Basic Information
Locus ID:
Ag11G04273
Species & Taxonomic ID:
Apium graveolens & 4045
Genome Assembly:
GCA_009905375.1
Description:
Reverse transcriptase-like
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr11 | 162656422 | 162660084 | + | Ag11G04273 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.22 | 60,054.97 Da | 57.62 | 74.82 | -0.33 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF01485 | IBR domain, a half RING-finger domain | 435 | 488 | 1.6E-7 | IPR002867 |
| Pfam | PF01485 | IBR domain, a half RING-finger domain | 351 | 420 | 3.0E-12 | IPR002867 |
| Pfam | PF13456 | Reverse transcriptase-like | 141 | 261 | 1.2E-20 | IPR002156 |
| SUPERFAMILY | SSF57850 | RING/U-box | 433 | 498 | 6.1E-16 | - |
| SUPERFAMILY | SSF57850 | RING/U-box | 276 | 359 | 1.61E-13 | - |
| Gene3D | G3DSA:1.20.120.1750 | - | 418 | 526 | 8.3E-17 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 275 | 358 | 9.9E-13 | IPR013083 |
| Gene3D | G3DSA:3.30.420.10 | - | 132 | 269 | 1.7E-11 | IPR036397 |
| SMART | SM00647 | ibrneu5 | 429 | 490 | 0.075 | IPR002867 |
| SMART | SM00647 | ibrneu5 | 347 | 420 | 2.2E-14 | IPR002867 |
| ProSiteProfiles | PS51873 | TRIAD supradomain profile. | 276 | 496 | 24.265991 | IPR044066 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 280 | 326 | 9.538678 | IPR001841 |
| ProSitePatterns | PS00518 | Zinc finger RING-type signature. | 298 | 307 | - | IPR017907 |
Gene Ontology
Molecular Function:
KEGG Pathway
KO Term:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G60250.1 | zinc finger (C3HC4-type RING finger) family protein. | 0 |
| RefSeq | XP_017232656.1 | PREDICTED: uncharacterized protein LOC108206766 [Daucus carota subsp. sativus] | 0 |
| F4ITM1 | E3 ubiquitin-protein ligase RSL1 OS=Arabidopsis thaliana OX=3702 GN=RSL1 PE=1 SV=1 | 0 | |
| TrEMBL | A0A166DFR6 | RING-type domain-containing protein OS=Daucus carota subsp. sativus OX=79200 GN=DCAR_006039 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| PRJNA723697 | SRX10692252 | 11.88958 | Shengqin NO.2 | seed | S1-1 | S1-1 | initial formation stage (S1) |
| PRJNA723697 | SRX10692254 | 10.971959 | Shengqin NO.2 | seed | S1-3 | S1-3 | initial formation stage (S1) |
| PRJNA723697 | SRX10692255 | 9.42697 | Shengqin NO.2 | seed | S3-1 | S3-1 | middle development stage (S3) |
| PRJNA723697 | SRX10692256 | 10.818202 | Shengqin NO.2 | seed | S3-2 | S3-2 | middle development stage (S3) |
| PRJNA723697 | SRX10692257 | 11.581882 | Shengqin NO.2 | seed | S3-3 | S3-3 | middle development stage (S3) |
| PRJNA723697 | SRX10692258 | 13.583917 | Shengqin NO.2 | seed | S5-1 | S5-1 | maturation stage (S5) |
| PRJNA723697 | SRX10692259 | 11.437542 | Shengqin NO.2 | seed | S5-2 | S5-2 | maturation stage (S5) |
| PRJNA723697 | SRX10692260 | 12.651971 | Shengqin NO.2 | seed | S5-3 | S5-3 | maturation stage (S5) |
| PRJNA884666 | SRX17729272 | 22.752262 | celery | anther | W99A-r1 | male sterile line | |
| PRJNA884666 | SRX17729273 | 23.03672 | celery | anther | W99A-r2 | male sterile line | |
| PRJNA884666 | SRX17729274 | 22.728685 | celery | anther | W99A-r3 | male sterile line | |
| PRJNA884666 | SRX17729275 | 21.241999 | celery | anther | W99B-r1 | maintainer line | |
| PRJNA884666 | SRX17729276 | 17.137268 | celery | anther | W99B-r2 | maintainer line | |
| PRJNA884666 | SRX17729277 | 18.966179 | celery | anther | W99B-r3 | maintainer line | |
| PRJNA884180 | SRX17743889 | 13.168097 | var. secalinum Yablochny | collenchyma | Col_S1_rep1-1 | ||
| PRJNA884180 | SRX17748056 | 14.218686 | var. secalinum Yablochny | collenchyma | Col_S1_rep3 | biological replicate 3 | |
| PRJNA884180 | SRX17748057 | 9.382237 | var. secalinum Yablochny | collenchyma | Col_S1_rep4 | biological replicate 4 | |
| PRJNA884180 | SRX17748678 | 12.142853 | var. secalinum Yablochny | parenchyma | Par_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17748679 | 12.411418 | var. secalinum Yablochny | parenchyma | Par_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17748680 | 19.815817 | var. secalinum Yablochny | parenchyma | Par_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17748681 | 15.597786 | var. secalinum Yablochny | parenchyma | Par_S1_rep4 | Biological replicate 4 | |
| PRJNA884180 | SRX17748898 | 14.033849 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17748899 | 14.488735 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17748900 | 14.822629 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17748901 | 14.392747 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep4 | Biological replicate 4 | |
| PRJNA884180 | SRX17749129 | 10.595395 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17749130 | 10.279899 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17749131 | 11.995596 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17749132 | 12.661308 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep4 | Biological replicate 4 | |
| PRJNA1124269 | SRX24936411 | 5.00232 | leaf | CK1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936412 | 5.804214 | leaf | CK2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936413 | 6.034454 | leaf | CK3 | replicate=biological replicate3 | ||
| PRJNA1124269 | SRX24936414 | 17.618786 | leaf | D1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936415 | 14.127535 | leaf | D2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936416 | 19.092646 | leaf | D3 | replicate=biological replicate3 | ||
| PRJNA1124269 | SRX24936417 | 15.734382 | leaf | MD1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936418 | 14.043904 | leaf | MD2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936419 | 13.635506 | leaf | MD3 | replicate=biological replicate3 | ||
| PRJNA387092 | SRX2833309 | 11.244352 | shanghaihuangxin | leaf | leaves between 0.5 and 1 cm in breadth, folded; | stage 2 | |
| PRJNA387092 | SRX2833321 | 7.912208 | shanghaihuangxin | leaf | leaves between 2and 2.5 cm in breadth, nearly unfolded, with clear stem exten-sion | stage 5 | |
| PRJNA387092 | SRX2833323 | 5.140419 | shanghaihuangxin | leaf | leaves >3 cm, unfolded, with clearstem extension | stage 7 | |
| PRJNA543957 | SRX5879598 | 28.886724 | Zhangzhou lvqing | stem | Se3 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879599 | 32.107433 | Zhangzhou lvqing | stem | Se2 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879600 | 29.554976 | Zhangzhou lvqing | stem | Mock2 | mock | |
| PRJNA543957 | SRX5879601 | 26.213125 | Zhangzhou lvqing | stem | Mock1 | mock | |
| PRJNA543957 | SRX5879602 | 19.610365 | Zhangzhou lvqing | stem | Se1 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879603 | 21.891342 | Zhangzhou lvqing | stem | Mock3 | mock | |
| PRJNA609149 | SRX7815917 | 14.128908 | Jinnan Shiqin | flower bud | early flower bud | early flower bud | |
| PRJNA609149 | SRX7815918 | 14.850935 | Jinnan Shiqin | flower bud | middle flower bud | middle flower bud | |
| PRJNA609149 | SRX7815919 | 12.293283 | Jinnan Shiqin | flower bud | early flowering period | early flowering period |
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Acanthaceae | Avicennia marina | 2 | jg16644, jg16645 |
| Aizoaceae | Mesembryanthemum crystallinum | 2 | gene_20887, gene_20888 |
| Amaranthaceae | Suaeda glauca | 4 | Sgl78662, Sgl78677, Sgl81141, Sgl81153 |
| Amaranthaceae | Chenopodium album | 3 | gene:ENSEOMG00000015962, gene:ENSEOMG00000039759 ... |
| Amaranthaceae | Chenopodium quinoa | 2 | CQ.Regalona.r1.9AG0005260, CQ.Regalona.r1.9BG0017040 |
| Anacardiaceae | Pistacia vera | 1 | pistato.v30059140 |
| Apiaceae | Apium graveolens | 3 | Ag11G04273, Ag11G04274, Ag11G04275 |
| Arecaceae | Cocos nucifera | 1 | COCNU_04G002940 |
| Arecaceae | Phoenix dactylifera | 1 | gene-LOC103702868 |
| Asparagaceae | Asparagus officinalis | 1 | AsparagusV1_07.383.V1.1 |
| Asteraceae | Flaveria trinervia | 4 | Ftri16G11156, Ftri16G28335, Ftri16G33256, Ftri2G26274 |
| Brassicaceae | Arabidopsis thaliana | 21 | AT2G19610.2, AT2G21420.1, AT2G22940.1, AT2G25360.1 ... |
| Brassicaceae | Eutrema salsugineum | 7 | Thhalv10000449m.g.v1.0, Thhalv10002469m.g.v1.0 ... |
| Brassicaceae | Schrenkiella parvula | 6 | Sp4g04530.v2.2, Sp4g04580.v2.2, Sp4g06090.v2.2 ... |
| Brassicaceae | Brassica nigra | 16 | BniB01g017220.2N, BniB01g017230.2N, BniB01g040740.2N ... |
| Casuarinaceae | Casuarina equisetifolia | 4 | Ceq08G2422, Ceq08G2423, Ceq08G2424, Ceq08G2425 |
| Casuarinaceae | Casuarina glauca | 4 | Cgl04G2503, Cgl08G2641, Cgl08G2642, Cgl08G2661 |
| Hydrocharitaceae | Thalassia testudinum | 2 | gene.Thate01g01670, gene.Thate01g01690 |
| Nitrariaceae | Nitraria sibirica | 2 | evm.TU.LG09.961, evm.TU.LG09.962 |
| Plantaginaceae | Plantago ovata | 4 | Pov_00006793, Pov_00014691, Pov_00033936, Pov_00033939 |
| Plumbaginaceae | Limonium bicolor | 2 | Lb6G31815, Lb6G31819 |
| Poaceae | Echinochloa crus-galli | 5 | AH02.994, AH06.339, BH02.1133, BH06.445, CH02.1168 |
| Poaceae | Eleusine coracana subsp. coracana | 5 | gene-QOZ80_5AG0378410, gene-QOZ80_5AG0378420 ... |
| Poaceae | Hordeum vulgare | 3 | HORVU.MOREX.r3.5HG0466340.1, HORVU.MOREX.r3.5HG0466420.1 ... |
| Poaceae | Lolium multiflorum | 4 | gene-QYE76_003804, gene-QYE76_003806, gene-QYE76_003807 ... |
| Poaceae | Oryza coarctata | 4 | Ocoptg000043lG000030, Ocoptg000074lG000040 ... |
| Poaceae | Oryza sativa | 3 | LOC_Os03g44720.1, LOC_Os11g01240.1, LOC_Os12g01230.1 |
| Poaceae | Paspalum vaginatum | 2 | gene-BS78_08G000300, gene-BS78_10G051600 |
| Poaceae | Puccinellia tenuiflora | 2 | Pt_Chr0705190, Pt_Chr0705191 |
| Poaceae | Sporobolus alterniflorus | 8 | Chr04G023150, Chr04G023160, Chr06G024900, Chr06G024920 ... |
| Poaceae | Thinopyrum elongatum | 3 | Tel5E01G268400, Tel5E01G268500, Tel7E01G317000 |
| Poaceae | Triticum dicoccoides | 2 | gene_TRIDC5AG025830, gene_TRIDC5BG026960 |
| Poaceae | Triticum aestivum | 7 | TraesCS5A02G155400.1, TraesCS5A02G155500.1 ... |
| Poaceae | Zea mays | 1 | Zm00001eb194870_P002 |
| Poaceae | Zoysia japonica | 2 | nbis-gene-25859, nbis-gene-46275 |
| Poaceae | Zoysia macrostachya | 2 | Zma_g24580, Zma_g25551 |
| Portulacaceae | Portulaca oleracea | 7 | evm.TU.LG02.2352, evm.TU.LG02.2353, evm.TU.LG03.2251 ... |
| Posidoniaceae | Posidonia oceanica | 1 | gene.Posoc02g02890 |
| Rhizophoraceae | Bruguiera sexangula | 3 | evm.TU.Scaffold_12_RagTag.331, evm.TU.Scaffold_12_RagTag.332 ... |
| Rhizophoraceae | Carallia pectinifolia | 2 | nbisL1-mrna-24464, nbisL1-mrna-30305 |
| Rhizophoraceae | Ceriops tagal | 2 | nbisL1-mrna-19735, nbisL1-mrna-9410 |
| Rhizophoraceae | Ceriops zippeliana | 2 | nbisL1-mrna-16120, nbisL1-mrna-19607 |
| Rhizophoraceae | Kandelia candel | 2 | evm.TU.utg000015l.432, evm.TU.utg000027l.371 |
| Rhizophoraceae | Kandelia obovata | 2 | Maker00015287, Maker00017822 |
| Rhizophoraceae | Rhizophora apiculata | 2 | nbisL1-mrna-4352, nbisL1-mrna-5613 |
| Rhizophoraceae | Rhizophora mangle | 2 | nbisL1-mrna-11829, nbisL1-mrna-15059 |
| Salicaceae | Populus euphratica | 2 | populus_peu11475, populus_peu36784 |
| Solanaceae | Lycium barbarum | 4 | gene-LOC132600799, gene-LOC132605940, gene-LOC132605944 ... |
| Solanaceae | Solanum chilense | 1 | SOLCI001155000 |
| Solanaceae | Solanum pennellii | 1 | gene-LOC107021552 |
| Tamaricaceae | Reaumuria soongarica | 2 | STRG.4780_chr04_-, gene_101 |
| Tamaricaceae | Tamarix chinensis | 1 | TC03G0004 |
| Zosteraceae | Zostera marina | 1 | Zosma06g21390.v3.1 |