halophFGD

Basic Information

Locus ID: Ag11G04148

Species & Taxonomic ID: Apium graveolens & 4045

Genome Assembly: GCA_009905375.1

Description: ATPase WRNIP1-like

Maps and Mapping Data

Chromosome	Start	End	Strand	ID
chr11	144011039	144013048	+	Ag11G04148

Protein Data

Protein Properties:

Theoretical pI	Molecular Weight	Instability Index	Aliphatic Index	GRAVY
7.92	61,989.22 Da	49.00	87.66	-0.25

Protein Domain:

Category	ID	Description	Start	End	Evalue/Score	InterPro ID
CDD	cd18139	HLD_clamp_RarA	275	374	1.62557E-14	-
CDD	cd00009	AAA	132	268	3.50902E-16	-
Pfam	PF16193	AAA C-terminal domain	308	399	2.3E-25	IPR032423
Pfam	PF00004	ATPase family associated with various cellular activities (AAA)	157	269	1.3E-14	IPR003959
Pfam	PF12002	MgsA AAA+ ATPase C terminal	400	548	1.4E-56	IPR021886
SUPERFAMILY	SSF52540	P-loop containing nucleoside triphosphate hydrolases	118	346	1.95E-42	IPR027417
SUPERFAMILY	SSF48019	post-AAA+ oligomerization domain-like	384	552	1.25E-66	IPR008921
SUPERFAMILY	SSF46934	UBA-like	7	53	4.15E-8	IPR009060
Gene3D	G3DSA:1.10.3710.10	-	478	559	4.0E-20	-
Gene3D	G3DSA:3.40.50.300	-	107	273	4.1E-40	IPR027417
Gene3D	G3DSA:1.10.8.60	-	275	353	9.8E-13	-
Gene3D	G3DSA:1.20.272.10	-	374	477	6.6E-45	-
Gene3D	G3DSA:1.10.8.10	-	2	57	2.3E-8	-
SMART	SM00382	AAA_5	152	275	9.4E-8	IPR003593
SMART	SM00165	uba_6	4	42	2.4E-4	IPR015940
ProSiteProfiles	PS50030	Ubiquitin-associated domain (UBA) profile.	1	43	12.305923	IPR015940
PRINTS	PR00819	CbxX/CfqX superfamily signature	207	226	5.9E-5	IPR000641
PRINTS	PR00819	CbxX/CfqX superfamily signature	326	338	5.9E-5	IPR000641
PRINTS	PR00819	CbxX/CfqX superfamily signature	155	170	5.9E-5	IPR000641

Gene Ontology

Biological Process:

GO:0006260 (DNA replication)

Molecular Function:

GO:0003677 (DNA binding) GO:0005515 (protein binding) GO:0005524 (ATP binding) GO:0016887 (ATP hydrolysis activity)

KEGG Pathway

KO Term:

K07478 (putative ATPase)

Best hit

Source	Best Hit ID	Description
TAIR	AT1G24290.1	AAA-type ATPase family protein.
RefSeq	XP_017232976.1	PREDICTED: ATPase WRNIP1 [Daucus carota subsp. sativus]
Swiss-Prot	Q8CG07	ATPase WRNIP1 OS=Rattus norvegicus OX=10116 GN=Wrnip1 PE=1 SV=1
TrEMBL	A0A161X252	UBA domain-containing protein OS=Daucus carota subsp. sativus OX=79200 GN=DCAR_005902 PE=3 SV=1

Expression

BioProject	Accession	TPM	Cultivar	Tissue	Development Stage	Sample Name	Description
PRJNA723697	SRX10692252	0.352351	Shengqin NO.2	seed	S1-1	S1-1	initial formation stage (S1)
PRJNA723697	SRX10692254	0.343169	Shengqin NO.2	seed	S1-3	S1-3	initial formation stage (S1)
PRJNA723697	SRX10692255	0.632252	Shengqin NO.2	seed	S3-1	S3-1	middle development stage (S3)
PRJNA723697	SRX10692256	0.874273	Shengqin NO.2	seed	S3-2	S3-2	middle development stage (S3)
PRJNA723697	SRX10692257	1.379155	Shengqin NO.2	seed	S3-3	S3-3	middle development stage (S3)
PRJNA723697	SRX10692258	2.068092	Shengqin NO.2	seed	S5-1	S5-1	maturation stage (S5)
PRJNA723697	SRX10692259	1.554448	Shengqin NO.2	seed	S5-2	S5-2	maturation stage (S5)
PRJNA723697	SRX10692260	1.218268	Shengqin NO.2	seed	S5-3	S5-3	maturation stage (S5)
PRJNA884666	SRX17729272	4.174859	celery	anther		W99A-r1	male sterile lineÂ
PRJNA884666	SRX17729273	3.912251	celery	anther		W99A-r2	male sterile lineÂ
PRJNA884666	SRX17729274	4.055802	celery	anther		W99A-r3	male sterile lineÂ
PRJNA884666	SRX17729275	4.302868	celery	anther		W99B-r1	maintainer line
PRJNA884666	SRX17729276	3.111712	celery	anther		W99B-r2	maintainer line
PRJNA884666	SRX17729277	2.972634	celery	anther		W99B-r3	maintainer line
PRJNA884180	SRX17743889	0.266896	var. secalinum Yablochny	collenchyma		Col_S1_rep1-1
PRJNA884180	SRX17748056	0.064358	var. secalinum Yablochny	collenchyma		Col_S1_rep3	biological replicate 3
PRJNA884180	SRX17748057	0.712963	var. secalinum Yablochny	collenchyma		Col_S1_rep4	biological replicate 4
PRJNA884180	SRX17748678	0.290861	var. secalinum Yablochny	parenchyma		Par_S1_rep1	Biological replicate 1
PRJNA884180	SRX17748679	0.219172	var. secalinum Yablochny	parenchyma		Par_S1_rep2	Biological replicate 2
PRJNA884180	SRX17748680	0.697991	var. secalinum Yablochny	parenchyma		Par_S1_rep3	Biological replicate 3
PRJNA884180	SRX17748681	1.241536	var. secalinum Yablochny	parenchyma		Par_S1_rep4	Biological replicate 4
PRJNA884180	SRX17748898	1.647963	var. secalinum Yablochny	vascular bundle		Vas_S1_rep1	Biological replicate 1
PRJNA884180	SRX17748899	1.494657	var. secalinum Yablochny	vascular bundle		Vas_S1_rep2	Biological replicate 2
PRJNA884180	SRX17748900	1.447008	var. secalinum Yablochny	vascular bundle		Vas_S1_rep3	Biological replicate 3
PRJNA884180	SRX17748901	0.983932	var. secalinum Yablochny	vascular bundle		Vas_S1_rep4	Biological replicate 4
PRJNA884180	SRX17749129	0.629584	var. secalinum Yablochny	part of the celery petiole without collenchyma strands		Collenchyma-free_S1_rep1	Biological replicate 1
PRJNA884180	SRX17749130	0.395969	var. secalinum Yablochny	part of the celery petiole without collenchyma strands		Collenchyma-free_S1_rep2	Biological replicate 2
PRJNA884180	SRX17749131	0.688994	var. secalinum Yablochny	part of the celery petiole without collenchyma strands		Collenchyma-free_S1_rep3	Biological replicate 3
PRJNA884180	SRX17749132	1.271181	var. secalinum Yablochny	part of the celery petiole without collenchyma strands		Collenchyma-free_S1_rep4	Biological replicate 4
PRJNA1124269	SRX24936411	0.618782		leaf		CK1	replicate=biological replicate1
PRJNA1124269	SRX24936412	0.534247		leaf		CK2	replicate=biological replicate2
PRJNA1124269	SRX24936413	0.777886		leaf		CK3	replicate=biological replicate3
PRJNA1124269	SRX24936414	1.727902		leaf		D1	replicate=biological replicate1
PRJNA1124269	SRX24936415	1.726764		leaf		D2	replicate=biological replicate2
PRJNA1124269	SRX24936416	1.777941		leaf		D3	replicate=biological replicate3
PRJNA1124269	SRX24936417	1.307683		leaf		MD1	replicate=biological replicate1
PRJNA1124269	SRX24936418	0.527522		leaf		MD2	replicate=biological replicate2
PRJNA1124269	SRX24936419	1.315053		leaf		MD3	replicate=biological replicate3
PRJNA387092	SRX2833309	0.896847	shanghaihuangxin	leaf	leaves between 0.5 and 1 cm in breadth, folded;	stage 2
PRJNA387092	SRX2833321	0.195206	shanghaihuangxin	leaf	leaves between 2and 2.5 cm in breadth, nearly unfolded, with clear stem exten-sion	stage 5
PRJNA387092	SRX2833323	0.227254	shanghaihuangxin	leaf	leaves >3 cm, unfolded, with clearstem extension	stage 7
PRJNA543957	SRX5879598	0.437658	Zhangzhou lvqing	stem		Se3	100 ppm Na2SeO4
PRJNA543957	SRX5879599	0.369819	Zhangzhou lvqing	stem		Se2	100 ppm Na2SeO4
PRJNA543957	SRX5879600	1.241443	Zhangzhou lvqing	stem		Mock2	mock
PRJNA543957	SRX5879601	0.700139	Zhangzhou lvqing	stem		Mock1	mock
PRJNA543957	SRX5879602	2.681035	Zhangzhou lvqing	stem		Se1	100 ppm Na2SeO4
PRJNA543957	SRX5879603	0.987915	Zhangzhou lvqing	stem		Mock3	mock
PRJNA609149	SRX7815917	2.139373	Jinnan Shiqin	flower bud	early flower bud	early flower bud
PRJNA609149	SRX7815918	1.971895	Jinnan Shiqin	flower bud	middle flower bud	middle flower bud
PRJNA609149	SRX7815919	1.984493	Jinnan Shiqin	flower bud	early flowering period	early flowering period

Network

🔍 Co-expression Network

🔍 Protein-Protein Interaction Network

Orthology

Family	Species	Count	Orthologous Genes
Acanthaceae	Avicennia marina	1	jg19016
Aizoaceae	Mesembryanthemum crystallinum	1	gene_25097
Amaranthaceae	Atriplex hortensis	1	Ah027059
Amaranthaceae	Beta vulgaris	1	BVRB_6g132400
Amaranthaceae	Salicornia bigelovii	3	Sbi_jg13485, Sbi_jg13486, Sbi_jg52394
Amaranthaceae	Salicornia europaea	1	Seu_jg9457
Amaranthaceae	Suaeda aralocaspica	1	GOSA_00023135
Amaranthaceae	Suaeda glauca	2	Sgl33479, Sgl38840
Amaranthaceae	Chenopodium album	3	gene:ENSEOMG00000003817, gene:ENSEOMG00000004173 ... gene:ENSEOMG00000027457
Amaranthaceae	Chenopodium quinoa	1	CQ.Regalona.r1.6AG0021810
Anacardiaceae	Pistacia vera	2	pistato.v30279280, pistato.v30280870
Apiaceae	Apium graveolens	1	Ag11G04148
Arecaceae	Cocos nucifera	1	COCNU_01G003070
Arecaceae	Phoenix dactylifera	1	gene-LOC103716204
Asparagaceae	Asparagus officinalis	1	AsparagusV1_03.2604.V1.1
Asteraceae	Flaveria trinervia	1	Ftri12G00566
Brassicaceae	Arabidopsis thaliana	1	AT1G24290.1
Brassicaceae	Eutrema salsugineum	1	Thhalv10009719m.g.v1.0
Brassicaceae	Schrenkiella parvula	1	Sp1g23470.v2.2
Brassicaceae	Brassica nigra	1	BniB03g032490.2N
Casuarinaceae	Casuarina glauca	1	Cgl09G2293
Cymodoceaceae	Cymodocea nodosa	1	gene.Cymno06g12230
Hydrocharitaceae	Thalassia testudinum	1	gene.Thate09g20630
Nitrariaceae	Nitraria sibirica	1	evm.TU.LG08.373
Plantaginaceae	Plantago ovata	1	Pov_00031704
Portulacaceae	Portulaca oleracea	2	evm.TU.LG18.1508, evm.TU.LG20.370
Posidoniaceae	Posidonia oceanica	1	gene.Posoc03g03940
Rhizophoraceae	Bruguiera sexangula	1	evm.TU.Scaffold_12_RagTag.1049
Rhizophoraceae	Carallia pectinifolia	1	nbisL1-mrna-23736
Rhizophoraceae	Ceriops tagal	1	nbisL1-mrna-6311
Rhizophoraceae	Ceriops zippeliana	1	nbisL1-mrna-21742
Rhizophoraceae	Kandelia candel	2	add.evm.TU.utg000027l.1, add.evm.TU.utg000027l.2
Rhizophoraceae	Kandelia obovata	2	Maker00017371, Maker00017425
Rhizophoraceae	Rhizophora apiculata	1	nbisL1-mrna-20993
Salicaceae	Populus euphratica	1	populus_peu18404
Solanaceae	Lycium barbarum	1	gene-LOC132633167
Solanaceae	Solanum chilense	1	SOLCI006476400
Solanaceae	Solanum pennellii	1	gene-LOC107013066
Tamaricaceae	Reaumuria soongarica	1	gene_10264
Tamaricaceae	Tamarix chinensis	1	TC04G0341
Zosteraceae	Zostera marina	1	Zosma06g23610.v3.1