halophFGD

Basic Information

Locus ID: Ag11G04355

Species & Taxonomic ID: Apium graveolens & 4045

Genome Assembly: GCA_009905375.1

Short Name: PSK3

Description: Phytosulfokine precursor protein (PSK)

Maps and Mapping Data

Chromosome	Start	End	Strand	ID
chr11	169987864	169988855	-	Ag11G04355

Protein Data

Protein Properties:

Theoretical pI	Molecular Weight	Instability Index	Aliphatic Index	GRAVY
5.52	9,900.18 Da	60.74	82.79	-0.45

Protein Domain:

Category	ID	Description	Start	End	Evalue/Score	InterPro ID
Pfam	PF06404	Phytosulfokine precursor protein (PSK)	10	85	5.6E-19	IPR009438

Gene Ontology

Biological Process:

GO:0008283 (cell population proliferation)

Molecular Function:

GO:0008083 (growth factor activity)

Cellular Component:

GO:0005576 (extracellular region)

Best hit

Source	Best Hit ID	Description
TAIR	AT3G44735.1	PHYTOSULFOKINE 3 PRECURSOR. Phytosulfokine 3 precursor, coding for a unique plant peptide growth factor.
RefSeq	XP_017233959.1	PREDICTED: putative phytosulfokines 6 [Daucus carota subsp. sativus]
Swiss-Prot	Q8LA14	Putative phytosulfokines 6 OS=Arabidopsis thaliana OX=3702 GN=PSK6 PE=2 SV=2
TrEMBL	A0A166DIT0	Phytosulfokine OS=Daucus carota subsp. sativus OX=79200 GN=DCAR_006146 PE=3 SV=1

Expression

BioProject	Accession	TPM	Cultivar	Tissue	Development Stage	Sample Name	Description
PRJNA723697	SRX10692252	57.689358	Shengqin NO.2	seed	S1-1	S1-1	initial formation stage (S1)
PRJNA723697	SRX10692254	72.107697	Shengqin NO.2	seed	S1-3	S1-3	initial formation stage (S1)
PRJNA723697	SRX10692255	60.129169	Shengqin NO.2	seed	S3-1	S3-1	middle development stage (S3)
PRJNA723697	SRX10692256	76.493324	Shengqin NO.2	seed	S3-2	S3-2	middle development stage (S3)
PRJNA723697	SRX10692257	69.023651	Shengqin NO.2	seed	S3-3	S3-3	middle development stage (S3)
PRJNA723697	SRX10692258	43.206276	Shengqin NO.2	seed	S5-1	S5-1	maturation stage (S5)
PRJNA723697	SRX10692259	34.683144	Shengqin NO.2	seed	S5-2	S5-2	maturation stage (S5)
PRJNA723697	SRX10692260	12.278335	Shengqin NO.2	seed	S5-3	S5-3	maturation stage (S5)
PRJNA884666	SRX17729272	190.453964	celery	anther		W99A-r1	male sterile lineÂ
PRJNA884666	SRX17729273	171.118149	celery	anther		W99A-r2	male sterile lineÂ
PRJNA884666	SRX17729274	161.272736	celery	anther		W99A-r3	male sterile lineÂ
PRJNA884666	SRX17729275	162.915192	celery	anther		W99B-r1	maintainer line
PRJNA884666	SRX17729276	178.93895	celery	anther		W99B-r2	maintainer line
PRJNA884666	SRX17729277	181.337479	celery	anther		W99B-r3	maintainer line
PRJNA884180	SRX17743889	10.558571	var. secalinum Yablochny	collenchyma		Col_S1_rep1-1
PRJNA884180	SRX17748056	36.370895	var. secalinum Yablochny	collenchyma		Col_S1_rep3	biological replicate 3
PRJNA884180	SRX17748057	142.231293	var. secalinum Yablochny	collenchyma		Col_S1_rep4	biological replicate 4
PRJNA884180	SRX17748678	80.949776	var. secalinum Yablochny	parenchyma		Par_S1_rep1	Biological replicate 1
PRJNA884180	SRX17748679	74.151649	var. secalinum Yablochny	parenchyma		Par_S1_rep2	Biological replicate 2
PRJNA884180	SRX17748680	125.000923	var. secalinum Yablochny	parenchyma		Par_S1_rep3	Biological replicate 3
PRJNA884180	SRX17748681	89.866272	var. secalinum Yablochny	parenchyma		Par_S1_rep4	Biological replicate 4
PRJNA884180	SRX17748898	717.341858	var. secalinum Yablochny	vascular bundle		Vas_S1_rep1	Biological replicate 1
PRJNA884180	SRX17748899	859.83844	var. secalinum Yablochny	vascular bundle		Vas_S1_rep2	Biological replicate 2
PRJNA884180	SRX17748900	573.611938	var. secalinum Yablochny	vascular bundle		Vas_S1_rep3	Biological replicate 3
PRJNA884180	SRX17748901	551.344604	var. secalinum Yablochny	vascular bundle		Vas_S1_rep4	Biological replicate 4
PRJNA884180	SRX17749129	194.47142	var. secalinum Yablochny	part of the celery petiole without collenchyma strands		Collenchyma-free_S1_rep1	Biological replicate 1
PRJNA884180	SRX17749130	145.121048	var. secalinum Yablochny	part of the celery petiole without collenchyma strands		Collenchyma-free_S1_rep2	Biological replicate 2
PRJNA884180	SRX17749131	201.060699	var. secalinum Yablochny	part of the celery petiole without collenchyma strands		Collenchyma-free_S1_rep3	Biological replicate 3
PRJNA884180	SRX17749132	187.334076	var. secalinum Yablochny	part of the celery petiole without collenchyma strands		Collenchyma-free_S1_rep4	Biological replicate 4
PRJNA1124269	SRX24936411	39.566971		leaf		CK1	replicate=biological replicate1
PRJNA1124269	SRX24936412	31.499975		leaf		CK2	replicate=biological replicate2
PRJNA1124269	SRX24936413	34.399216		leaf		CK3	replicate=biological replicate3
PRJNA1124269	SRX24936414	92.075439		leaf		D1	replicate=biological replicate1
PRJNA1124269	SRX24936415	200.818344		leaf		D2	replicate=biological replicate2
PRJNA1124269	SRX24936416	100.635635		leaf		D3	replicate=biological replicate3
PRJNA1124269	SRX24936417	46.495281		leaf		MD1	replicate=biological replicate1
PRJNA1124269	SRX24936418	46.445911		leaf		MD2	replicate=biological replicate2
PRJNA1124269	SRX24936419	39.834812		leaf		MD3	replicate=biological replicate3
PRJNA387092	SRX2833309	82.835861	shanghaihuangxin	leaf	leaves between 0.5 and 1 cm in breadth, folded;	stage 2
PRJNA387092	SRX2833321	121.271553	shanghaihuangxin	leaf	leaves between 2and 2.5 cm in breadth, nearly unfolded, with clear stem exten-sion	stage 5
PRJNA387092	SRX2833323	67.990517	shanghaihuangxin	leaf	leaves >3 cm, unfolded, with clearstem extension	stage 7
PRJNA543957	SRX5879598	47.043087	Zhangzhou lvqing	stem		Se3	100 ppm Na2SeO4
PRJNA543957	SRX5879599	120.546822	Zhangzhou lvqing	stem		Se2	100 ppm Na2SeO4
PRJNA543957	SRX5879600	217.761017	Zhangzhou lvqing	stem		Mock2	mock
PRJNA543957	SRX5879601	510.245514	Zhangzhou lvqing	stem		Mock1	mock
PRJNA543957	SRX5879602	75.364441	Zhangzhou lvqing	stem		Se1	100 ppm Na2SeO4
PRJNA543957	SRX5879603	91.984581	Zhangzhou lvqing	stem		Mock3	mock
PRJNA609149	SRX7815917	442.648621	Jinnan Shiqin	flower bud	early flower bud	early flower bud
PRJNA609149	SRX7815918	516.943726	Jinnan Shiqin	flower bud	middle flower bud	middle flower bud
PRJNA609149	SRX7815919	550.031433	Jinnan Shiqin	flower bud	early flowering period	early flowering period

Network

🔍 Co-expression Network

🔍 Protein-Protein Interaction Network

Orthology

Family	Species	Count	Orthologous Genes
Acanthaceae	Avicennia marina	8	jg16480, jg17343, jg26300, jg28589, jg30195, jg31974, jg8174 ... jg39917
Aizoaceae	Mesembryanthemum crystallinum	4	gene_14411, gene_21244, gene_21475, gene_24019
Amaranthaceae	Atriplex hortensis	5	Ah011439, Ah027509, Ah030902, Ah036797, Ah039502
Amaranthaceae	Beta vulgaris	3	BVRB_1g014760, BVRB_6g128430, BVRB_7g160220
Amaranthaceae	Salicornia bigelovii	8	Sbi_jg11884, Sbi_jg13205, Sbi_jg27442, Sbi_jg33177 ... Sbi_jg39641, Sbi_jg46821, Sbi_jg52591, Sbi_jg54694
Amaranthaceae	Salicornia europaea	5	Seu_jg14678, Seu_jg21123, Seu_jg27919, Seu_jg7907 ... Seu_jg9206
Amaranthaceae	Suaeda aralocaspica	4	GOSA_00005048, GOSA_00010082, GOSA_00012288, GOSA_00013214
Amaranthaceae	Suaeda glauca	10	Sgl12556, Sgl17829, Sgl34565, Sgl39979, Sgl55316, Sgl60572 ... Sgl60663, Sgl71394, Sgl74983, Sgl80245
Amaranthaceae	Chenopodium album	6	gene:ENSEOMG00000002455, gene:ENSEOMG00000028289 ... gene:ENSEOMG00000033950, gene:ENSEOMG00000038678, gene:ENSEOMG00000048031, gene:ENSEOMG00000052607
Amaranthaceae	Chenopodium quinoa	8	CQ.Regalona.r1.1AG0020890, CQ.Regalona.r1.1BG0007320 ... CQ.Regalona.r1.6AG0016160, CQ.Regalona.r1.6AG0026520, CQ.Regalona.r1.7AG0019660, CQ.Regalona.r1.7BG0022300, CQ.Regalona.r1.9AG0010830, CQ.Regalona.r1.9BG0011560
Anacardiaceae	Pistacia vera	1	pistato.v30010920
Apiaceae	Apium graveolens	5	Ag11G04355, Ag3G00067, Ag3G00110, Ag4G01159, Ag6G01297
Arecaceae	Cocos nucifera	4	COCNU_02G009670, COCNU_15G000260, contig69610073G000010 ... scaffold076924G000010
Arecaceae	Phoenix dactylifera	5	gene-LOC103712283, gene-LOC103713684, gene-LOC103717692 ... gene-LOC103719854, gene-LOC120112106
Asparagaceae	Asparagus officinalis	3	AsparagusV1_02.873.V1.1, AsparagusV1_03.788.V1.1 ... AsparagusV1_07.3060.V1.1
Asteraceae	Flaveria trinervia	8	Ftri13G25154, Ftri14G27430, Ftri16G24836, Ftri17G30563 ... Ftri18G14278, Ftri18G24896, Ftri18G32910, Ftri4G15130
Brassicaceae	Arabidopsis thaliana	7	AT1G13590.1, AT2G22860.1, AT2G22942.1, AT3G44735.1 ... AT3G49780.1, AT4G37720.1, AT5G65870.1
Brassicaceae	Eutrema salsugineum	8	Thhalv10000380m.g.v1.0, Thhalv10000381m.g.v1.0 ... Thhalv10002908m.g.v1.0, Thhalv10005224m.g.v1.0, Thhalv10009205m.g.v1.0, Thhalv10010875m.g.v1.0, Thhalv10015130m.g.v1.0, Thhalv10026843m.g.v1.0
Brassicaceae	Schrenkiella parvula	8	Sp1g11970.v2.2, Sp2g28960.v2.2, Sp4g01910.v2.2 ... Sp4g01960.v2.2, Sp5g12310.v2.2, Sp5g16440.v2.2, Sp6g39010.v2.2, Sp7g35370.v2.2
Brassicaceae	Brassica nigra	13	BniB01g020970.2N, BniB02g008530.2N, BniB02g019690.2N ... BniB02g056830.2N, BniB02g088760.2N, BniB03g010010.2N, BniB03g014410.2N, BniB04g000590.2N, BniB05g047860.2N, BniB05g051280.2N, BniB06g014170.2N, BniB06g038310.2N, BniB08g063500.2N
Casuarinaceae	Casuarina equisetifolia	5	Ceq02G1492, Ceq05G0025, Ceq05G0029, Ceq05G1727, Ceq09G0469
Casuarinaceae	Casuarina glauca	4	Cgl02G1548, Cgl05G0026, Cgl05G1729, Cgl09G0505
Cymodoceaceae	Cymodocea nodosa	3	gene.Cymno06g00660, gene.Cymno07g10660, gene.Cymno10g09040
Hydrocharitaceae	Thalassia testudinum	4	gene.Thate02g16360, gene.Thate02g30960, gene.Thate06g13670 ... gene.Thate08g21300
Malvaceae	Hibiscus hamabo Siebold & Zucc.	5	nbisL1-mrna-10086, nbisL1-mrna-10116, nbisL1-mrna-10577 ... nbisL1-mrna-5199, nbisL1-mrna-8568
Nitrariaceae	Nitraria sibirica	6	evm.TU.LG01.2130, evm.TU.LG02.2591, evm.TU.LG03.452 ... evm.TU.LG06.313, evm.TU.LG08.631, evm.TU.LG09.759
Plantaginaceae	Plantago ovata	4	Pov_00004911, Pov_00012076, Pov_00015859, Pov_00023754
Plumbaginaceae	Limonium bicolor	5	Lb1G05452, Lb3G16055, Lb3G19955, Lb7G33000, Lb7G33003
Poaceae	Echinochloa crus-galli	18	AH01.4451, AH03.151, AH04.1628, AH04.280, AH05.190, AH05.191 ... BH03.187, BH04.1650, BH04.268, BH05.218, BH05.220, CH01.5061, CH03.242, CH04.1870, CH04.287, CH05.275, CH05.276, Contig192.91
Poaceae	Eleusine coracana subsp. coracana	6	gene-QOZ80_3AG0239670, gene-QOZ80_3BG0288350 ... gene-QOZ80_5AG0381370, gene-QOZ80_5BG0428420, gene-QOZ80_9AG0674550, gene-QOZ80_9BG0698350
Poaceae	Hordeum vulgare	3	HORVU.MOREX.r3.2HG0154460.1, HORVU.MOREX.r3.4HG0394720.1 ... HORVU.MOREX.r3.5HG0459580.1
Poaceae	Lolium multiflorum	3	gene-QYE76_003024, gene-QYE76_003026, gene-QYE76_003158
Poaceae	Oryza coarctata	12	Oco05G007300, Oco05G020090, Oco06G007550, Oco06G020870 ... Oco13G000840, Oco14G000910, Oco20G000080, Oco21G001110, Oco22G001940, Oco22G008400, Oco23G001750, Oco24G001280
Poaceae	Oryza sativa	6	LOC_Os03g12990.1, LOC_Os03g47230.1, LOC_Os07g03200.1 ... LOC_Os11g05190.1, LOC_Os11g35310.1, LOC_Os12g05260.1
Poaceae	Paspalum vaginatum	5	gene-BS78_01G430600, gene-BS78_02G022200 ... gene-BS78_05G047600, gene-BS78_05G168100, gene-BS78_08G022900
Poaceae	Puccinellia tenuiflora	7	Pt_Chr0101837, Pt_Chr0101871, Pt_Chr0103118, Pt_Chr0303450 ... Pt_Chr0303469, Pt_Chr0703128, Pt_Chr0703178
Poaceae	Sporobolus alterniflorus	12	Chr01G028430, Chr07G021380, Chr0G005140, Chr12G011030 ... Chr16G009380, Chr17G008420, Chr19G012060, Chr19G018400, Chr24G002000, Chr27G003890, Chr31G000940, Chr31G006750
Poaceae	Thinopyrum elongatum	4	Tel2E01G471400, Tel4E01G204500, Tel4E01G408000 ... Tel5E01G235800
Poaceae	Triticum dicoccoides	8	gene_TRIDC2AG038200, gene_TRIDC2BG039990 ... gene_TRIDC4AG009190, gene_TRIDC4AG029860, gene_TRIDC4BG021300, gene_TRIDC4BG041650, gene_TRIDC5AG022970, gene_TRIDC5BG023090
Poaceae	Triticum aestivum	12	TraesCS2A02G267200.1, TraesCS2B02G275300.2 ... TraesCS2D02G256900.1, TraesCS4A02G060600.1, TraesCS4A02G186800.1.cds1, TraesCS4B02G131900.1, TraesCS4B02G236000.1, TraesCS4D02G126700.1, TraesCS4D02G237400.1, TraesCS5A02G130400.1, TraesCS5B02G130300.1, TraesCS5D02G137900.1
Poaceae	Zea mays	7	Zm00001eb114080_P001, Zm00001eb139570_P001 ... Zm00001eb196710_P001, Zm00001eb299250_P001, Zm00001eb399450_P001, Zm00001eb406460_P001, Zm00001eb406480_P002
Poaceae	Zoysia japonica	8	nbis-gene-2403, nbis-gene-25654, nbis-gene-27048 ... nbis-gene-35841, nbis-gene-4003, nbis-gene-44240, nbis-gene-45766, nbis-gene-46367
Poaceae	Zoysia macrostachya	9	Zma_g1728, Zma_g17562, Zma_g18070, Zma_g18411, Zma_g18965 ... Zma_g24731, Zma_g25494, Zma_g4107, Zma_g5915
Portulacaceae	Portulaca oleracea	5	evm.TU.LG05.63, evm.TU.LG08.1025, evm.TU.LG11.1173 ... evm.TU.LG22.758, evm.TU.LG25.1271
Posidoniaceae	Posidonia oceanica	3	gene.Posoc03g27770, gene.Posoc03g27780, gene.Posoc03g27800
Rhizophoraceae	Bruguiera sexangula	4	evm.TU.Scaffold_1_RagTag.1999, evm.TU.Scaffold_3_RagTag.1184 ... evm.TU.Scaffold_6_RagTag.1767, evm.TU.Scaffold_7_RagTag.837
Rhizophoraceae	Carallia pectinifolia	4	nbisL1-mrna-17391, nbisL1-mrna-19292, nbisL1-mrna-5809 ... nbisL1-mrna-6140
Rhizophoraceae	Ceriops tagal	3	nbisL1-mrna-3079, nbisL1-mrna-9420, nbisL1-mrna-9763
Rhizophoraceae	Ceriops zippeliana	4	nbisL1-mrna-11997, nbisL1-mrna-22087, nbisL1-mrna-3524 ... nbisL1-mrna-6670
Rhizophoraceae	Kandelia candel	5	evm.TU.utg000002l.647, evm.TU.utg000011l.1074 ... evm.TU.utg000015l.249, evm.TU.utg000016l.265, evm.TU.utg000016l.477
Rhizophoraceae	Kandelia obovata	4	Maker00010342, Maker00015258, Maker00016394, Maker00016862
Rhizophoraceae	Rhizophora apiculata	4	nbisL1-mrna-15431, nbisL1-mrna-4152, nbisL1-mrna-4154 ... nbisL1-mrna-7651
Rhizophoraceae	Rhizophora mangle	7	nbisL1-mrna-10089, nbisL1-mrna-13943, nbisL1-mrna-1879 ... nbisL1-mrna-22162, nbisL1-mrna-22165, nbisL1-mrna-3318, nbisL1-mrna-434
Salicaceae	Populus euphratica	6	populus_peu08563, populus_peu20929, populus_peu23755 ... populus_peu32081, populus_peu36190, populus_peu36772
Solanaceae	Lycium barbarum	10	gene-LOC132599475, gene-LOC132600211, gene-LOC132604365 ... gene-LOC132604417, gene-LOC132605422, gene-LOC132622813, gene-LOC132623183, gene-LOC132623245, gene-LOC132623608, gene-LOC132633650
Solanaceae	Solanum chilense	9	SOLCI001085000, SOLCI001085100, SOLCI001117400 ... SOLCI003780100, SOLCI004140600, SOLCI005923200, SOLCI005998300, SOLCI006144100, SOLCI007079400
Solanaceae	Solanum pennellii	7	gene-LOC107001773, gene-LOC107004279, gene-LOC107009364 ... gene-LOC107010667, gene-LOC107017382, gene-LOC107022546, gene-LOC107030554
Tamaricaceae	Reaumuria soongarica	3	gene_1787, gene_8379, gene_8607
Zosteraceae	Zostera marina	1	Zosma06g01810.v3.1