Basic Information
Locus ID:
Ag11G04248
Species & Taxonomic ID:
Apium graveolens & 4045
Genome Assembly:
GCA_009905375.1
Description:
Protein of unknown function (DUF1635)
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr11 | 160511954 | 160513815 | + | Ag11G04248 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 7.06 | 34,567.66 Da | 57.10 | 75.36 | -0.54 |
Protein Domain:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT2G28690.1 | Protein of unknown function (DUF1635). | 0 |
| RefSeq | XP_017234355.1 | PREDICTED: uncharacterized protein LOC108208342 [Daucus carota subsp. sativus] | 0 |
| TrEMBL | A0A166DEI6 | RING-type domain-containing protein OS=Daucus carota subsp. sativus OX=79200 GN=DCAR_006005 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| PRJNA723697 | SRX10692252 | 0 | Shengqin NO.2 | seed | S1-1 | S1-1 | initial formation stage (S1) |
| PRJNA723697 | SRX10692254 | 0 | Shengqin NO.2 | seed | S1-3 | S1-3 | initial formation stage (S1) |
| PRJNA723697 | SRX10692255 | 0.19941 | Shengqin NO.2 | seed | S3-1 | S3-1 | middle development stage (S3) |
| PRJNA723697 | SRX10692256 | 0.152947 | Shengqin NO.2 | seed | S3-2 | S3-2 | middle development stage (S3) |
| PRJNA723697 | SRX10692257 | 0 | Shengqin NO.2 | seed | S3-3 | S3-3 | middle development stage (S3) |
| PRJNA723697 | SRX10692258 | 0.206438 | Shengqin NO.2 | seed | S5-1 | S5-1 | maturation stage (S5) |
| PRJNA723697 | SRX10692259 | 0.722104 | Shengqin NO.2 | seed | S5-2 | S5-2 | maturation stage (S5) |
| PRJNA723697 | SRX10692260 | 3.543048 | Shengqin NO.2 | seed | S5-3 | S5-3 | maturation stage (S5) |
| PRJNA884666 | SRX17729272 | 0.294392 | celery | anther | W99A-r1 | male sterile line | |
| PRJNA884666 | SRX17729273 | 0.117331 | celery | anther | W99A-r2 | male sterile line | |
| PRJNA884666 | SRX17729274 | 0.371862 | celery | anther | W99A-r3 | male sterile line | |
| PRJNA884666 | SRX17729275 | 0.287925 | celery | anther | W99B-r1 | maintainer line | |
| PRJNA884666 | SRX17729276 | 0.206302 | celery | anther | W99B-r2 | maintainer line | |
| PRJNA884666 | SRX17729277 | 0.212988 | celery | anther | W99B-r3 | maintainer line | |
| PRJNA884180 | SRX17743889 | 0.10198 | var. secalinum Yablochny | collenchyma | Col_S1_rep1-1 | ||
| PRJNA884180 | SRX17748056 | 0 | var. secalinum Yablochny | collenchyma | Col_S1_rep3 | biological replicate 3 | |
| PRJNA884180 | SRX17748057 | 0 | var. secalinum Yablochny | collenchyma | Col_S1_rep4 | biological replicate 4 | |
| PRJNA884180 | SRX17748678 | 0 | var. secalinum Yablochny | parenchyma | Par_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17748679 | 0.135798 | var. secalinum Yablochny | parenchyma | Par_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17748680 | 0 | var. secalinum Yablochny | parenchyma | Par_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17748681 | 0.107977 | var. secalinum Yablochny | parenchyma | Par_S1_rep4 | Biological replicate 4 | |
| PRJNA884180 | SRX17748898 | 0.082605 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17748899 | 0.17451 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17748900 | 0.372381 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17748901 | 0.098304 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep4 | Biological replicate 4 | |
| PRJNA884180 | SRX17749129 | 0.159751 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17749130 | 0 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17749131 | 0 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17749132 | 0 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep4 | Biological replicate 4 | |
| PRJNA1124269 | SRX24936411 | 0 | leaf | CK1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936412 | 0 | leaf | CK2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936413 | 0 | leaf | CK3 | replicate=biological replicate3 | ||
| PRJNA1124269 | SRX24936414 | 0.117432 | leaf | D1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936415 | 0.346859 | leaf | D2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936416 | 0.246567 | leaf | D3 | replicate=biological replicate3 | ||
| PRJNA1124269 | SRX24936417 | 1.39876 | leaf | MD1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936418 | 0.076891 | leaf | MD2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936419 | 0.748369 | leaf | MD3 | replicate=biological replicate3 | ||
| PRJNA387092 | SRX2833309 | 0 | shanghaihuangxin | leaf | leaves between 0.5 and 1 cm in breadth, folded; | stage 2 | |
| PRJNA387092 | SRX2833321 | 0 | shanghaihuangxin | leaf | leaves between 2and 2.5 cm in breadth, nearly unfolded, with clear stem exten-sion | stage 5 | |
| PRJNA387092 | SRX2833323 | 0 | shanghaihuangxin | leaf | leaves >3 cm, unfolded, with clearstem extension | stage 7 | |
| PRJNA543957 | SRX5879598 | 0 | Zhangzhou lvqing | stem | Se3 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879599 | 0 | Zhangzhou lvqing | stem | Se2 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879600 | 0 | Zhangzhou lvqing | stem | Mock2 | mock | |
| PRJNA543957 | SRX5879601 | 0 | Zhangzhou lvqing | stem | Mock1 | mock | |
| PRJNA543957 | SRX5879602 | 0 | Zhangzhou lvqing | stem | Se1 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879603 | 0.079724 | Zhangzhou lvqing | stem | Mock3 | mock | |
| PRJNA609149 | SRX7815917 | 0.087015 | Jinnan Shiqin | flower bud | early flower bud | early flower bud | |
| PRJNA609149 | SRX7815918 | 0.049505 | Jinnan Shiqin | flower bud | middle flower bud | middle flower bud | |
| PRJNA609149 | SRX7815919 | 0 | Jinnan Shiqin | flower bud | early flowering period | early flowering period |
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Acanthaceae | Avicennia marina | 4 | jg15642, jg35794, jg37953, jg8321 |
| Aizoaceae | Mesembryanthemum crystallinum | 3 | gene_15555, gene_7036, gene_7037 |
| Amaranthaceae | Atriplex hortensis | 2 | Ah028098, Ah028099 |
| Amaranthaceae | Beta vulgaris | 2 | BVRB_7g174570, BVRB_7g174580 |
| Amaranthaceae | Salicornia bigelovii | 4 | Sbi_jg1845, Sbi_jg1846, Sbi_jg34683, Sbi_jg34687 |
| Amaranthaceae | Salicornia europaea | 2 | Seu_jg2912, Seu_jg2913 |
| Amaranthaceae | Suaeda aralocaspica | 2 | GOSA_00003128, GOSA_00003129 |
| Amaranthaceae | Suaeda glauca | 4 | Sgl72951, Sgl72952, Sgl76491, Sgl76492 |
| Amaranthaceae | Chenopodium album | 4 | gene:ENSEOMG00000004503, gene:ENSEOMG00000037300 ... |
| Amaranthaceae | Chenopodium quinoa | 4 | CQ.Regalona.r1.7AG0002180, CQ.Regalona.r1.7AG0002190 ... |
| Apiaceae | Apium graveolens | 5 | Ag10G00510, Ag11G04248, Ag6G02333, Ag6G02336, AgUnG01169 |
| Arecaceae | Cocos nucifera | 2 | COCNU_04G002290, scaffold013737G000060 |
| Arecaceae | Phoenix dactylifera | 3 | gene-LOC103705937, gene-LOC103710703, gene-LOC103713413 |
| Asparagaceae | Asparagus officinalis | 2 | AsparagusV1_05.371.V1.1, AsparagusV1_07.308.V1.1 |
| Asteraceae | Flaveria trinervia | 2 | Ftri10G17252, Ftri12G09128 |
| Brassicaceae | Arabidopsis thaliana | 3 | AT2G28690.1, AT5G09940.1, AT5G59760.1 |
| Brassicaceae | Eutrema salsugineum | 4 | Thhalv10014545m.g.v1.0, Thhalv10015775m.g.v1.0 ... |
| Brassicaceae | Schrenkiella parvula | 4 | Sp4g11560.v2.2, Sp4g19740.v2.2, Sp6g21430.v2.2 ... |
| Brassicaceae | Brassica nigra | 8 | BniB02g039440.2N, BniB02g051950.2N, BniB05g026940.2N ... |
| Casuarinaceae | Casuarina equisetifolia | 1 | Ceq08G2277 |
| Casuarinaceae | Casuarina glauca | 1 | Cgl08G2451 |
| Cymodoceaceae | Cymodocea nodosa | 2 | gene.Cymno04g15510, gene.Cymno04g15540 |
| Hydrocharitaceae | Thalassia testudinum | 3 | gene.Thate01g08450, gene.Thate01g33650, gene.Thate06g01250 |
| Nitrariaceae | Nitraria sibirica | 1 | evm.TU.LG09.1337 |
| Plantaginaceae | Plantago ovata | 1 | Pov_00016120 |
| Plumbaginaceae | Limonium bicolor | 2 | Lb2G09060, Lb6G31117 |
| Poaceae | Echinochloa crus-galli | 8 | AH05.753, AH09.161, BH05.822, BH09.237, CH02.553, CH05.946 ... |
| Poaceae | Eleusine coracana subsp. coracana | 4 | gene-QOZ80_4AG0326960, gene-QOZ80_4BG0359010 ... |
| Poaceae | Hordeum vulgare | 3 | HORVU.MOREX.r3.1HG0008980.1, HORVU.MOREX.r3.3HG0330230.1 ... |
| Poaceae | Lolium multiflorum | 6 | gene-QYE76_008935, gene-QYE76_058451, gene-QYE76_058452 ... |
| Poaceae | Oryza coarctata | 4 | Oco07G000540, Oco08G000860, Oco09G000770, Oco10G000840 |
| Poaceae | Oryza sativa | 2 | LOC_Os04g05070.1, LOC_Os05g02450.1 |
| Poaceae | Paspalum vaginatum | 2 | gene-BS78_06G024100, gene-BS78_09G016500 |
| Poaceae | Puccinellia tenuiflora | 2 | Pt_Chr0502207, Pt_Chr0503662 |
| Poaceae | Sporobolus alterniflorus | 6 | Chr01G013570, Chr12G023220, Chr18G002480, Chr22G016410 ... |
| Poaceae | Thinopyrum elongatum | 3 | Tel1E01G089500, Tel1E01G557600, Tel2E01G052000 |
| Poaceae | Triticum dicoccoides | 3 | gene_TRIDC1AG004890, gene_TRIDC1BG006860 ... |
| Poaceae | Triticum aestivum | 9 | TraesCS1A02G042800.1, TraesCS1B02G055600.1 ... |
| Poaceae | Zea mays | 2 | Zm00001eb088820_P001, Zm00001eb266340_P003 |
| Poaceae | Zoysia japonica | 4 | nbis-gene-18348, nbis-gene-37387, nbis-gene-54068 ... |
| Poaceae | Zoysia macrostachya | 3 | Zma_g20863, Zma_g26284, Zma_g27587 |
| Portulacaceae | Portulaca oleracea | 1 | evm.TU.LG19.1400 |
| Posidoniaceae | Posidonia oceanica | 2 | gene.Posoc01g34710, gene.Posoc07g14750 |
| Rhizophoraceae | Bruguiera sexangula | 3 | evm.TU.Scaffold_12_RagTag.284, evm.TU.Scaffold_13_RagTag.805 ... |
| Rhizophoraceae | Carallia pectinifolia | 6 | nbisL1-mrna-24512, nbisL1-mrna-30230, nbisL1-mrna-30232 ... |
| Rhizophoraceae | Ceriops tagal | 3 | nbisL1-mrna-12641, nbisL1-mrna-18746, nbisL1-mrna-19683 |
| Rhizophoraceae | Ceriops zippeliana | 3 | nbisL1-mrna-16174, nbisL1-mrna-19563, nbisL1-mrna-9920 |
| Rhizophoraceae | Kandelia candel | 3 | add.evm.TU.utg000009l.309, evm.TU.utg000015l.468 ... |
| Rhizophoraceae | Kandelia obovata | 1 | Maker00015229 |
| Rhizophoraceae | Rhizophora apiculata | 4 | nbisL1-mrna-18762, nbisL1-mrna-18968, nbisL1-mrna-21876 ... |
| Rhizophoraceae | Rhizophora mangle | 5 | nbisL1-mrna-11791, nbisL1-mrna-13611, nbisL1-mrna-13614 ... |
| Salicaceae | Populus euphratica | 5 | populus_peu02164, populus_peu04740, populus_peu05999 ... |
| Solanaceae | Lycium barbarum | 3 | gene-LOC132599610, gene-LOC132605911, gene-LOC132643517 |
| Solanaceae | Solanum chilense | 2 | SOLCI001724900, SOLCI001758400 |
| Solanaceae | Solanum pennellii | 2 | gene-LOC107002931, gene-LOC107022556 |
| Tamaricaceae | Reaumuria soongarica | 1 | STRG.4887_chr03_- |
| Tamaricaceae | Tamarix chinensis | 3 | TC11G0046, TC11G0047, TC11G2245 |