceae | Reaumuria soongarica | 1 | gene_3659 |
| Tamaricaceae | Tamarix chinensis | 1 | TC11G1307 |
| Zosteraceae | Zostera marina | 1 | Zosma02g24510.v3.1 |