Basic Information
Locus ID:
Ag11G04292
Species & Taxonomic ID:
Apium graveolens & 4045
Genome Assembly:
GCA_009905375.1
Description:
Receptor-like serine threonine-protein kinase NCRK isoform X1
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr11 | 164021349 | 164025945 | - | Ag11G04292 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.23 | 42,306.16 Da | 54.93 | 89.58 | -0.02 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT2G28250.1 | Protein kinase superfamily protein. | 0 |
| RefSeq | XP_017237020.1 | PREDICTED: receptor-like serine/threonine-protein kinase NCRK isoform X1 [Daucus carota subsp. sativus] | 0 |
| Q8VYY5 | Receptor-like serine/threonine-protein kinase NCRK OS=Arabidopsis thaliana OX=3702 GN=NCRK PE=1 SV=1 | 0 | |
| TrEMBL | A0A166DGM0 | Protein kinase domain-containing protein OS=Daucus carota subsp. sativus OX=79200 GN=DCAR_006067 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| PRJNA723697 | SRX10692252 | 14.913425 | Shengqin NO.2 | seed | S1-1 | S1-1 | initial formation stage (S1) |
| PRJNA723697 | SRX10692254 | 24.684217 | Shengqin NO.2 | seed | S1-3 | S1-3 | initial formation stage (S1) |
| PRJNA723697 | SRX10692255 | 17.456022 | Shengqin NO.2 | seed | S3-1 | S3-1 | middle development stage (S3) |
| PRJNA723697 | SRX10692256 | 22.054289 | Shengqin NO.2 | seed | S3-2 | S3-2 | middle development stage (S3) |
| PRJNA723697 | SRX10692257 | 20.321089 | Shengqin NO.2 | seed | S3-3 | S3-3 | middle development stage (S3) |
| PRJNA723697 | SRX10692258 | 15.467276 | Shengqin NO.2 | seed | S5-1 | S5-1 | maturation stage (S5) |
| PRJNA723697 | SRX10692259 | 14.939939 | Shengqin NO.2 | seed | S5-2 | S5-2 | maturation stage (S5) |
| PRJNA723697 | SRX10692260 | 2.92246 | Shengqin NO.2 | seed | S5-3 | S5-3 | maturation stage (S5) |
| PRJNA884666 | SRX17729272 | 11.745047 | celery | anther | W99A-r1 | male sterile line | |
| PRJNA884666 | SRX17729273 | 9.737391 | celery | anther | W99A-r2 | male sterile line | |
| PRJNA884666 | SRX17729274 | 9.638779 | celery | anther | W99A-r3 | male sterile line | |
| PRJNA884666 | SRX17729275 | 7.779104 | celery | anther | W99B-r1 | maintainer line | |
| PRJNA884666 | SRX17729276 | 10.228508 | celery | anther | W99B-r2 | maintainer line | |
| PRJNA884666 | SRX17729277 | 8.414107 | celery | anther | W99B-r3 | maintainer line | |
| PRJNA884180 | SRX17743889 | 209.846939 | var. secalinum Yablochny | collenchyma | Col_S1_rep1-1 | ||
| PRJNA884180 | SRX17748056 | 131.132172 | var. secalinum Yablochny | collenchyma | Col_S1_rep3 | biological replicate 3 | |
| PRJNA884180 | SRX17748057 | 130.849075 | var. secalinum Yablochny | collenchyma | Col_S1_rep4 | biological replicate 4 | |
| PRJNA884180 | SRX17748678 | 25.368595 | var. secalinum Yablochny | parenchyma | Par_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17748679 | 33.981594 | var. secalinum Yablochny | parenchyma | Par_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17748680 | 29.579306 | var. secalinum Yablochny | parenchyma | Par_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17748681 | 50.517475 | var. secalinum Yablochny | parenchyma | Par_S1_rep4 | Biological replicate 4 | |
| PRJNA884180 | SRX17748898 | 63.513596 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17748899 | 48.470085 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17748900 | 39.60474 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17748901 | 57.500996 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep4 | Biological replicate 4 | |
| PRJNA884180 | SRX17749129 | 31.032133 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17749130 | 19.783957 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17749131 | 43.359959 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17749132 | 37.112782 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep4 | Biological replicate 4 | |
| PRJNA1124269 | SRX24936411 | 0.337974 | leaf | CK1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936412 | 0.546583 | leaf | CK2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936413 | 0.623289 | leaf | CK3 | replicate=biological replicate3 | ||
| PRJNA1124269 | SRX24936414 | 4.097473 | leaf | D1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936415 | 7.29221 | leaf | D2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936416 | 2.493684 | leaf | D3 | replicate=biological replicate3 | ||
| PRJNA1124269 | SRX24936417 | 3.755221 | leaf | MD1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936418 | 1.744768 | leaf | MD2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936419 | 2.083385 | leaf | MD3 | replicate=biological replicate3 | ||
| PRJNA387092 | SRX2833309 | 3.685695 | shanghaihuangxin | leaf | leaves between 0.5 and 1 cm in breadth, folded; | stage 2 | |
| PRJNA387092 | SRX2833321 | 1.484856 | shanghaihuangxin | leaf | leaves between 2and 2.5 cm in breadth, nearly unfolded, with clear stem exten-sion | stage 5 | |
| PRJNA387092 | SRX2833323 | 1.01771 | shanghaihuangxin | leaf | leaves >3 cm, unfolded, with clearstem extension | stage 7 | |
| PRJNA543957 | SRX5879598 | 7.430551 | Zhangzhou lvqing | stem | Se3 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879599 | 6.258344 | Zhangzhou lvqing | stem | Se2 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879600 | 3.925437 | Zhangzhou lvqing | stem | Mock2 | mock | |
| PRJNA543957 | SRX5879601 | 16.590786 | Zhangzhou lvqing | stem | Mock1 | mock | |
| PRJNA543957 | SRX5879602 | 2.449176 | Zhangzhou lvqing | stem | Se1 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879603 | 58.418026 | Zhangzhou lvqing | stem | Mock3 | mock | |
| PRJNA609149 | SRX7815917 | 6.422816 | Jinnan Shiqin | flower bud | early flower bud | early flower bud | |
| PRJNA609149 | SRX7815918 | 6.209604 | Jinnan Shiqin | flower bud | middle flower bud | middle flower bud | |
| PRJNA609149 | SRX7815919 | 5.028143 | Jinnan Shiqin | flower bud | early flowering period | early flowering period |
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Acanthaceae | Avicennia marina | 2 | jg35900, jg8246 |
| Aizoaceae | Mesembryanthemum crystallinum | 1 | gene_20820 |
| Amaranthaceae | Beta vulgaris | 1 | BVRB_9g205270 |
| Amaranthaceae | Salicornia bigelovii | 2 | Sbi_jg2615, Sbi_jg60085 |
| Amaranthaceae | Salicornia europaea | 1 | Seu_jg24269 |
| Amaranthaceae | Suaeda aralocaspica | 1 | GOSA_00015880 |
| Amaranthaceae | Suaeda glauca | 4 | Sgl78486, Sgl78511, Sgl80982, Sgl80983 |
| Amaranthaceae | Chenopodium album | 3 | gene:ENSEOMG00000019740, gene:ENSEOMG00000039394 ... |
| Amaranthaceae | Chenopodium quinoa | 1 | CQ.Regalona.r1.9AG0004450 |
| Anacardiaceae | Pistacia vera | 1 | pistato.v30058420 |
| Apiaceae | Apium graveolens | 1 | Ag11G04292 |
| Arecaceae | Phoenix dactylifera | 1 | gene-LOC103718262 |
| Asparagaceae | Asparagus officinalis | 1 | AsparagusV1_07.2034.V1.1 |
| Asteraceae | Flaveria trinervia | 1 | Ftri17G30873 |
| Brassicaceae | Arabidopsis thaliana | 1 | AT2G28250.1 |
| Brassicaceae | Eutrema salsugineum | 1 | Thhalv10016449m.g.v1.0 |
| Brassicaceae | Schrenkiella parvula | 1 | Sp4g11060.v2.2 |
| Brassicaceae | Brassica nigra | 1 | BniB06g017080.2N |
| Casuarinaceae | Casuarina equisetifolia | 1 | Ceq08G1685 |
| Casuarinaceae | Casuarina glauca | 1 | Cgl08G1727 |
| Cymodoceaceae | Cymodocea nodosa | 1 | gene.Cymno10g00150 |
| Hydrocharitaceae | Thalassia testudinum | 1 | gene.Thate08g24780 |
| Malvaceae | Hibiscus hamabo Siebold & Zucc. | 1 | nbisL1-mrna-546 |
| Nitrariaceae | Nitraria sibirica | 1 | evm.TU.LG09.890 |
| Plantaginaceae | Plantago ovata | 1 | Pov_00014590 |
| Poaceae | Echinochloa crus-galli | 3 | AH07.138, BH07.67, CH03.4761 |
| Poaceae | Eleusine coracana subsp. coracana | 2 | gene-QOZ80_2AG0098970, gene-QOZ80_2BG0152420 |
| Poaceae | Hordeum vulgare | 1 | HORVU.MOREX.r3.6HG0542970.1 |
| Poaceae | Lolium multiflorum | 1 | gene-QYE76_019457 |
| Poaceae | Oryza coarctata | 2 | Oco03G000520, Oco04G000520 |
| Poaceae | Oryza sativa | 1 | LOC_Os02g02040.1 |
| Poaceae | Paspalum vaginatum | 1 | gene-BS78_04G007900 |
| Poaceae | Puccinellia tenuiflora | 2 | Pt_Chr0200904, Pt_Chr0200905 |
| Poaceae | Sporobolus alterniflorus | 1 | Chr0G010340 |
| Poaceae | Thinopyrum elongatum | 1 | Tel6E01G080100 |
| Poaceae | Triticum dicoccoides | 3 | gene_TRIDC6AG003370, gene_TRIDC6AG003380 ... |
| Poaceae | Triticum aestivum | 3 | TraesCS6B02G039900.1, TraesCS6D02G031600.1 ... |
| Poaceae | Zea mays | 1 | Zm00001eb229650_P002 |
| Poaceae | Zoysia japonica | 1 | nbis-gene-52324 |
| Poaceae | Zoysia macrostachya | 1 | Zma_g14821 |
| Portulacaceae | Portulaca oleracea | 2 | evm.TU.LG13.1205, evm.TU.LG21.837 |
| Posidoniaceae | Posidonia oceanica | 1 | gene.Posoc06g00380 |
| Rhizophoraceae | Bruguiera sexangula | 2 | evm.TU.Scaffold_12_RagTag.387, evm.TU.Scaffold_13_RagTag.691 |
| Rhizophoraceae | Carallia pectinifolia | 3 | nbisL1-mrna-24357, nbisL1-mrna-24445, nbisL1-mrna-30362 |
| Rhizophoraceae | Ceriops tagal | 2 | nbisL1-mrna-2375, nbisL1-mrna-791 |
| Rhizophoraceae | Ceriops zippeliana | 2 | nbisL1-mrna-16076, nbisL1-mrna-19653 |
| Rhizophoraceae | Kandelia candel | 2 | evm.TU.utg000015l.396, evm.TU.utg000027l.338 |
| Rhizophoraceae | Kandelia obovata | 2 | Maker00015702, Maker00018098 |
| Rhizophoraceae | Rhizophora apiculata | 2 | nbisL1-mrna-4316, nbisL1-mrna-5648 |
| Rhizophoraceae | Rhizophora mangle | 2 | nbisL1-mrna-11872, nbisL1-mrna-15101 |
| Salicaceae | Populus euphratica | 3 | populus_peu08357, populus_peu35469, populus_peu35470 |
| Solanaceae | Lycium barbarum | 1 | gene-LOC132600397 |
| Solanaceae | Solanum chilense | 1 | SOLCI005954600 |
| Solanaceae | Solanum pennellii | 1 | gene-LOC107005050 |
| Tamaricaceae | Tamarix chinensis | 1 | TC03G1437 |
| Zosteraceae | Zostera marina | 1 | Zosma03g22310.v3.1 |