Basic Information
Locus ID:
Ag11G04260
Species & Taxonomic ID:
Apium graveolens & 4045
Genome Assembly:
GCA_009905375.1
Description:
phototropin
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr11 | 161466401 | 161474764 | - | Ag11G04260 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 7.57 | 109,251.37 Da | 42.24 | 76.42 | -0.60 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd00130 | PAS | 196 | 289 | 5.49616E-9 | IPR000014 |
| CDD | cd05574 | STKc_phototropin_like | 653 | 958 | 0.0 | - |
| CDD | cd00130 | PAS | 469 | 569 | 5.80936E-12 | IPR000014 |
| Pfam | PF00069 | Protein kinase domain | 657 | 939 | 3.9E-64 | IPR000719 |
| Pfam | PF13426 | PAS domain | 194 | 290 | 3.3E-21 | IPR000014 |
| Pfam | PF13426 | PAS domain | 477 | 569 | 3.3E-20 | IPR000014 |
| SUPERFAMILY | SSF55785 | PYP-like sensor domain (PAS domain) | 470 | 569 | 9.77E-25 | IPR035965 |
| SUPERFAMILY | SSF56112 | Protein kinase-like (PK-like) | 631 | 962 | 9.31E-82 | IPR011009 |
| SUPERFAMILY | SSF55785 | PYP-like sensor domain (PAS domain) | 194 | 286 | 3.29E-24 | IPR035965 |
| Gene3D | G3DSA:1.10.510.10 | Transferase(Phosphotransferase) domain 1 | 739 | 954 | 5.7E-96 | - |
| Gene3D | G3DSA:3.30.450.20 | PAS domain | 443 | 607 | 3.8E-55 | - |
| Gene3D | G3DSA:3.30.200.20 | Phosphorylase Kinase; domain 1 | 654 | 738 | 5.7E-96 | - |
| Gene3D | G3DSA:3.30.450.20 | PAS domain | 187 | 344 | 3.0E-46 | - |
| SMART | SM00091 | pas_2 | 456 | 525 | 0.34 | IPR000014 |
| SMART | SM00086 | pac_2 | 250 | 292 | 4.0E-5 | IPR001610 |
| SMART | SM00091 | pas_2 | 175 | 244 | 0.015 | IPR000014 |
| SMART | SM00220 | serkin_6 | 655 | 939 | 2.4E-96 | IPR000719 |
| SMART | SM00086 | pac_2 | 531 | 573 | 7.6E-8 | IPR001610 |
| TIGRFAM | TIGR00229 | sensory_box: PAS domain S-box protein | 479 | 569 | 9.0E-10 | IPR000014 |
| TIGRFAM | TIGR00229 | sensory_box: PAS domain S-box protein | 197 | 294 | 2.0E-12 | IPR000014 |
| ProSiteProfiles | PS50112 | PAS repeat profile. | 458 | 527 | 11.069136 | IPR000014 |
| ProSiteProfiles | PS50011 | Protein kinase domain profile. | 655 | 939 | 46.265541 | IPR000719 |
| ProSiteProfiles | PS50113 | PAC domain profile. | 247 | 301 | 12.15552 | IPR000700 |
| ProSiteProfiles | PS50112 | PAS repeat profile. | 173 | 246 | 11.036944 | IPR000014 |
| ProSiteProfiles | PS50113 | PAC domain profile. | 528 | 582 | 11.783417 | IPR000700 |
| ProSitePatterns | PS00108 | Serine/Threonine protein kinases active-site signature. | 776 | 788 | - | IPR008271 |
| ProSitePatterns | PS00107 | Protein kinases ATP-binding region signature. | 661 | 684 | - | IPR017441 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 961 | 983 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 69 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 374 | 391 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 365 | 446 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 138 | 159 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 10 | 35 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 117 | 166 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 36 | 58 | - | - |
Gene Ontology
Biological Process:
Molecular Function:
KEGG Pathway
KO Term:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G45780.1 | phototropin 1. Blue-light photoreceptor. Contains a light activated serine-threonine kinase domain and LOV1 and LOV2 repeats. Mutants are defective in blue-light response. Mediates blue light-induced growth enhancements. PHOT1 and PHOT2 mediate blue light-dependent activation of the plasma membrane H+-ATPase in guard cell protoplasts. PHOT1 undergoes blue-light-dependent autophosphorylation. At least eight phosphorylation sites have been identified in PHOT1. Phosphorylation of serine851 in the activation loop of PHOT1 appears to be required for stomatal opening, chloroplast accumulation, leaf flattening, and phototropism, and phosphorylation of serine849 may also contribute to the regulation of these responses. Phosphorylation-dependent binding of 14-3-3 proteins to the Hinge1 region of PHOT1 appears to require serine350 and serine376. | 0 |
| RefSeq | XP_017234932.1 | PREDICTED: phototropin-1-like [Daucus carota subsp. sativus] | 0 |
| O48963 | Phototropin-1 OS=Arabidopsis thaliana OX=3702 GN=PHOT1 PE=1 SV=1 | 0 | |
| TrEMBL | A0A161X2F2 | LOV domain-containing protein OS=Daucus carota subsp. sativus OX=79200 GN=DCAR_006022 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| PRJNA723697 | SRX10692252 | 7.462403 | Shengqin NO.2 | seed | S1-1 | S1-1 | initial formation stage (S1) |
| PRJNA723697 | SRX10692254 | 5.100137 | Shengqin NO.2 | seed | S1-3 | S1-3 | initial formation stage (S1) |
| PRJNA723697 | SRX10692255 | 5.468902 | Shengqin NO.2 | seed | S3-1 | S3-1 | middle development stage (S3) |
| PRJNA723697 | SRX10692256 | 4.411756 | Shengqin NO.2 | seed | S3-2 | S3-2 | middle development stage (S3) |
| PRJNA723697 | SRX10692257 | 4.558831 | Shengqin NO.2 | seed | S3-3 | S3-3 | middle development stage (S3) |
| PRJNA723697 | SRX10692258 | 3.938801 | Shengqin NO.2 | seed | S5-1 | S5-1 | maturation stage (S5) |
| PRJNA723697 | SRX10692259 | 3.306581 | Shengqin NO.2 | seed | S5-2 | S5-2 | maturation stage (S5) |
| PRJNA723697 | SRX10692260 | 1.679386 | Shengqin NO.2 | seed | S5-3 | S5-3 | maturation stage (S5) |
| PRJNA884666 | SRX17729272 | 81.278389 | celery | anther | W99A-r1 | male sterile line | |
| PRJNA884666 | SRX17729273 | 68.667183 | celery | anther | W99A-r2 | male sterile line | |
| PRJNA884666 | SRX17729274 | 80.163246 | celery | anther | W99A-r3 | male sterile line | |
| PRJNA884666 | SRX17729275 | 72.570137 | celery | anther | W99B-r1 | maintainer line | |
| PRJNA884666 | SRX17729276 | 66.169861 | celery | anther | W99B-r2 | maintainer line | |
| PRJNA884666 | SRX17729277 | 61.651569 | celery | anther | W99B-r3 | maintainer line | |
| PRJNA884180 | SRX17743889 | 20.716103 | var. secalinum Yablochny | collenchyma | Col_S1_rep1-1 | ||
| PRJNA884180 | SRX17748056 | 37.738533 | var. secalinum Yablochny | collenchyma | Col_S1_rep3 | biological replicate 3 | |
| PRJNA884180 | SRX17748057 | 53.725609 | var. secalinum Yablochny | collenchyma | Col_S1_rep4 | biological replicate 4 | |
| PRJNA884180 | SRX17748678 | 149.940338 | var. secalinum Yablochny | parenchyma | Par_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17748679 | 154.538193 | var. secalinum Yablochny | parenchyma | Par_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17748680 | 65.907768 | var. secalinum Yablochny | parenchyma | Par_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17748681 | 89.474808 | var. secalinum Yablochny | parenchyma | Par_S1_rep4 | Biological replicate 4 | |
| PRJNA884180 | SRX17748898 | 44.833664 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17748899 | 43.490768 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17748900 | 51.735291 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17748901 | 71.395439 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep4 | Biological replicate 4 | |
| PRJNA884180 | SRX17749129 | 141.658264 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17749130 | 159.161423 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17749131 | 141.988831 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17749132 | 151.335129 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep4 | Biological replicate 4 | |
| PRJNA1124269 | SRX24936411 | 42.257286 | leaf | CK1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936412 | 51.92329 | leaf | CK2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936413 | 54.518089 | leaf | CK3 | replicate=biological replicate3 | ||
| PRJNA1124269 | SRX24936414 | 3.76611 | leaf | D1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936415 | 5.413802 | leaf | D2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936416 | 3.738983 | leaf | D3 | replicate=biological replicate3 | ||
| PRJNA1124269 | SRX24936417 | 6.318052 | leaf | MD1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936418 | 10.185523 | leaf | MD2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936419 | 7.281668 | leaf | MD3 | replicate=biological replicate3 | ||
| PRJNA387092 | SRX2833309 | 34.658909 | shanghaihuangxin | leaf | leaves between 0.5 and 1 cm in breadth, folded; | stage 2 | |
| PRJNA387092 | SRX2833321 | 48.466125 | shanghaihuangxin | leaf | leaves between 2and 2.5 cm in breadth, nearly unfolded, with clear stem exten-sion | stage 5 | |
| PRJNA387092 | SRX2833323 | 44.481556 | shanghaihuangxin | leaf | leaves >3 cm, unfolded, with clearstem extension | stage 7 | |
| PRJNA543957 | SRX5879598 | 1.092531 | Zhangzhou lvqing | stem | Se3 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879599 | 36.881374 | Zhangzhou lvqing | stem | Se2 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879600 | 207.752365 | Zhangzhou lvqing | stem | Mock2 | mock | |
| PRJNA543957 | SRX5879601 | 119.395584 | Zhangzhou lvqing | stem | Mock1 | mock | |
| PRJNA543957 | SRX5879602 | 1.356452 | Zhangzhou lvqing | stem | Se1 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879603 | 119.432083 | Zhangzhou lvqing | stem | Mock3 | mock | |
| PRJNA609149 | SRX7815917 | 27.100004 | Jinnan Shiqin | flower bud | early flower bud | early flower bud | |
| PRJNA609149 | SRX7815918 | 15.114205 | Jinnan Shiqin | flower bud | middle flower bud | middle flower bud | |
| PRJNA609149 | SRX7815919 | 17.489195 | Jinnan Shiqin | flower bud | early flowering period | early flowering period |
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Acanthaceae | Avicennia marina | 2 | jg26617, jg37943 |
| Aizoaceae | Mesembryanthemum crystallinum | 2 | gene_26579, gene_5952 |
| Amaranthaceae | Atriplex hortensis | 2 | Ah009900, Ah028129 |
| Amaranthaceae | Beta vulgaris | 2 | BVRB_7g174900, BVRB_9g216030 |
| Amaranthaceae | Salicornia bigelovii | 4 | Sbi_jg11175, Sbi_jg1878, Sbi_jg34642, Sbi_jg46151 |
| Amaranthaceae | Salicornia europaea | 2 | Seu_jg20490, Seu_jg2880 |
| Amaranthaceae | Suaeda aralocaspica | 2 | GOSA_00003095, GOSA_00005464 |
| Amaranthaceae | Suaeda glauca | 4 | Sgl55721, Sgl60935, Sgl73166, Sgl76710 |
| Amaranthaceae | Chenopodium album | 6 | gene:ENSEOMG00000005298, gene:ENSEOMG00000012984 ... |
| Amaranthaceae | Chenopodium quinoa | 4 | CQ.Regalona.r1.7AG0001910, CQ.Regalona.r1.7BG0004840 ... |
| Anacardiaceae | Pistacia vera | 2 | pistato.v30059470, pistato.v30107130 |
| Apiaceae | Apium graveolens | 4 | Ag10G00514, Ag11G04260, Ag1G00172, Ag5G00026 |
| Arecaceae | Cocos nucifera | 1 | COCNU_11G001240 |
| Arecaceae | Phoenix dactylifera | 3 | gene-LOC103702839, gene-LOC103711883, gene-LOC120104603 |
| Asparagaceae | Asparagus officinalis | 2 | AsparagusV1_05.1579.V1.1, AsparagusV1_08.3443.V1.1 |
| Asteraceae | Flaveria trinervia | 3 | Ftri11G34116, Ftri12G17732, Ftri18G22640 |
| Brassicaceae | Arabidopsis thaliana | 2 | AT3G45780.1, AT5G58140.2 |
| Brassicaceae | Eutrema salsugineum | 2 | Thhalv10002386m.g.v1.0, Thhalv10012609m.g.v1.0 |
| Brassicaceae | Schrenkiella parvula | 3 | Sp5g15740.v2.2, Sp6g19820.v2.2, SpUn0096_0010.v2.2 |
| Brassicaceae | Brassica nigra | 3 | BniB02g037570.2N, BniB06g024850.2N, BniB08g013390.2N |
| Casuarinaceae | Casuarina equisetifolia | 2 | Ceq08G2377, Ceq09G0011 |
| Casuarinaceae | Casuarina glauca | 2 | Cgl08G2568, Cgl09G0012 |
| Cymodoceaceae | Cymodocea nodosa | 3 | gene.Cymno02g05450, gene.Cymno05g16010, gene.Cymno06g08120 |
| Dunaliellaceae | Dunaliella salina | 1 | Dusal.0229s00007.v1.0 |
| Hydrocharitaceae | Thalassia testudinum | 2 | gene.Thate01g33280, gene.Thate07g07900 |
| Malvaceae | Hibiscus hamabo Siebold & Zucc. | 2 | nbisL1-mrna-11050, nbisL1-mrna-585 |
| Nitrariaceae | Nitraria sibirica | 2 | evm.TU.LG08.475, evm.TU.LG09.993 |
| Plantaginaceae | Plantago ovata | 2 | Pov_00025324, Pov_00037016 |
| Plumbaginaceae | Limonium bicolor | 4 | Lb1G00638, Lb3G18144, Lb3G19266, Lb4G21672 |
| Poaceae | Echinochloa crus-galli | 6 | AH05.89, AH09.474, BH04.19, BH09.519, CH04.17, CH09.569 |
| Poaceae | Eleusine coracana subsp. coracana | 4 | gene-QOZ80_4AG0323350, gene-QOZ80_4BG0352460 ... |
| Poaceae | Hordeum vulgare | 2 | HORVU.MOREX.r3.2HG0159250.1, HORVU.MOREX.r3.5HG0467030.1 |
| Poaceae | Lolium multiflorum | 2 | gene-QYE76_003830, gene-QYE76_043366 |
| Poaceae | Oryza coarctata | 3 | Oco07G002660, Oco08G002960, Ocoptg000061lG000070 |
| Poaceae | Oryza sativa | 3 | LOC_Os04g23890.2, LOC_Os11g01140.1, LOC_Os12g01140.1 |
| Poaceae | Paspalum vaginatum | 2 | gene-BS78_05G001200, gene-BS78_07G084800 |
| Poaceae | Puccinellia tenuiflora | 4 | Pt_Chr0303144, Pt_Chr0303196, Pt_Chr0404815, Pt_Chr0705170 |
| Poaceae | Sporobolus alterniflorus | 5 | Chr07G022560, Chr21G008710, Chr23G016080, Chr26G003850 ... |
| Poaceae | Thinopyrum elongatum | 2 | Tel2E01G491700, Tel5E01G270700 |
| Poaceae | Triticum dicoccoides | 4 | gene_TRIDC2AG039210, gene_TRIDC2BG042220 ... |
| Poaceae | Triticum aestivum | 6 | TraesCS2A02G272400.1, TraesCS2B02G290500.1 ... |
| Poaceae | Zea mays | 2 | Zm00001eb042710_P003, Zm00001eb163120_P002 |
| Poaceae | Zoysia japonica | 2 | nbis-gene-25863, nbis-gene-8070 |
| Poaceae | Zoysia macrostachya | 2 | Zma_g21060, Zma_g24578 |
| Portulacaceae | Portulaca oleracea | 3 | evm.TU.LG02.1540, evm.TU.LG09.342, evm.TU.LG19.1382 |
| Posidoniaceae | Posidonia oceanica | 3 | gene.Posoc01g35500, gene.Posoc02g23820, gene.Posoc03g11970 |
| Rhizophoraceae | Bruguiera sexangula | 2 | evm.TU.Scaffold_13_RagTag.779, evm.TU.Scaffold_1_RagTag.1044 |
| Rhizophoraceae | Carallia pectinifolia | 2 | nbisL1-mrna-30259, nbisL1-mrna-6560 |
| Rhizophoraceae | Ceriops tagal | 2 | nbisL1-mrna-13434, nbisL1-mrna-19704 |
| Rhizophoraceae | Ceriops zippeliana | 2 | nbisL1-mrna-16150, nbisL1-mrna-21161 |
| Rhizophoraceae | Kandelia candel | 2 | evm.TU.utg000015l.455, evm.TU.utg000016l.887 |
| Rhizophoraceae | Kandelia obovata | 1 | Maker00015254 |
| Rhizophoraceae | Rhizophora apiculata | 2 | nbisL1-mrna-11071, nbisL1-mrna-4374 |
| Rhizophoraceae | Rhizophora mangle | 2 | nbisL1-mrna-15027, nbisL1-mrna-21778 |
| Salicaceae | Populus euphratica | 4 | populus_peu01127, populus_peu08384, populus_peu08385 ... |
| Solanaceae | Lycium barbarum | 2 | gene-LOC132600827, gene-LOC132645257 |
| Solanaceae | Solanum chilense | 2 | SOLCI002567500, SOLCI003173700 |
| Solanaceae | Solanum pennellii | 2 | gene-LOC107003486, gene-LOC107004580 |
| Tamaricaceae | Reaumuria soongarica | 1 | STRG.4869_chr03_+ |
| Tamaricaceae | Tamarix chinensis | 2 | TC10G0298, TC11G0028 |
| Zosteraceae | Zostera marina | 2 | Zosma02g21400.v3.1, Zosma04g17980.v3.1 |