Basic Information
Locus ID:
Ag11G04360
Species & Taxonomic ID:
Apium graveolens & 4045
Genome Assembly:
GCA_009905375.1
Description:
Peptidylprolyl isomerase domain and WD repeat-containing protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr11 | 170546972 | 170563043 | - | Ag11G04360 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.96 | 70,833.74 Da | 48.13 | 80.93 | -0.43 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd01927 | cyclophilin_WD40 | 475 | 622 | 2.05091E-109 | - |
| Pfam | PF00160 | Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD | 474 | 624 | 3.6E-54 | IPR002130 |
| Pfam | PF00400 | WD domain, G-beta repeat | 103 | 137 | 0.036 | IPR001680 |
| SUPERFAMILY | SSF50978 | WD40 repeat-like | 67 | 295 | 6.66E-30 | IPR036322 |
| SUPERFAMILY | SSF50891 | Cyclophilin-like | 471 | 624 | 8.47E-67 | IPR029000 |
| Gene3D | G3DSA:2.40.100.10 | - | 461 | 626 | 1.0E-74 | IPR029000 |
| Gene3D | G3DSA:2.130.10.10 | - | 52 | 326 | 3.3E-23 | IPR015943 |
| SMART | SM00320 | WD40_4 | 188 | 227 | 86.0 | IPR001680 |
| SMART | SM00320 | WD40_4 | 235 | 283 | 3.3 | IPR001680 |
| SMART | SM00320 | WD40_4 | 98 | 137 | 0.012 | IPR001680 |
| SMART | SM00320 | WD40_4 | 56 | 93 | 0.0084 | IPR001680 |
| ProSiteProfiles | PS50072 | Cyclophilin-type peptidyl-prolyl cis-trans isomerase domain profile. | 470 | 624 | 36.119854 | IPR002130 |
| ProSitePatterns | PS00170 | Cyclophilin-type peptidyl-prolyl cis-trans isomerase signature. | 508 | 525 | - | IPR020892 |
| PRINTS | PR00153 | Cyclophilin peptidyl-prolyl cis-trans isomerase signature | 513 | 525 | 2.1E-30 | IPR002130 |
| PRINTS | PR00153 | Cyclophilin peptidyl-prolyl cis-trans isomerase signature | 584 | 599 | 2.1E-30 | IPR002130 |
| PRINTS | PR00153 | Cyclophilin peptidyl-prolyl cis-trans isomerase signature | 487 | 502 | 2.1E-30 | IPR002130 |
| PRINTS | PR00153 | Cyclophilin peptidyl-prolyl cis-trans isomerase signature | 556 | 571 | 2.1E-30 | IPR002130 |
| PRINTS | PR00153 | Cyclophilin peptidyl-prolyl cis-trans isomerase signature | 571 | 583 | 2.1E-30 | IPR002130 |
Gene Ontology
Biological Process:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G44600.1 | cyclophilin71. Cyclophilin71 is a WD40 domain cyclophilin, which functions in gene repression, organogenesis and meristem development. CYP71 physically interacts with histone H3. | 0 |
| RefSeq | XP_017236573.1 | PREDICTED: peptidyl-prolyl cis-trans isomerase CYP71 [Daucus carota subsp. sativus] | 0 |
| Q8W4D0 | Peptidyl-prolyl cis-trans isomerase CYP71 OS=Arabidopsis thaliana OX=3702 GN=CYP71 PE=1 SV=1 | 0 | |
| TrEMBL | A0A5B7BUP4 | Putative peptidyl-prolyl cis-trans isomerase CYP71 OS=Davidia involucrata OX=16924 GN=Din_041605 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| PRJNA723697 | SRX10692252 | 9.680796 | Shengqin NO.2 | seed | S1-1 | S1-1 | initial formation stage (S1) |
| PRJNA723697 | SRX10692254 | 5.821048 | Shengqin NO.2 | seed | S1-3 | S1-3 | initial formation stage (S1) |
| PRJNA723697 | SRX10692255 | 4.924596 | Shengqin NO.2 | seed | S3-1 | S3-1 | middle development stage (S3) |
| PRJNA723697 | SRX10692256 | 5.671299 | Shengqin NO.2 | seed | S3-2 | S3-2 | middle development stage (S3) |
| PRJNA723697 | SRX10692257 | 5.188256 | Shengqin NO.2 | seed | S3-3 | S3-3 | middle development stage (S3) |
| PRJNA723697 | SRX10692258 | 6.135406 | Shengqin NO.2 | seed | S5-1 | S5-1 | maturation stage (S5) |
| PRJNA723697 | SRX10692259 | 5.462871 | Shengqin NO.2 | seed | S5-2 | S5-2 | maturation stage (S5) |
| PRJNA723697 | SRX10692260 | 4.76032 | Shengqin NO.2 | seed | S5-3 | S5-3 | maturation stage (S5) |
| PRJNA884666 | SRX17729272 | 23.497726 | celery | anther | W99A-r1 | male sterile line | |
| PRJNA884666 | SRX17729273 | 25.046974 | celery | anther | W99A-r2 | male sterile line | |
| PRJNA884666 | SRX17729274 | 28.058517 | celery | anther | W99A-r3 | male sterile line | |
| PRJNA884666 | SRX17729275 | 27.386936 | celery | anther | W99B-r1 | maintainer line | |
| PRJNA884666 | SRX17729276 | 25.389952 | celery | anther | W99B-r2 | maintainer line | |
| PRJNA884666 | SRX17729277 | 22.711002 | celery | anther | W99B-r3 | maintainer line | |
| PRJNA884180 | SRX17743889 | 8.260426 | var. secalinum Yablochny | collenchyma | Col_S1_rep1-1 | ||
| PRJNA884180 | SRX17748056 | 9.526884 | var. secalinum Yablochny | collenchyma | Col_S1_rep3 | biological replicate 3 | |
| PRJNA884180 | SRX17748057 | 8.335766 | var. secalinum Yablochny | collenchyma | Col_S1_rep4 | biological replicate 4 | |
| PRJNA884180 | SRX17748678 | 11.697982 | var. secalinum Yablochny | parenchyma | Par_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17748679 | 9.942785 | var. secalinum Yablochny | parenchyma | Par_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17748680 | 9.943211 | var. secalinum Yablochny | parenchyma | Par_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17748681 | 10.705398 | var. secalinum Yablochny | parenchyma | Par_S1_rep4 | Biological replicate 4 | |
| PRJNA884180 | SRX17748898 | 12.608567 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17748899 | 13.363012 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17748900 | 15.214946 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17748901 | 14.839189 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep4 | Biological replicate 4 | |
| PRJNA884180 | SRX17749129 | 10.414921 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17749130 | 11.540844 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17749131 | 12.061358 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17749132 | 13.714585 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep4 | Biological replicate 4 | |
| PRJNA1124269 | SRX24936411 | 2.408415 | leaf | CK1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936412 | 3.573818 | leaf | CK2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936413 | 2.965189 | leaf | CK3 | replicate=biological replicate3 | ||
| PRJNA1124269 | SRX24936414 | 6.369648 | leaf | D1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936415 | 11.758636 | leaf | D2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936416 | 7.135958 | leaf | D3 | replicate=biological replicate3 | ||
| PRJNA1124269 | SRX24936417 | 4.113121 | leaf | MD1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936418 | 2.94836 | leaf | MD2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936419 | 2.477942 | leaf | MD3 | replicate=biological replicate3 | ||
| PRJNA387092 | SRX2833309 | 12.70126 | shanghaihuangxin | leaf | leaves between 0.5 and 1 cm in breadth, folded; | stage 2 | |
| PRJNA387092 | SRX2833321 | 7.332896 | shanghaihuangxin | leaf | leaves between 2and 2.5 cm in breadth, nearly unfolded, with clear stem exten-sion | stage 5 | |
| PRJNA387092 | SRX2833323 | 6.845355 | shanghaihuangxin | leaf | leaves >3 cm, unfolded, with clearstem extension | stage 7 | |
| PRJNA543957 | SRX5879598 | 7.660803 | Zhangzhou lvqing | stem | Se3 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879599 | 5.55069 | Zhangzhou lvqing | stem | Se2 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879600 | 7.633407 | Zhangzhou lvqing | stem | Mock2 | mock | |
| PRJNA543957 | SRX5879601 | 7.869161 | Zhangzhou lvqing | stem | Mock1 | mock | |
| PRJNA543957 | SRX5879602 | 9.264586 | Zhangzhou lvqing | stem | Se1 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879603 | 7.907467 | Zhangzhou lvqing | stem | Mock3 | mock | |
| PRJNA609149 | SRX7815917 | 18.107761 | Jinnan Shiqin | flower bud | early flower bud | early flower bud | |
| PRJNA609149 | SRX7815918 | 16.880665 | Jinnan Shiqin | flower bud | middle flower bud | middle flower bud | |
| PRJNA609149 | SRX7815919 | 16.30694 | Jinnan Shiqin | flower bud | early flowering period | early flowering period |
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Acanthaceae | Avicennia marina | 1 | jg16458 |
| Aizoaceae | Mesembryanthemum crystallinum | 1 | gene_6786 |
| Amaranthaceae | Atriplex hortensis | 1 | Ah028918 |
| Amaranthaceae | Beta vulgaris | 1 | BVRB_7g176490 |
| Amaranthaceae | Salicornia bigelovii | 2 | Sbi_jg26988, Sbi_jg33564 |
| Amaranthaceae | Salicornia europaea | 1 | Seu_jg8269 |
| Amaranthaceae | Suaeda aralocaspica | 1 | GOSA_00002941 |
| Amaranthaceae | Suaeda glauca | 1 | Sgl73277 |
| Amaranthaceae | Chenopodium album | 3 | gene:ENSEOMG00000004761, gene:ENSEOMG00000035535 ... |
| Amaranthaceae | Chenopodium quinoa | 2 | CQ.Regalona.r1.7AG0000580, CQ.Regalona.r1.9BG0005220 |
| Anacardiaceae | Pistacia vera | 1 | pistato.v30056970 |
| Apiaceae | Apium graveolens | 1 | Ag11G04360 |
| Arecaceae | Cocos nucifera | 1 | COCNU_02G016330 |
| Arecaceae | Phoenix dactylifera | 1 | gene-LOC103715399 |
| Asparagaceae | Asparagus officinalis | 1 | AsparagusV1_04.628.V1.1 |
| Asteraceae | Flaveria trinervia | 1 | Ftri2G19380 |
| Brassicaceae | Arabidopsis thaliana | 1 | AT3G44600.1 |
| Brassicaceae | Eutrema salsugineum | 1 | Thhalv10002440m.g.v1.0 |
| Brassicaceae | Schrenkiella parvula | 1 | Sp5g16610.v2.2 |
| Brassicaceae | Brassica nigra | 1 | BniB08g057590.2N |
| Casuarinaceae | Casuarina equisetifolia | 1 | Ceq05G1769 |
| Casuarinaceae | Casuarina glauca | 1 | Cgl05G1759 |
| Cymodoceaceae | Cymodocea nodosa | 1 | gene.Cymno04g00110 |
| Dunaliellaceae | Dunaliella salina | 1 | Dusal.1280s00002.v1.0 |
| Hydrocharitaceae | Thalassia testudinum | 1 | gene.Thate09g02490 |
| Nitrariaceae | Nitraria sibirica | 1 | evm.TU.LG09.719 |
| Plantaginaceae | Plantago ovata | 1 | Pov_00015838 |
| Plumbaginaceae | Limonium bicolor | 2 | Lb1G00709, Lb3G19857 |
| Poaceae | Echinochloa crus-galli | 3 | AH08.2365, BH08.2539, CH08.2710 |
| Poaceae | Eleusine coracana subsp. coracana | 2 | gene-QOZ80_8AG0640560, gene-QOZ80_8BG0669170 |
| Poaceae | Hordeum vulgare | 1 | HORVU.MOREX.r3.7HG0688880.1 |
| Poaceae | Lolium multiflorum | 1 | gene-QYE76_030729 |
| Poaceae | Oryza coarctata | 2 | Oco15G014520, Oco16G013790 |
| Poaceae | Oryza sativa | 1 | LOC_Os08g44330.1 |
| Poaceae | Paspalum vaginatum | 1 | gene-BS78_07G225600 |
| Poaceae | Puccinellia tenuiflora | 1 | Pt_Chr0403386 |
| Poaceae | Sporobolus alterniflorus | 2 | Chr20G003220, Chr29G000430 |
| Poaceae | Thinopyrum elongatum | 1 | Tel7E01G480200 |
| Poaceae | Triticum dicoccoides | 2 | gene_TRIDC7AG036430, gene_TRIDC7BG027710 |
| Poaceae | Triticum aestivum | 3 | TraesCS7A02G277700.1, TraesCS7B02G175400.1 ... |
| Poaceae | Zea mays | 1 | Zm00001eb176200_P001 |
| Poaceae | Zoysia macrostachya | 1 | Zma_g24522 |
| Portulacaceae | Portulaca oleracea | 2 | evm.TU.LG03.1612, evm.TU.LG12.282 |
| Posidoniaceae | Posidonia oceanica | 1 | gene.Posoc01g00170 |
| Rhizophoraceae | Bruguiera sexangula | 1 | evm.TU.Scaffold_12_RagTag.570 |
| Rhizophoraceae | Carallia pectinifolia | 1 | nbisL1-mrna-24168 |
| Rhizophoraceae | Ceriops tagal | 1 | nbisL1-mrna-14407 |
| Rhizophoraceae | Ceriops zippeliana | 1 | nbisL1-mrna-19858 |
| Rhizophoraceae | Kandelia candel | 1 | evm.TU.utg000027l.220 |
| Rhizophoraceae | Kandelia obovata | 1 | Maker00018246 |
| Rhizophoraceae | Rhizophora apiculata | 1 | nbisL1-mrna-5763 |
| Rhizophoraceae | Rhizophora mangle | 1 | nbisL1-mrna-12045 |
| Salicaceae | Populus euphratica | 1 | populus_peu36751 |
| Solanaceae | Lycium barbarum | 1 | gene-LOC132600564 |
| Solanaceae | Solanum chilense | 1 | SOLCI003372500 |
| Solanaceae | Solanum pennellii | 1 | gene-LOC107005059 |
| Tamaricaceae | Reaumuria soongarica | 1 | gene_9531 |
| Tamaricaceae | Tamarix chinensis | 1 | TC03G1831 |
| Zosteraceae | Zostera marina | 1 | Zosma01g20030.v3.1 |