Basic Information
Locus ID:
Ag11G04194
Species & Taxonomic ID:
Apium graveolens & 4045
Genome Assembly:
GCA_009905375.1
Description:
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr11 | 152345091 | 152347407 | - | Ag11G04194 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 9.54 | 20,228.03 Da | 38.97 | 94.23 | -0.36 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| MobiDBLite | mobidb-lite | consensus disorder prediction | 142 | 182 | - | - |
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT2G29180.1 | 0 | |
| RefSeq | XP_017233930.1 | PREDICTED: uncharacterized protein LOC108207975 [Daucus carota subsp. sativus] | 0 |
| TrEMBL | A0A166DD38 | Transmembrane protein OS=Daucus carota subsp. sativus OX=79200 GN=DCAR_005951 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| PRJNA723697 | SRX10692252 | 8.010099 | Shengqin NO.2 | seed | S1-1 | S1-1 | initial formation stage (S1) |
| PRJNA723697 | SRX10692254 | 6.432566 | Shengqin NO.2 | seed | S1-3 | S1-3 | initial formation stage (S1) |
| PRJNA723697 | SRX10692255 | 5.190971 | Shengqin NO.2 | seed | S3-1 | S3-1 | middle development stage (S3) |
| PRJNA723697 | SRX10692256 | 5.573827 | Shengqin NO.2 | seed | S3-2 | S3-2 | middle development stage (S3) |
| PRJNA723697 | SRX10692257 | 8.310313 | Shengqin NO.2 | seed | S3-3 | S3-3 | middle development stage (S3) |
| PRJNA723697 | SRX10692258 | 9.31351 | Shengqin NO.2 | seed | S5-1 | S5-1 | maturation stage (S5) |
| PRJNA723697 | SRX10692259 | 4.44172 | Shengqin NO.2 | seed | S5-2 | S5-2 | maturation stage (S5) |
| PRJNA723697 | SRX10692260 | 3.927591 | Shengqin NO.2 | seed | S5-3 | S5-3 | maturation stage (S5) |
| PRJNA884666 | SRX17729272 | 15.879028 | celery | anther | W99A-r1 | male sterile line | |
| PRJNA884666 | SRX17729273 | 12.421992 | celery | anther | W99A-r2 | male sterile line | |
| PRJNA884666 | SRX17729274 | 12.218053 | celery | anther | W99A-r3 | male sterile line | |
| PRJNA884666 | SRX17729275 | 14.42811 | celery | anther | W99B-r1 | maintainer line | |
| PRJNA884666 | SRX17729276 | 10.222911 | celery | anther | W99B-r2 | maintainer line | |
| PRJNA884666 | SRX17729277 | 10.797237 | celery | anther | W99B-r3 | maintainer line | |
| PRJNA884180 | SRX17743889 | 14.121082 | var. secalinum Yablochny | collenchyma | Col_S1_rep1-1 | ||
| PRJNA884180 | SRX17748056 | 15.368878 | var. secalinum Yablochny | collenchyma | Col_S1_rep3 | biological replicate 3 | |
| PRJNA884180 | SRX17748057 | 20.559092 | var. secalinum Yablochny | collenchyma | Col_S1_rep4 | biological replicate 4 | |
| PRJNA884180 | SRX17748678 | 33.81945 | var. secalinum Yablochny | parenchyma | Par_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17748679 | 36.388355 | var. secalinum Yablochny | parenchyma | Par_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17748680 | 19.305187 | var. secalinum Yablochny | parenchyma | Par_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17748681 | 18.004776 | var. secalinum Yablochny | parenchyma | Par_S1_rep4 | Biological replicate 4 | |
| PRJNA884180 | SRX17748898 | 15.292589 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17748899 | 17.61447 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17748900 | 21.716696 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17748901 | 19.003695 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep4 | Biological replicate 4 | |
| PRJNA884180 | SRX17749129 | 30.260841 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17749130 | 36.867527 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17749131 | 41.029228 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17749132 | 30.023636 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep4 | Biological replicate 4 | |
| PRJNA1124269 | SRX24936411 | 5.994291 | leaf | CK1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936412 | 18.192064 | leaf | CK2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936413 | 17.1621 | leaf | CK3 | replicate=biological replicate3 | ||
| PRJNA1124269 | SRX24936414 | 16.134007 | leaf | D1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936415 | 12.454956 | leaf | D2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936416 | 19.870096 | leaf | D3 | replicate=biological replicate3 | ||
| PRJNA1124269 | SRX24936417 | 5.466286 | leaf | MD1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936418 | 4.854224 | leaf | MD2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936419 | 3.137558 | leaf | MD3 | replicate=biological replicate3 | ||
| PRJNA387092 | SRX2833309 | 74.833832 | shanghaihuangxin | leaf | leaves between 0.5 and 1 cm in breadth, folded; | stage 2 | |
| PRJNA387092 | SRX2833321 | 38.063885 | shanghaihuangxin | leaf | leaves between 2and 2.5 cm in breadth, nearly unfolded, with clear stem exten-sion | stage 5 | |
| PRJNA387092 | SRX2833323 | 67.702141 | shanghaihuangxin | leaf | leaves >3 cm, unfolded, with clearstem extension | stage 7 | |
| PRJNA543957 | SRX5879598 | 9.604506 | Zhangzhou lvqing | stem | Se3 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879599 | 18.344883 | Zhangzhou lvqing | stem | Se2 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879600 | 19.348316 | Zhangzhou lvqing | stem | Mock2 | mock | |
| PRJNA543957 | SRX5879601 | 20.783772 | Zhangzhou lvqing | stem | Mock1 | mock | |
| PRJNA543957 | SRX5879602 | 10.291733 | Zhangzhou lvqing | stem | Se1 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879603 | 16.541468 | Zhangzhou lvqing | stem | Mock3 | mock | |
| PRJNA609149 | SRX7815917 | 26.119509 | Jinnan Shiqin | flower bud | early flower bud | early flower bud | |
| PRJNA609149 | SRX7815918 | 18.835344 | Jinnan Shiqin | flower bud | middle flower bud | middle flower bud | |
| PRJNA609149 | SRX7815919 | 18.710512 | Jinnan Shiqin | flower bud | early flowering period | early flowering period |
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Acanthaceae | Avicennia marina | 1 | jg25384 |
| Aizoaceae | Mesembryanthemum crystallinum | 1 | gene_6977 |
| Amaranthaceae | Atriplex hortensis | 1 | Ah027990 |
| Amaranthaceae | Beta vulgaris | 1 | BVRB_7g173480 |
| Amaranthaceae | Salicornia bigelovii | 2 | Sbi_jg1710, Sbi_jg34838 |
| Amaranthaceae | Salicornia europaea | 1 | Seu_jg3034 |
| Amaranthaceae | Suaeda aralocaspica | 1 | GOSA_00003235 |
| Amaranthaceae | Suaeda glauca | 2 | Sgl73068, Sgl76454 |
| Amaranthaceae | Chenopodium quinoa | 2 | CQ.Regalona.r1.7AG0003200, CQ.Regalona.r1.9BG0002430 |
| Anacardiaceae | Pistacia vera | 1 | pistato.v30063000 |
| Apiaceae | Apium graveolens | 1 | Ag11G04194 |
| Arecaceae | Cocos nucifera | 1 | COCNU_04G015680 |
| Arecaceae | Phoenix dactylifera | 1 | gene-LOC103715664 |
| Asteraceae | Flaveria trinervia | 1 | Ftri12G18708 |
| Brassicaceae | Arabidopsis thaliana | 1 | AT2G29180.1 |
| Brassicaceae | Eutrema salsugineum | 1 | Thhalv10017315m.g.v1.0 |
| Brassicaceae | Schrenkiella parvula | 1 | Sp4g11990.v2.2 |
| Brassicaceae | Brassica nigra | 1 | BniB08g031150.2N |
| Casuarinaceae | Casuarina equisetifolia | 1 | Ceq08G2096 |
| Casuarinaceae | Casuarina glauca | 1 | Cgl08G2191 |
| Cymodoceaceae | Cymodocea nodosa | 1 | gene.Cymno04g17610 |
| Nitrariaceae | Nitraria sibirica | 1 | evm.TU.LG09.1233 |
| Plantaginaceae | Plantago ovata | 1 | Pov_00016214 |
| Plumbaginaceae | Limonium bicolor | 1 | Lb7G33170 |
| Poaceae | Echinochloa crus-galli | 3 | AH01.4192, BH01.4507, CH01.4802 |
| Poaceae | Eleusine coracana subsp. coracana | 2 | gene-QOZ80_3AG0242720, gene-QOZ80_3BG0285470 |
| Poaceae | Hordeum vulgare | 1 | HORVU.MOREX.r3.4HG0388700.1 |
| Poaceae | Oryza coarctata | 2 | Oco05G009410, Oco06G009760 |
| Poaceae | Oryza sativa | 1 | LOC_Os03g16470.3 |
| Poaceae | Paspalum vaginatum | 1 | gene-BS78_01G403100 |
| Poaceae | Puccinellia tenuiflora | 2 | Pt_Chr0102277, Pt_Chr0102307 |
| Poaceae | Sporobolus alterniflorus | 2 | Chr04G007650, Chr07G003970 |
| Poaceae | Thinopyrum elongatum | 1 | Tel4E01G367300 |
| Poaceae | Triticum dicoccoides | 1 | gene_TRIDC4BG037320 |
| Poaceae | Triticum aestivum | 3 | TraesCS4A02G095600.1, TraesCS4B02G209000.1 ... |
| Poaceae | Zea mays | 6 | Zm00001eb214060_P001, Zm00001eb299580_P001 ... |
| Poaceae | Zoysia japonica | 2 | nbis-gene-2099, nbis-gene-3765 |
| Poaceae | Zoysia macrostachya | 1 | Zma_g3935 |
| Portulacaceae | Portulaca oleracea | 2 | evm.TU.LG19.885, evm.TU.LG24.882 |
| Posidoniaceae | Posidonia oceanica | 1 | gene.Posoc01g38730 |
| Rhizophoraceae | Bruguiera sexangula | 1 | evm.TU.Scaffold_12_RagTag.223 |
| Rhizophoraceae | Carallia pectinifolia | 1 | nbisL1-mrna-24579 |
| Rhizophoraceae | Ceriops tagal | 1 | nbisL1-mrna-20856 |
| Rhizophoraceae | Ceriops zippeliana | 1 | nbisL1-mrna-19507 |
| Rhizophoraceae | Kandelia candel | 1 | evm.TU.utg000027l.433 |
| Rhizophoraceae | Kandelia obovata | 1 | Maker00017884 |
| Rhizophoraceae | Rhizophora apiculata | 1 | nbisL1-mrna-18946 |
| Rhizophoraceae | Rhizophora mangle | 1 | nbisL1-mrna-11732 |
| Salicaceae | Populus euphratica | 2 | populus_peu02093, populus_peu35705 |
| Solanaceae | Lycium barbarum | 1 | gene-LOC132641781 |
| Solanaceae | Solanum chilense | 1 | SOLCI005143600 |
| Solanaceae | Solanum pennellii | 1 | gene-LOC107018729 |
| Tamaricaceae | Reaumuria soongarica | 1 | STRG.7696_chr05_+ |
| Tamaricaceae | Tamarix chinensis | 1 | TC11G2063 |
| Zosteraceae | Zostera marina | 1 | Zosma03g20590.v3.1 |