halophFGD

Basic Information

Locus ID: Ag11G04251

Species & Taxonomic ID: Apium graveolens & 4045

Genome Assembly: GCA_009905375.1

Description: Protein kinase superfamily protein with octicosapeptide Phox Bem1p domain

Maps and Mapping Data

Chromosome	Start	End	Strand	ID
chr11	160555646	160557550	-	Ag11G04251

Protein Data

Protein Properties:

Theoretical pI	Molecular Weight	Instability Index	Aliphatic Index	GRAVY
6.54	26,640.67 Da	31.92	97.84	-0.19

Protein Domain:

Category	ID	Description	Start	End	Evalue/Score	InterPro ID
Pfam	PF07714	Protein tyrosine and serine/threonine kinase	53	231	2.1E-29	IPR001245
SUPERFAMILY	SSF56112	Protein kinase-like (PK-like)	44	233	6.7E-45	IPR011009
Gene3D	G3DSA:3.30.200.20	Phosphorylase Kinase; domain 1	44	137	5.5E-19	-
Gene3D	G3DSA:1.10.510.10	Transferase(Phosphotransferase) domain 1	138	235	3.8E-23	-
SMART	SM00220	serkin_6	51	236	2.0E-9	IPR000719
ProSiteProfiles	PS50011	Protein kinase domain profile.	51	236	26.350735	IPR000719
ProSitePatterns	PS00108	Serine/Threonine protein kinases active-site signature.	176	188	-	IPR008271

Gene Ontology

Biological Process:

GO:0006468 (protein phosphorylation)

Molecular Function:

GO:0004672 (protein kinase activity) GO:0005524 (ATP binding)

KEGG Pathway

KO Term:

K04422 (mitogen-activated protein kinase kinase kinase 13 [EC:2.7.11.25])

Pathway:

ko04010 (MAPK signaling pathway) map04010 (MAPK signaling pathway)

Best hit

Source	Best Hit ID	Description
TAIR	AT3G46920.1	Protein kinase superfamily protein with octicosapeptide/Phox/Bem1p domain.
RefSeq	XP_022037525.1	uncharacterized protein LOC110940285 isoform X3 [Helianthus annuus]
Swiss-Prot	A0A2R6XIK6	RAF-like serine/threonine-protein kinase PRAF OS=Marchantia polymorpha OX=3197 GN=PRAF PE=1 SV=1
TrEMBL	A0A5B6Z5D1	Protein kinase domain-containing protein (Fragment) OS=Davidia involucrata OX=16924 GN=Din_008726 PE=3 SV=1

Expression

BioProject	Accession	TPM	Cultivar	Tissue	Development Stage	Sample Name	Description
PRJNA723697	SRX10692252	0	Shengqin NO.2	seed	S1-1	S1-1	initial formation stage (S1)
PRJNA723697	SRX10692254	0	Shengqin NO.2	seed	S1-3	S1-3	initial formation stage (S1)
PRJNA723697	SRX10692255	0	Shengqin NO.2	seed	S3-1	S3-1	middle development stage (S3)
PRJNA723697	SRX10692256	0	Shengqin NO.2	seed	S3-2	S3-2	middle development stage (S3)
PRJNA723697	SRX10692257	0	Shengqin NO.2	seed	S3-3	S3-3	middle development stage (S3)
PRJNA723697	SRX10692258	0	Shengqin NO.2	seed	S5-1	S5-1	maturation stage (S5)
PRJNA723697	SRX10692259	0	Shengqin NO.2	seed	S5-2	S5-2	maturation stage (S5)
PRJNA723697	SRX10692260	0	Shengqin NO.2	seed	S5-3	S5-3	maturation stage (S5)
PRJNA884666	SRX17729272	0	celery	anther		W99A-r1	male sterile lineÂ
PRJNA884666	SRX17729273	0	celery	anther		W99A-r2	male sterile lineÂ
PRJNA884666	SRX17729274	0	celery	anther		W99A-r3	male sterile lineÂ
PRJNA884666	SRX17729275	0	celery	anther		W99B-r1	maintainer line
PRJNA884666	SRX17729276	0.128262	celery	anther		W99B-r2	maintainer line
PRJNA884666	SRX17729277	0	celery	anther		W99B-r3	maintainer line
PRJNA884180	SRX17743889	0	var. secalinum Yablochny	collenchyma		Col_S1_rep1-1
PRJNA884180	SRX17748056	0	var. secalinum Yablochny	collenchyma		Col_S1_rep3	biological replicate 3
PRJNA884180	SRX17748057	0	var. secalinum Yablochny	collenchyma		Col_S1_rep4	biological replicate 4
PRJNA884180	SRX17748678	0	var. secalinum Yablochny	parenchyma		Par_S1_rep1	Biological replicate 1
PRJNA884180	SRX17748679	0	var. secalinum Yablochny	parenchyma		Par_S1_rep2	Biological replicate 2
PRJNA884180	SRX17748680	0	var. secalinum Yablochny	parenchyma		Par_S1_rep3	Biological replicate 3
PRJNA884180	SRX17748681	0	var. secalinum Yablochny	parenchyma		Par_S1_rep4	Biological replicate 4
PRJNA884180	SRX17748898	0	var. secalinum Yablochny	vascular bundle		Vas_S1_rep1	Biological replicate 1
PRJNA884180	SRX17748899	0	var. secalinum Yablochny	vascular bundle		Vas_S1_rep2	Biological replicate 2
PRJNA884180	SRX17748900	0	var. secalinum Yablochny	vascular bundle		Vas_S1_rep3	Biological replicate 3
PRJNA884180	SRX17748901	0	var. secalinum Yablochny	vascular bundle		Vas_S1_rep4	Biological replicate 4
PRJNA884180	SRX17749129	0	var. secalinum Yablochny	part of the celery petiole without collenchyma strands		Collenchyma-free_S1_rep1	Biological replicate 1
PRJNA884180	SRX17749130	0	var. secalinum Yablochny	part of the celery petiole without collenchyma strands		Collenchyma-free_S1_rep2	Biological replicate 2
PRJNA884180	SRX17749131	0	var. secalinum Yablochny	part of the celery petiole without collenchyma strands		Collenchyma-free_S1_rep3	Biological replicate 3
PRJNA884180	SRX17749132	0	var. secalinum Yablochny	part of the celery petiole without collenchyma strands		Collenchyma-free_S1_rep4	Biological replicate 4
PRJNA1124269	SRX24936411	0		leaf		CK1	replicate=biological replicate1
PRJNA1124269	SRX24936412	0		leaf		CK2	replicate=biological replicate2
PRJNA1124269	SRX24936413	0		leaf		CK3	replicate=biological replicate3
PRJNA1124269	SRX24936414	0		leaf		D1	replicate=biological replicate1
PRJNA1124269	SRX24936415	0.586022		leaf		D2	replicate=biological replicate2
PRJNA1124269	SRX24936416	0		leaf		D3	replicate=biological replicate3
PRJNA1124269	SRX24936417	0		leaf		MD1	replicate=biological replicate1
PRJNA1124269	SRX24936418	0		leaf		MD2	replicate=biological replicate2
PRJNA1124269	SRX24936419	0		leaf		MD3	replicate=biological replicate3
PRJNA387092	SRX2833309	0	shanghaihuangxin	leaf	leaves between 0.5 and 1 cm in breadth, folded;	stage 2
PRJNA387092	SRX2833321	0	shanghaihuangxin	leaf	leaves between 2and 2.5 cm in breadth, nearly unfolded, with clear stem exten-sion	stage 5
PRJNA387092	SRX2833323	0	shanghaihuangxin	leaf	leaves >3 cm, unfolded, with clearstem extension	stage 7
PRJNA543957	SRX5879598	0	Zhangzhou lvqing	stem		Se3	100 ppm Na2SeO4
PRJNA543957	SRX5879599	0	Zhangzhou lvqing	stem		Se2	100 ppm Na2SeO4
PRJNA543957	SRX5879600	0	Zhangzhou lvqing	stem		Mock2	mock
PRJNA543957	SRX5879601	0	Zhangzhou lvqing	stem		Mock1	mock
PRJNA543957	SRX5879602	0	Zhangzhou lvqing	stem		Se1	100 ppm Na2SeO4
PRJNA543957	SRX5879603	0	Zhangzhou lvqing	stem		Mock3	mock
PRJNA609149	SRX7815917	0.201768	Jinnan Shiqin	flower bud	early flower bud	early flower bud
PRJNA609149	SRX7815918	0	Jinnan Shiqin	flower bud	middle flower bud	middle flower bud
PRJNA609149	SRX7815919	0	Jinnan Shiqin	flower bud	early flowering period	early flowering period

Network

🔍 Co-expression Network

🔍 Protein-Protein Interaction Network

Orthology

Family	Species	Count	Orthologous Genes
Acanthaceae	Avicennia marina	1	jg31584
Aizoaceae	Mesembryanthemum crystallinum	1	gene_10572
Amaranthaceae	Atriplex hortensis	1	Ah014190
Amaranthaceae	Beta vulgaris	2	BVRB_8g189770, BVRB_8g192730
Amaranthaceae	Suaeda aralocaspica	1	GOSA_00011096
Amaranthaceae	Suaeda glauca	2	Sgl41857, Sgl46659
Amaranthaceae	Chenopodium album	3	gene:ENSEOMG00000009375, gene:ENSEOMG00000030482 ... gene:ENSEOMG00000044552
Amaranthaceae	Chenopodium quinoa	2	CQ.Regalona.r1.8AG0023300, CQ.Regalona.r1.8BG0019070
Anacardiaceae	Pistacia vera	1	pistato.v30179690
Apiaceae	Apium graveolens	6	Ag11G04251, Ag2G02869, Ag3G02723, Ag4G01359, Ag4G02866 ... AgUnG01317
Arecaceae	Cocos nucifera	3	COCNU_01G005630, COCNU_01G010200, COCNU_11G008220
Arecaceae	Phoenix dactylifera	4	gene-LOC103703666, gene-LOC103706458, gene-LOC103715979 ... gene-LOC120110830
Asparagaceae	Asparagus officinalis	3	AsparagusV1_01.94.V1.1, AsparagusV1_05.3319.V1.1 ... AsparagusV1_08.811.V1.1
Asteraceae	Flaveria trinervia	1	Ftri15G11468
Brassicaceae	Arabidopsis thaliana	1	AT3G46920.1
Casuarinaceae	Casuarina equisetifolia	1	Ceq03G2493
Casuarinaceae	Casuarina glauca	1	Cgl03G2630
Cymodoceaceae	Cymodocea nodosa	2	gene.Cymno01g06700, gene.Cymno02g05410
Hydrocharitaceae	Thalassia testudinum	1	gene.Thate04g09140
Nitrariaceae	Nitraria sibirica	1	evm.TU.LG07.120
Plantaginaceae	Plantago ovata	1	Pov_00000991
Plumbaginaceae	Limonium bicolor	3	Lb1G03774, Lb3G20127, Lb7G35244
Poaceae	Echinochloa crus-galli	6	AH06.2451, AH06.540, BH06.2249, BH06.587, CH06.2475 ... CH06.598
Poaceae	Eleusine coracana subsp. coracana	7	gene-QOZ80_6AG0511090, gene-QOZ80_6AG0546370 ... gene-QOZ80_6BG0499730, gene-QOZ80_9AG0685970, gene-QOZ80_9BG0712150, gene-QOZ80_9BG0712160, gene-QOZ80_9BG0712170
Poaceae	Hordeum vulgare	2	HORVU.MOREX.r3.7HG0658560.1, HORVU.MOREX.r3.7HG0744210.1
Poaceae	Lolium multiflorum	2	gene-QYE76_028258, gene-QYE76_036653
Poaceae	Oryza coarctata	4	Oco11G003700, Oco11G013840, Oco12G003700, Oco12G014030
Poaceae	Oryza sativa	2	LOC_Os06g08280.1, LOC_Os06g43840.1
Poaceae	Paspalum vaginatum	2	gene-BS78_10G063900, gene-BS78_10G207400
Poaceae	Puccinellia tenuiflora	4	Pt_Chr0207123, Pt_Chr0401563, Pt_Chr0405273, Pt_Ctg00035
Poaceae	Sporobolus alterniflorus	7	Chr02G030890, Chr05G008600, Chr0G000080, Chr10G019000 ... Chr11G003590, Chr11G021580, Chr21G001950
Poaceae	Thinopyrum elongatum	2	Tel7E01G295500, Tel7E01G881100
Poaceae	Triticum dicoccoides	4	gene_TRIDC7AG017680, gene_TRIDC7AG071830 ... gene_TRIDC7BG007000, gene_TRIDC7BG067230
Poaceae	Triticum aestivum	6	TraesCS7A02G145100.1, TraesCS7A02G511900.1 ... TraesCS7B02G047300.2, TraesCS7B02G423200.2, TraesCS7D02G146400.1, TraesCS7D02G500900.1
Poaceae	Zea mays	3	Zm00001eb268080_P004, Zm00001eb374870_P002 ... Zm00001eb386840_P001
Poaceae	Zoysia japonica	2	nbis-gene-40901, nbis-gene-5019
Poaceae	Zoysia macrostachya	2	Zma_g29222, Zma_g33143
Portulacaceae	Portulaca oleracea	2	evm.TU.LG04.1104, evm.TU.LG05.1648
Posidoniaceae	Posidonia oceanica	2	gene.Posoc02g23910, gene.Posoc03g12130
Rhizophoraceae	Bruguiera sexangula	2	evm.TU.Scaffold_10_RagTag.114, evm.TU.Scaffold_4_RagTag.2226
Rhizophoraceae	Carallia pectinifolia	1	nbisL1-mrna-25248
Rhizophoraceae	Ceriops tagal	2	nbisL1-mrna-13162, nbisL1-mrna-21292
Rhizophoraceae	Ceriops zippeliana	4	nbisL1-mrna-16550, nbisL1-mrna-16551, nbisL1-mrna-16552 ... nbisL1-mrna-4977
Rhizophoraceae	Kandelia candel	1	evm.TU.utg000008l.1308
Rhizophoraceae	Kandelia obovata	1	Maker00000803
Rhizophoraceae	Rhizophora apiculata	2	nbisL1-mrna-1875, nbisL1-mrna-23539
Rhizophoraceae	Rhizophora mangle	1	nbisL1-mrna-22261
Salicaceae	Populus euphratica	3	populus_peu05652, populus_peu05653, populus_peu12286
Solanaceae	Lycium barbarum	1	gene-LOC132603070
Solanaceae	Solanum chilense	1	SOLCI007338600
Solanaceae	Solanum pennellii	1	gene-LOC107026002
Tamaricaceae	Reaumuria soongarica	1	gene_8132
Tamaricaceae	Tamarix chinensis	1	TC10G1133
Zosteraceae	Zostera marina	1	Zosma03g01840.v3.1