Basic Information
Locus ID:
Ag11G04156
Species & Taxonomic ID:
Apium graveolens & 4045
Genome Assembly:
GCA_009905375.1
Description:
Mitochondrial import inner membrane translocase subunit
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr11 | 146618626 | 146624049 | + | Ag11G04156 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.55 | 9,651.09 Da | 18.34 | 63.81 | -0.49 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF02953 | Tim10/DDP family zinc finger | 18 | 76 | 1.1E-20 | IPR004217 |
| SUPERFAMILY | SSF144122 | Tim10-like | 22 | 77 | 1.11E-19 | IPR035427 |
| Gene3D | G3DSA:1.10.287.810 | Mitochondrial import inner membrane translocase subunit tim13 like domains | 10 | 79 | 8.5E-24 | IPR035427 |
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT2G29530.1 | Tim10/DDP family zinc finger protein. Encodes a small zinc finger-like protein that is a component of the mitochondrial protein import apparatus. | 0 |
| RefSeq | XP_017232058.1 | PREDICTED: mitochondrial import inner membrane translocase subunit TIM10 [Daucus carota subsp. sativus] | 0 |
| Q9ZW33 | Mitochondrial import inner membrane translocase subunit TIM10 OS=Arabidopsis thaliana OX=3702 GN=TIM10 PE=1 SV=1 | 0 | |
| TrEMBL | A0A166DCC9 | zf-Tim10_DDP domain-containing protein OS=Daucus carota subsp. sativus OX=79200 GN=DCAR_005918 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| PRJNA723697 | SRX10692252 | 18.582514 | Shengqin NO.2 | seed | S1-1 | S1-1 | initial formation stage (S1) |
| PRJNA723697 | SRX10692254 | 14.211626 | Shengqin NO.2 | seed | S1-3 | S1-3 | initial formation stage (S1) |
| PRJNA723697 | SRX10692255 | 12.568356 | Shengqin NO.2 | seed | S3-1 | S3-1 | middle development stage (S3) |
| PRJNA723697 | SRX10692256 | 10.967143 | Shengqin NO.2 | seed | S3-2 | S3-2 | middle development stage (S3) |
| PRJNA723697 | SRX10692257 | 13.054777 | Shengqin NO.2 | seed | S3-3 | S3-3 | middle development stage (S3) |
| PRJNA723697 | SRX10692258 | 10.626154 | Shengqin NO.2 | seed | S5-1 | S5-1 | maturation stage (S5) |
| PRJNA723697 | SRX10692259 | 11.044933 | Shengqin NO.2 | seed | S5-2 | S5-2 | maturation stage (S5) |
| PRJNA723697 | SRX10692260 | 10.238821 | Shengqin NO.2 | seed | S5-3 | S5-3 | maturation stage (S5) |
| PRJNA884666 | SRX17729272 | 18.383726 | celery | anther | W99A-r1 | male sterile line | |
| PRJNA884666 | SRX17729273 | 16.726267 | celery | anther | W99A-r2 | male sterile line | |
| PRJNA884666 | SRX17729274 | 17.821617 | celery | anther | W99A-r3 | male sterile line | |
| PRJNA884666 | SRX17729275 | 19.008039 | celery | anther | W99B-r1 | maintainer line | |
| PRJNA884666 | SRX17729276 | 20.548729 | celery | anther | W99B-r2 | maintainer line | |
| PRJNA884666 | SRX17729277 | 17.248062 | celery | anther | W99B-r3 | maintainer line | |
| PRJNA884180 | SRX17743889 | 19.020296 | var. secalinum Yablochny | collenchyma | Col_S1_rep1-1 | ||
| PRJNA884180 | SRX17748056 | 24.202135 | var. secalinum Yablochny | collenchyma | Col_S1_rep3 | biological replicate 3 | |
| PRJNA884180 | SRX17748057 | 36.073586 | var. secalinum Yablochny | collenchyma | Col_S1_rep4 | biological replicate 4 | |
| PRJNA884180 | SRX17748678 | 17.089174 | var. secalinum Yablochny | parenchyma | Par_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17748679 | 16.611107 | var. secalinum Yablochny | parenchyma | Par_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17748680 | 21.079559 | var. secalinum Yablochny | parenchyma | Par_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17748681 | 17.229309 | var. secalinum Yablochny | parenchyma | Par_S1_rep4 | Biological replicate 4 | |
| PRJNA884180 | SRX17748898 | 37.846226 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17748899 | 41.636307 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17748900 | 43.160084 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17748901 | 32.890308 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep4 | Biological replicate 4 | |
| PRJNA884180 | SRX17749129 | 18.723564 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17749130 | 21.628048 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17749131 | 18.846689 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17749132 | 26.239279 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep4 | Biological replicate 4 | |
| PRJNA1124269 | SRX24936411 | 10.19232 | leaf | CK1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936412 | 13.264286 | leaf | CK2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936413 | 15.097335 | leaf | CK3 | replicate=biological replicate3 | ||
| PRJNA1124269 | SRX24936414 | 10.7293 | leaf | D1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936415 | 24.68244 | leaf | D2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936416 | 11.491107 | leaf | D3 | replicate=biological replicate3 | ||
| PRJNA1124269 | SRX24936417 | 9.507698 | leaf | MD1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936418 | 11.955956 | leaf | MD2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936419 | 11.383817 | leaf | MD3 | replicate=biological replicate3 | ||
| PRJNA387092 | SRX2833309 | 14.747553 | shanghaihuangxin | leaf | leaves between 0.5 and 1 cm in breadth, folded; | stage 2 | |
| PRJNA387092 | SRX2833321 | 9.286598 | shanghaihuangxin | leaf | leaves between 2and 2.5 cm in breadth, nearly unfolded, with clear stem exten-sion | stage 5 | |
| PRJNA387092 | SRX2833323 | 4.520076 | shanghaihuangxin | leaf | leaves >3 cm, unfolded, with clearstem extension | stage 7 | |
| PRJNA543957 | SRX5879598 | 31.227623 | Zhangzhou lvqing | stem | Se3 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879599 | 19.744106 | Zhangzhou lvqing | stem | Se2 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879600 | 27.283564 | Zhangzhou lvqing | stem | Mock2 | mock | |
| PRJNA543957 | SRX5879601 | 17.593115 | Zhangzhou lvqing | stem | Mock1 | mock | |
| PRJNA543957 | SRX5879602 | 47.357937 | Zhangzhou lvqing | stem | Se1 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879603 | 15.33522 | Zhangzhou lvqing | stem | Mock3 | mock | |
| PRJNA609149 | SRX7815917 | 50.281513 | Jinnan Shiqin | flower bud | early flower bud | early flower bud | |
| PRJNA609149 | SRX7815918 | 45.70998 | Jinnan Shiqin | flower bud | middle flower bud | middle flower bud | |
| PRJNA609149 | SRX7815919 | 51.98077 | Jinnan Shiqin | flower bud | early flowering period | early flowering period |
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Acanthaceae | Avicennia marina | 2 | jg14815, jg3308 |
| Aizoaceae | Mesembryanthemum crystallinum | 2 | gene_6938, gene_8091 |
| Amaranthaceae | Atriplex hortensis | 1 | Ah027929 |
| Amaranthaceae | Beta vulgaris | 2 | BVRB_7g157010, BVRB_7g172970 |
| Amaranthaceae | Salicornia bigelovii | 4 | Sbi_jg1663, Sbi_jg2167, Sbi_jg34344, Sbi_jg34885 |
| Amaranthaceae | Salicornia europaea | 2 | Seu_jg2609, Seu_jg3082 |
| Amaranthaceae | Suaeda aralocaspica | 2 | GOSA_00003291, GOSA_00005890 |
| Amaranthaceae | Suaeda glauca | 4 | Sgl71113, Sgl72880, Sgl74696, Sgl76415 |
| Amaranthaceae | Chenopodium album | 6 | gene:ENSEOMG00000005444, gene:ENSEOMG00000008254 ... |
| Amaranthaceae | Chenopodium quinoa | 3 | CQ.Regalona.r1.7AG0022960, CQ.Regalona.r1.7BG0025580 ... |
| Apiaceae | Apium graveolens | 1 | Ag11G04156 |
| Arecaceae | Phoenix dactylifera | 2 | gene-LOC103715503, gene-LOC103722641 |
| Asparagaceae | Asparagus officinalis | 1 | AsparagusV1_02.62.V1.1 |
| Asteraceae | Flaveria trinervia | 1 | Ftri10G15930 |
| Brassicaceae | Arabidopsis thaliana | 1 | AT2G29530.3 |
| Brassicaceae | Eutrema salsugineum | 1 | Thhalv10017490m.g.v1.0 |
| Brassicaceae | Schrenkiella parvula | 1 | Sp4g12260.v2.2 |
| Brassicaceae | Brassica nigra | 2 | BniB01g014310.2N, BniB06g018750.2N |
| Casuarinaceae | Casuarina equisetifolia | 1 | Ceq08G1967 |
| Casuarinaceae | Casuarina glauca | 1 | Cgl08G2044 |
| Cymodoceaceae | Cymodocea nodosa | 1 | gene.Cymno15g07680 |
| Dunaliellaceae | Dunaliella salina | 1 | Dusal.0035s00033.v1.0 |
| Hydrocharitaceae | Thalassia testudinum | 1 | gene.Thate02g15050 |
| Malvaceae | Hibiscus hamabo Siebold & Zucc. | 1 | nbisL1-mrna-505 |
| Nitrariaceae | Nitraria sibirica | 1 | evm.TU.LG09.1166 |
| Plantaginaceae | Plantago ovata | 3 | Pov_00002817, Pov_00006456, Pov_00013997 |
| Plumbaginaceae | Limonium bicolor | 1 | Lb3G20430 |
| Poaceae | Echinochloa crus-galli | 5 | AH03.698, BH01.305, BH03.825, CH01.144, CH03.923 |
| Poaceae | Eleusine coracana subsp. coracana | 4 | gene-QOZ80_3AG0210090, gene-QOZ80_3BG0255240 ... |
| Poaceae | Lolium multiflorum | 1 | gene-QYE76_060610 |
| Poaceae | Oryza coarctata | 3 | Oco05G027720, Oco06G028680, Oco14G005110 |
| Poaceae | Oryza sativa | 2 | LOC_Os03g61019.1, LOC_Os07g13950.1 |
| Poaceae | Paspalum vaginatum | 2 | gene-BS78_01G026500, gene-BS78_02G109600 |
| Poaceae | Puccinellia tenuiflora | 1 | Pt_Chr0105863 |
| Poaceae | Sporobolus alterniflorus | 6 | Chr01G001250, Chr04G031690, Chr07G030760, Chr12G032900 ... |
| Poaceae | Thinopyrum elongatum | 1 | Tel5E01G773300 |
| Poaceae | Triticum dicoccoides | 2 | gene_TRIDC5AG069370, gene_TRIDC5BG074940 |
| Poaceae | Triticum aestivum | 1 | TraesCS5D02G501200.1 |
| Poaceae | Zea mays | 2 | Zm00001eb063090_P002, Zm00001eb211450_P001 |
| Poaceae | Zoysia japonica | 3 | nbis-gene-14536, nbis-gene-16640, nbis-gene-49407 |
| Poaceae | Zoysia macrostachya | 4 | Zma_g140, Zma_g2460, Zma_g26800, Zma_g4959 |
| Portulacaceae | Portulaca oleracea | 3 | evm.TU.LG07.786, evm.TU.LG15.143, evm.TU.LG24.922 |
| Posidoniaceae | Posidonia oceanica | 2 | gene.Posoc07g15650, gene.Posoc08g13340 |
| Rhizophoraceae | Bruguiera sexangula | 1 | evm.TU.Scaffold_13_RagTag.847 |
| Rhizophoraceae | Carallia pectinifolia | 1 | nbisL1-mrna-19071 |
| Rhizophoraceae | Ceriops tagal | 1 | nbisL1-mrna-19640 |
| Rhizophoraceae | Ceriops zippeliana | 1 | nbisL1-mrna-16228 |
| Rhizophoraceae | Kandelia candel | 1 | evm.TU.utg000015l.503 |
| Rhizophoraceae | Kandelia obovata | 1 | Maker00015579 |
| Rhizophoraceae | Rhizophora apiculata | 1 | nbisL1-mrna-4423 |
| Rhizophoraceae | Rhizophora mangle | 1 | nbisL1-mrna-20933 |
| Salicaceae | Populus euphratica | 1 | populus_peu02068 |
| Solanaceae | Lycium barbarum | 2 | gene-LOC132605833, gene-LOC132630615 |
| Solanaceae | Solanum chilense | 2 | SOLCI003087100, SOLCI004672600 |
| Solanaceae | Solanum pennellii | 2 | gene-LOC107023423, gene-LOC107029406 |
| Tamaricaceae | Reaumuria soongarica | 1 | gene_3301 |
| Tamaricaceae | Tamarix chinensis | 1 | TC11G0151 |
| Zosteraceae | Zostera marina | 1 | Zosma05g11720.v3.1 |