Basic Information
Locus ID:
Ag11G04361
Species & Taxonomic ID:
Apium graveolens & 4045
Genome Assembly:
GCA_009905375.1
Description:
serine threonine-protein kinase
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr11 | 170611966 | 170616180 | - | Ag11G04361 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.07 | 49,543.98 Da | 58.47 | 78.85 | -0.26 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00069 | Protein kinase domain | 303 | 406 | 5.3E-20 | IPR000719 |
| Pfam | PF00069 | Protein kinase domain | 76 | 238 | 1.6E-34 | IPR000719 |
| SUPERFAMILY | SSF56112 | Protein kinase-like (PK-like) | 61 | 433 | 4.93E-74 | IPR011009 |
| Gene3D | G3DSA:3.30.200.20 | Phosphorylase Kinase; domain 1 | 72 | 159 | 7.3E-45 | - |
| Gene3D | G3DSA:1.10.510.10 | Transferase(Phosphotransferase) domain 1 | 160 | 231 | 7.3E-45 | - |
| Gene3D | G3DSA:1.10.510.10 | Transferase(Phosphotransferase) domain 1 | 302 | 424 | 1.1E-36 | - |
| SMART | SM00220 | serkin_6 | 74 | 406 | 1.8E-74 | IPR000719 |
| ProSiteProfiles | PS50011 | Protein kinase domain profile. | 74 | 406 | 42.675507 | IPR000719 |
| ProSitePatterns | PS00108 | Serine/Threonine protein kinases active-site signature. | 197 | 209 | - | IPR008271 |
Gene Ontology
Biological Process:
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G44610.1 | Protein kinase superfamily protein. | 0 |
| RefSeq | XP_017236799.1 | PREDICTED: serine/threonine-protein kinase D6PKL2 [Daucus carota subsp. sativus] | 0 |
| A2YBX5 | Protein kinase G11A OS=Oryza sativa subsp. indica OX=39946 GN=OsI_021818 PE=2 SV=1 | 0 | |
| TrEMBL | A0A166DJ81 | Protein kinase domain-containing protein OS=Daucus carota subsp. sativus OX=79200 GN=DCAR_006151 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| PRJNA723697 | SRX10692252 | 7.557028 | Shengqin NO.2 | seed | S1-1 | S1-1 | initial formation stage (S1) |
| PRJNA723697 | SRX10692254 | 5.134307 | Shengqin NO.2 | seed | S1-3 | S1-3 | initial formation stage (S1) |
| PRJNA723697 | SRX10692255 | 2.224632 | Shengqin NO.2 | seed | S3-1 | S3-1 | middle development stage (S3) |
| PRJNA723697 | SRX10692256 | 4.288757 | Shengqin NO.2 | seed | S3-2 | S3-2 | middle development stage (S3) |
| PRJNA723697 | SRX10692257 | 3.881261 | Shengqin NO.2 | seed | S3-3 | S3-3 | middle development stage (S3) |
| PRJNA723697 | SRX10692258 | 1.622084 | Shengqin NO.2 | seed | S5-1 | S5-1 | maturation stage (S5) |
| PRJNA723697 | SRX10692259 | 0.741778 | Shengqin NO.2 | seed | S5-2 | S5-2 | maturation stage (S5) |
| PRJNA723697 | SRX10692260 | 1.232683 | Shengqin NO.2 | seed | S5-3 | S5-3 | maturation stage (S5) |
| PRJNA884666 | SRX17729272 | 31.434416 | celery | anther | W99A-r1 | male sterile line | |
| PRJNA884666 | SRX17729273 | 34.594574 | celery | anther | W99A-r2 | male sterile line | |
| PRJNA884666 | SRX17729274 | 34.048553 | celery | anther | W99A-r3 | male sterile line | |
| PRJNA884666 | SRX17729275 | 22.768023 | celery | anther | W99B-r1 | maintainer line | |
| PRJNA884666 | SRX17729276 | 29.425835 | celery | anther | W99B-r2 | maintainer line | |
| PRJNA884666 | SRX17729277 | 30.269424 | celery | anther | W99B-r3 | maintainer line | |
| PRJNA884180 | SRX17743889 | 13.232217 | var. secalinum Yablochny | collenchyma | Col_S1_rep1-1 | ||
| PRJNA884180 | SRX17748056 | 10.889989 | var. secalinum Yablochny | collenchyma | Col_S1_rep3 | biological replicate 3 | |
| PRJNA884180 | SRX17748057 | 16.830402 | var. secalinum Yablochny | collenchyma | Col_S1_rep4 | biological replicate 4 | |
| PRJNA884180 | SRX17748678 | 16.634512 | var. secalinum Yablochny | parenchyma | Par_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17748679 | 13.96509 | var. secalinum Yablochny | parenchyma | Par_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17748680 | 16.950447 | var. secalinum Yablochny | parenchyma | Par_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17748681 | 18.514338 | var. secalinum Yablochny | parenchyma | Par_S1_rep4 | Biological replicate 4 | |
| PRJNA884180 | SRX17748898 | 6.628296 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17748899 | 6.594613 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17748900 | 6.536003 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17748901 | 8.405785 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep4 | Biological replicate 4 | |
| PRJNA884180 | SRX17749129 | 16.089449 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17749130 | 24.963137 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17749131 | 13.861738 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17749132 | 20.316925 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep4 | Biological replicate 4 | |
| PRJNA1124269 | SRX24936411 | 28.873852 | leaf | CK1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936412 | 19.374647 | leaf | CK2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936413 | 24.254337 | leaf | CK3 | replicate=biological replicate3 | ||
| PRJNA1124269 | SRX24936414 | 6.689588 | leaf | D1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936415 | 5.138619 | leaf | D2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936416 | 2.929681 | leaf | D3 | replicate=biological replicate3 | ||
| PRJNA1124269 | SRX24936417 | 9.964038 | leaf | MD1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936418 | 27.428467 | leaf | MD2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936419 | 22.474569 | leaf | MD3 | replicate=biological replicate3 | ||
| PRJNA387092 | SRX2833309 | 7.014977 | shanghaihuangxin | leaf | leaves between 0.5 and 1 cm in breadth, folded; | stage 2 | |
| PRJNA387092 | SRX2833321 | 13.849685 | shanghaihuangxin | leaf | leaves between 2and 2.5 cm in breadth, nearly unfolded, with clear stem exten-sion | stage 5 | |
| PRJNA387092 | SRX2833323 | 16.570629 | shanghaihuangxin | leaf | leaves >3 cm, unfolded, with clearstem extension | stage 7 | |
| PRJNA543957 | SRX5879598 | 0.332207 | Zhangzhou lvqing | stem | Se3 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879599 | 2.596682 | Zhangzhou lvqing | stem | Se2 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879600 | 5.056471 | Zhangzhou lvqing | stem | Mock2 | mock | |
| PRJNA543957 | SRX5879601 | 2.620495 | Zhangzhou lvqing | stem | Mock1 | mock | |
| PRJNA543957 | SRX5879602 | 0.801372 | Zhangzhou lvqing | stem | Se1 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879603 | 3.805311 | Zhangzhou lvqing | stem | Mock3 | mock | |
| PRJNA609149 | SRX7815917 | 7.382213 | Jinnan Shiqin | flower bud | early flower bud | early flower bud | |
| PRJNA609149 | SRX7815918 | 7.133633 | Jinnan Shiqin | flower bud | middle flower bud | middle flower bud | |
| PRJNA609149 | SRX7815919 | 5.952318 | Jinnan Shiqin | flower bud | early flowering period | early flowering period |
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Acanthaceae | Avicennia marina | 4 | jg14488, jg16459, jg35983, jg8164 |
| Aizoaceae | Mesembryanthemum crystallinum | 1 | gene_6785 |
| Amaranthaceae | Beta vulgaris | 1 | BVRB_7g176500 |
| Amaranthaceae | Salicornia bigelovii | 2 | Sbi_jg26990, Sbi_jg33563 |
| Amaranthaceae | Salicornia europaea | 1 | Seu_jg8268 |
| Amaranthaceae | Suaeda glauca | 2 | Sgl73275, Sgl76796 |
| Amaranthaceae | Chenopodium album | 2 | gene:ENSEOMG00000035884, gene:ENSEOMG00000037471 |
| Amaranthaceae | Chenopodium quinoa | 2 | CQ.Regalona.r1.7AG0000570, CQ.Regalona.r1.9BG0005230 |
| Anacardiaceae | Pistacia vera | 1 | pistato.v30169800 |
| Apiaceae | Apium graveolens | 2 | Ag11G04361, Ag11G04531 |
| Arecaceae | Cocos nucifera | 1 | scaffold028293G000020 |
| Arecaceae | Phoenix dactylifera | 1 | gene-LOC103706093 |
| Asparagaceae | Asparagus officinalis | 1 | AsparagusV1_09.8.V1.1 |
| Asteraceae | Flaveria trinervia | 3 | Ftri17G30657, Ftri2G30797, Ftri6G28322 |
| Brassicaceae | Arabidopsis thaliana | 1 | AT3G44610.1 |
| Brassicaceae | Eutrema salsugineum | 1 | Thhalv10002527m.g.v1.0 |
| Brassicaceae | Schrenkiella parvula | 1 | Sp5g16590.v2.2 |
| Brassicaceae | Brassica nigra | 1 | BniB08g057660.2N |
| Casuarinaceae | Casuarina equisetifolia | 1 | Ceq05G1202 |
| Casuarinaceae | Casuarina glauca | 1 | Cgl05G1213 |
| Cymodoceaceae | Cymodocea nodosa | 1 | gene.Cymno08g08750 |
| Hydrocharitaceae | Thalassia testudinum | 1 | gene.Thate02g16160 |
| Nitrariaceae | Nitraria sibirica | 2 | evm.TU.LG02.1265, evm.TU.LG09.720 |
| Plantaginaceae | Plantago ovata | 2 | Pov_00015839, Pov_00019409 |
| Plumbaginaceae | Limonium bicolor | 1 | Lb3G19630 |
| Poaceae | Echinochloa crus-galli | 3 | AH05.198, BH05.228, CH05.281 |
| Poaceae | Eleusine coracana subsp. coracana | 4 | gene-QOZ80_5AG0381550, gene-QOZ80_5BG0428570 ... |
| Poaceae | Hordeum vulgare | 1 | HORVU.MOREX.r3.5HG0459810.1 |
| Poaceae | Lolium multiflorum | 2 | gene-QYE76_003003, gene-QYE76_003104 |
| Poaceae | Oryza coarctata | 4 | Oco21G001170, Oco22G002030, Oco23G001800, Oco24G001330 |
| Poaceae | Oryza sativa | 2 | LOC_Os11g05320.1, LOC_Os12g05394.1 |
| Poaceae | Paspalum vaginatum | 1 | gene-BS78_08G024100 |
| Poaceae | Puccinellia tenuiflora | 2 | Pt_Chr0703188, Pt_Chr0703231 |
| Poaceae | Sporobolus alterniflorus | 3 | Chr04G022170, Chr06G023890, Chr07G021330 |
| Poaceae | Thinopyrum elongatum | 1 | Tel5E01G234900 |
| Poaceae | Triticum dicoccoides | 2 | gene_TRIDC5AG022020, gene_TRIDC5BG022510 |
| Poaceae | Triticum aestivum | 3 | TraesCS5A02G129700.1, TraesCS5B02G128400.1 ... |
| Poaceae | Zea mays | 1 | Zm00001eb262760_P001 |
| Poaceae | Zoysia japonica | 1 | nbis-gene-25650 |
| Poaceae | Zoysia macrostachya | 3 | Zma_g18414, Zma_g24734, Zma_g30363 |
| Portulacaceae | Portulaca oleracea | 2 | evm.TU.LG19.354, evm.TU.LG24.188 |
| Posidoniaceae | Posidonia oceanica | 1 | gene.Posoc05g22670 |
| Rhizophoraceae | Bruguiera sexangula | 4 | evm.TU.60361.17, evm.TU.60362.16 ... |
| Rhizophoraceae | Carallia pectinifolia | 2 | nbisL1-mrna-30638, nbisL1-mrna-6571 |
| Rhizophoraceae | Ceriops tagal | 2 | nbisL1-mrna-13426, nbisL1-mrna-572 |
| Rhizophoraceae | Ceriops zippeliana | 2 | nbisL1-mrna-21029, nbisL1-mrna-21171 |
| Rhizophoraceae | Kandelia candel | 2 | evm.TU.utg000015l.237, evm.TU.utg000016l.899 |
| Rhizophoraceae | Kandelia obovata | 1 | Maker00015670 |
| Rhizophoraceae | Rhizophora apiculata | 2 | nbisL1-mrna-11081, nbisL1-mrna-4166 |
| Rhizophoraceae | Rhizophora mangle | 2 | nbisL1-mrna-21767, nbisL1-mrna-22149 |
| Salicaceae | Populus euphratica | 4 | populus_peu06121, populus_peu08585, populus_peu19983 ... |
| Solanaceae | Lycium barbarum | 2 | gene-LOC132600553, gene-LOC132614031 |
| Solanaceae | Solanum chilense | 2 | SOLCI003372600, SOLCI006099300 |
| Solanaceae | Solanum pennellii | 2 | gene-LOC107003029, gene-LOC107003284 |
| Tamaricaceae | Reaumuria soongarica | 1 | gene_14710 |
| Tamaricaceae | Tamarix chinensis | 1 | TC01G3576 |
| Zosteraceae | Zostera marina | 1 | Zosma04g24400.v3.1 |