Basic Information
Locus ID:
Ag11G04191
Species & Taxonomic ID:
Apium graveolens & 4045
Genome Assembly:
GCA_009905375.1
Description:
NB-ARC domain
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr11 | 151854910 | 151856675 | + | Ag11G04191 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.21 | 48,627.29 Da | 40.02 | 81.60 | -0.39 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Gene3D | G3DSA:3.10.20.310 | membrane protein fhac | 155 | 231 | 4.2E-6 | - |
| Gene3D | G3DSA:3.10.20.310 | membrane protein fhac | 357 | 439 | 3.0E-9 | - |
| Gene3D | G3DSA:3.10.20.310 | membrane protein fhac | 284 | 356 | 2.0E-6 | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 39 | 62 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 21 | 62 | - | - |
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G46740.1 | translocon at the outer envelope membrane of chloroplasts 75-III. Component of the translocon outer membrane (TOC) complex. Forms the outer envelope translocation channel (beta-barrel). Plays a role in preprotein conductance. Imported into chloroplast. Expressed in young dividing photosynthetic tissues. Knockout mutants are embryo lethal with arrested development at the two-cell stage. Knockout mutants have abnormal etioplasts. | 0 |
| RefSeq | XP_017235598.1 | PREDICTED: protein TOC75-3, chloroplastic-like [Daucus carota subsp. sativus] | 0 |
| Q9STE8 | Protein TOC75-3, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=TOC75-3 PE=1 SV=1 | 0 | |
| TrEMBL | A0A166DD18 | Omp85 domain-containing protein OS=Daucus carota subsp. sativus OX=79200 GN=DCAR_005948 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| PRJNA723697 | SRX10692252 | 0 | Shengqin NO.2 | seed | S1-1 | S1-1 | initial formation stage (S1) |
| PRJNA723697 | SRX10692254 | 0 | Shengqin NO.2 | seed | S1-3 | S1-3 | initial formation stage (S1) |
| PRJNA723697 | SRX10692255 | 0 | Shengqin NO.2 | seed | S3-1 | S3-1 | middle development stage (S3) |
| PRJNA723697 | SRX10692256 | 0 | Shengqin NO.2 | seed | S3-2 | S3-2 | middle development stage (S3) |
| PRJNA723697 | SRX10692257 | 0 | Shengqin NO.2 | seed | S3-3 | S3-3 | middle development stage (S3) |
| PRJNA723697 | SRX10692258 | 0.166419 | Shengqin NO.2 | seed | S5-1 | S5-1 | maturation stage (S5) |
| PRJNA723697 | SRX10692259 | 0.159336 | Shengqin NO.2 | seed | S5-2 | S5-2 | maturation stage (S5) |
| PRJNA723697 | SRX10692260 | 0.366742 | Shengqin NO.2 | seed | S5-3 | S5-3 | maturation stage (S5) |
| PRJNA884666 | SRX17729272 | 0 | celery | anther | W99A-r1 | male sterile line | |
| PRJNA884666 | SRX17729273 | 0.124406 | celery | anther | W99A-r2 | male sterile line | |
| PRJNA884666 | SRX17729274 | 0.350374 | celery | anther | W99A-r3 | male sterile line | |
| PRJNA884666 | SRX17729275 | 1.628598 | celery | anther | W99B-r1 | maintainer line | |
| PRJNA884666 | SRX17729276 | 2.239594 | celery | anther | W99B-r2 | maintainer line | |
| PRJNA884666 | SRX17729277 | 2.815662 | celery | anther | W99B-r3 | maintainer line | |
| PRJNA884180 | SRX17743889 | 0 | var. secalinum Yablochny | collenchyma | Col_S1_rep1-1 | ||
| PRJNA884180 | SRX17748056 | 0 | var. secalinum Yablochny | collenchyma | Col_S1_rep3 | biological replicate 3 | |
| PRJNA884180 | SRX17748057 | 0 | var. secalinum Yablochny | collenchyma | Col_S1_rep4 | biological replicate 4 | |
| PRJNA884180 | SRX17748678 | 0 | var. secalinum Yablochny | parenchyma | Par_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17748679 | 0 | var. secalinum Yablochny | parenchyma | Par_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17748680 | 0 | var. secalinum Yablochny | parenchyma | Par_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17748681 | 0 | var. secalinum Yablochny | parenchyma | Par_S1_rep4 | Biological replicate 4 | |
| PRJNA884180 | SRX17748898 | 0 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17748899 | 0 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17748900 | 0 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17748901 | 0 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep4 | Biological replicate 4 | |
| PRJNA884180 | SRX17749129 | 0 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17749130 | 0 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17749131 | 0 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17749132 | 0 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep4 | Biological replicate 4 | |
| PRJNA1124269 | SRX24936411 | 0 | leaf | CK1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936412 | 0 | leaf | CK2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936413 | 0 | leaf | CK3 | replicate=biological replicate3 | ||
| PRJNA1124269 | SRX24936414 | 0.043745 | leaf | D1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936415 | 0.422444 | leaf | D2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936416 | 0 | leaf | D3 | replicate=biological replicate3 | ||
| PRJNA1124269 | SRX24936417 | 0.117155 | leaf | MD1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936418 | 0 | leaf | MD2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936419 | 0 | leaf | MD3 | replicate=biological replicate3 | ||
| PRJNA387092 | SRX2833309 | 0 | shanghaihuangxin | leaf | leaves between 0.5 and 1 cm in breadth, folded; | stage 2 | |
| PRJNA387092 | SRX2833321 | 0 | shanghaihuangxin | leaf | leaves between 2and 2.5 cm in breadth, nearly unfolded, with clear stem exten-sion | stage 5 | |
| PRJNA387092 | SRX2833323 | 0 | shanghaihuangxin | leaf | leaves >3 cm, unfolded, with clearstem extension | stage 7 | |
| PRJNA543957 | SRX5879598 | 0.314537 | Zhangzhou lvqing | stem | Se3 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879599 | 0 | Zhangzhou lvqing | stem | Se2 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879600 | 0 | Zhangzhou lvqing | stem | Mock2 | mock | |
| PRJNA543957 | SRX5879601 | 0 | Zhangzhou lvqing | stem | Mock1 | mock | |
| PRJNA543957 | SRX5879602 | 0.097717 | Zhangzhou lvqing | stem | Se1 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879603 | 0 | Zhangzhou lvqing | stem | Mock3 | mock | |
| PRJNA609149 | SRX7815917 | 0.027816 | Jinnan Shiqin | flower bud | early flower bud | early flower bud | |
| PRJNA609149 | SRX7815918 | 0.205873 | Jinnan Shiqin | flower bud | middle flower bud | middle flower bud | |
| PRJNA609149 | SRX7815919 | 0.227525 | Jinnan Shiqin | flower bud | early flowering period | early flowering period |
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Acanthaceae | Avicennia marina | 1 | jg8373 |
| Aizoaceae | Mesembryanthemum crystallinum | 1 | gene_6975 |
| Amaranthaceae | Atriplex hortensis | 1 | Ah027986 |
| Amaranthaceae | Beta vulgaris | 1 | BVRB_7g173430 |
| Amaranthaceae | Salicornia bigelovii | 2 | Sbi_jg1705, Sbi_jg34847 |
| Amaranthaceae | Salicornia europaea | 1 | Seu_jg3038 |
| Amaranthaceae | Suaeda aralocaspica | 1 | GOSA_00003239 |
| Amaranthaceae | Suaeda glauca | 2 | Sgl72920, Sgl76460 |
| Amaranthaceae | Chenopodium album | 3 | gene:ENSEOMG00000007949, gene:ENSEOMG00000038505 ... |
| Amaranthaceae | Chenopodium quinoa | 3 | CQ.Regalona.r1.7AG0003240, CQ.Regalona.r1.8AG0005180 ... |
| Anacardiaceae | Pistacia vera | 2 | pistato.v30062940, pistato.v30064080 |
| Apiaceae | Apium graveolens | 2 | Ag11G04191, Ag11G04192 |
| Arecaceae | Cocos nucifera | 2 | COCNU_04G015650, COCNU_13G000620 |
| Arecaceae | Phoenix dactylifera | 3 | gene-LOC103715666, gene-LOC103716747, gene-LOC120103964 |
| Asparagaceae | Asparagus officinalis | 4 | AsparagusV1_01.2314.V1.1, AsparagusV1_03.2333.V1.1 ... |
| Asteraceae | Flaveria trinervia | 2 | Ftri11G27062, Ftri12G02847 |
| Brassicaceae | Arabidopsis thaliana | 4 | AT1G35860.1, AT1G35880.1, AT3G46740.1, AT4G09080.1 |
| Brassicaceae | Eutrema salsugineum | 1 | Thhalv10002403m.g.v1.0 |
| Brassicaceae | Schrenkiella parvula | 1 | Sp5g14980.v2.2 |
| Brassicaceae | Brassica nigra | 4 | BniB02g038840.2N, BniB05g053050.2N, BniB06g024600.2N ... |
| Casuarinaceae | Casuarina equisetifolia | 1 | Ceq08G2085 |
| Casuarinaceae | Casuarina glauca | 2 | Cgl08G2175, Cgl08G2180 |
| Cymodoceaceae | Cymodocea nodosa | 1 | gene.Cymno15g07500 |
| Dunaliellaceae | Dunaliella salina | 1 | Dusal.0023s00025.v1.0 |
| Hydrocharitaceae | Thalassia testudinum | 1 | gene.Thate06g00430 |
| Malvaceae | Hibiscus hamabo Siebold & Zucc. | 1 | nbisL1-mrna-516 |
| Nitrariaceae | Nitraria sibirica | 1 | evm.TU.LG09.1228 |
| Plantaginaceae | Plantago ovata | 1 | Pov_00016219 |
| Plumbaginaceae | Limonium bicolor | 1 | Lb6G31596 |
| Poaceae | Echinochloa crus-galli | 8 | AH01.4194, AH03.3463, BH01.4509, BH03.3670, BH04.860 ... |
| Poaceae | Eleusine coracana subsp. coracana | 3 | gene-QOZ80_3AG0242680, gene-QOZ80_3BG0285530 ... |
| Poaceae | Lolium multiflorum | 2 | gene-QYE76_065051, gene-QYE76_069040 |
| Poaceae | Oryza coarctata | 5 | Oco05G009390, Oco06G009730, Oco22G000530, Oco23G000240 ... |
| Poaceae | Oryza sativa | 3 | LOC_Os03g16440.1, LOC_Os11g02460.1, LOC_Os12g02385.1 |
| Poaceae | Paspalum vaginatum | 2 | gene-BS78_01G403400, gene-BS78_02G324700 |
| Poaceae | Puccinellia tenuiflora | 4 | Pt_Chr0102275, Pt_Chr0102305, Pt_Chr0103788, Pt_Ctg00101 |
| Poaceae | Sporobolus alterniflorus | 4 | Chr04G007620, Chr07G004000, Chr07G018820, Chr12G008770 |
| Poaceae | Thinopyrum elongatum | 2 | Tel4E01G193500, Tel4E01G367900 |
| Poaceae | Triticum dicoccoides | 4 | gene_TRIDC4AG013010, gene_TRIDC4AG030970 ... |
| Poaceae | Triticum aestivum | 5 | TraesCS4A02G095300.1, TraesCS4A02G194000.1 ... |
| Poaceae | Zea mays | 2 | Zm00001eb012140_P001, Zm00001eb397790_P002 |
| Poaceae | Zoysia japonica | 1 | nbis-gene-2101 |
| Poaceae | Zoysia macrostachya | 1 | Zma_g1539 |
| Portulacaceae | Portulaca oleracea | 2 | evm.TU.LG03.1874, evm.TU.LG14.2 |
| Posidoniaceae | Posidonia oceanica | 1 | gene.Posoc07g15420 |
| Rhizophoraceae | Bruguiera sexangula | 2 | evm.TU.Scaffold_12_RagTag.219, evm.TU.Scaffold_13_RagTag.881 |
| Rhizophoraceae | Carallia pectinifolia | 2 | nbisL1-mrna-24584, nbisL1-mrna-30136 |
| Rhizophoraceae | Ceriops tagal | 1 | nbisL1-mrna-15633 |
| Rhizophoraceae | Ceriops zippeliana | 1 | nbisL1-mrna-16254 |
| Rhizophoraceae | Kandelia candel | 1 | evm.TU.utg000015l.520 |
| Rhizophoraceae | Kandelia obovata | 1 | Maker00015345 |
| Rhizophoraceae | Rhizophora apiculata | 1 | nbisL1-mrna-4437 |
| Rhizophoraceae | Rhizophora mangle | 2 | nbisL1-mrna-11728, nbisL1-mrna-20901 |
| Salicaceae | Populus euphratica | 2 | populus_peu03861, populus_peu34696 |
| Solanaceae | Lycium barbarum | 1 | gene-LOC132605779 |
| Solanaceae | Solanum pennellii | 1 | gene-LOC107023140 |
| Tamaricaceae | Reaumuria soongarica | 2 | gene_14278, gene_3289 |
| Tamaricaceae | Tamarix chinensis | 2 | TC11G0117, TC11G2060 |
| Zosteraceae | Zostera marina | 1 | Zosma02g00430.v3.1 |