Basic Information
Locus ID:
Ag11G04067
Species & Taxonomic ID:
Apium graveolens & 4045
Genome Assembly:
GCA_009905375.1
Description:
Belongs to the NPH3 family
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr11 | 135035518 | 135037489 | - | Ag11G04067 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.76 | 34,568.92 Da | 62.11 | 93.04 | 0.01 |
Protein Domain:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G44820.1 | Phototropic-responsive NPH3 family protein. | 0 |
| RefSeq | XP_017248824.1 | PREDICTED: BTB/POZ domain-containing protein At3g44820 [Daucus carota subsp. sativus] | 0 |
| Q9FYC8 | BTB/POZ domain-containing protein At3g44820 OS=Arabidopsis thaliana OX=3702 GN=At3g44820 PE=2 SV=2 | 0 | |
| TrEMBL | A0A7J7FSM4 | NPH3 domain-containing protein OS=Camellia sinensis OX=4442 GN=HYC85_031980 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| PRJNA723697 | SRX10692252 | 15.924146 | Shengqin NO.2 | seed | S1-1 | S1-1 | initial formation stage (S1) |
| PRJNA723697 | SRX10692254 | 18.953264 | Shengqin NO.2 | seed | S1-3 | S1-3 | initial formation stage (S1) |
| PRJNA723697 | SRX10692255 | 23.072382 | Shengqin NO.2 | seed | S3-1 | S3-1 | middle development stage (S3) |
| PRJNA723697 | SRX10692256 | 21.930603 | Shengqin NO.2 | seed | S3-2 | S3-2 | middle development stage (S3) |
| PRJNA723697 | SRX10692257 | 22.203754 | Shengqin NO.2 | seed | S3-3 | S3-3 | middle development stage (S3) |
| PRJNA723697 | SRX10692258 | 39.365875 | Shengqin NO.2 | seed | S5-1 | S5-1 | maturation stage (S5) |
| PRJNA723697 | SRX10692259 | 24.42371 | Shengqin NO.2 | seed | S5-2 | S5-2 | maturation stage (S5) |
| PRJNA723697 | SRX10692260 | 27.199886 | Shengqin NO.2 | seed | S5-3 | S5-3 | maturation stage (S5) |
| PRJNA884666 | SRX17729272 | 9.59981 | celery | anther | W99A-r1 | male sterile line | |
| PRJNA884666 | SRX17729273 | 12.610744 | celery | anther | W99A-r2 | male sterile line | |
| PRJNA884666 | SRX17729274 | 20.035021 | celery | anther | W99A-r3 | male sterile line | |
| PRJNA884666 | SRX17729275 | 2.063754 | celery | anther | W99B-r1 | maintainer line | |
| PRJNA884666 | SRX17729276 | 1.428308 | celery | anther | W99B-r2 | maintainer line | |
| PRJNA884666 | SRX17729277 | 1.290356 | celery | anther | W99B-r3 | maintainer line | |
| PRJNA884180 | SRX17743889 | 4.425381 | var. secalinum Yablochny | collenchyma | Col_S1_rep1-1 | ||
| PRJNA884180 | SRX17748056 | 2.444511 | var. secalinum Yablochny | collenchyma | Col_S1_rep3 | biological replicate 3 | |
| PRJNA884180 | SRX17748057 | 3.454697 | var. secalinum Yablochny | collenchyma | Col_S1_rep4 | biological replicate 4 | |
| PRJNA884180 | SRX17748678 | 11.707447 | var. secalinum Yablochny | parenchyma | Par_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17748679 | 6.731401 | var. secalinum Yablochny | parenchyma | Par_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17748680 | 4.971189 | var. secalinum Yablochny | parenchyma | Par_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17748681 | 13.853868 | var. secalinum Yablochny | parenchyma | Par_S1_rep4 | Biological replicate 4 | |
| PRJNA884180 | SRX17748898 | 5.768775 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17748899 | 2.813652 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17748900 | 0.752003 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17748901 | 3.476701 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep4 | Biological replicate 4 | |
| PRJNA884180 | SRX17749129 | 0.568486 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17749130 | 0.481785 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17749131 | 9.777429 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17749132 | 4.821067 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep4 | Biological replicate 4 | |
| PRJNA1124269 | SRX24936411 | 10.976077 | leaf | CK1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936412 | 31.532698 | leaf | CK2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936413 | 15.728542 | leaf | CK3 | replicate=biological replicate3 | ||
| PRJNA1124269 | SRX24936414 | 26.590374 | leaf | D1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936415 | 8.293472 | leaf | D2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936416 | 19.852127 | leaf | D3 | replicate=biological replicate3 | ||
| PRJNA1124269 | SRX24936417 | 8.60046 | leaf | MD1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936418 | 5.372143 | leaf | MD2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936419 | 4.867579 | leaf | MD3 | replicate=biological replicate3 | ||
| PRJNA387092 | SRX2833309 | 16.500446 | shanghaihuangxin | leaf | leaves between 0.5 and 1 cm in breadth, folded; | stage 2 | |
| PRJNA387092 | SRX2833321 | 14.725107 | shanghaihuangxin | leaf | leaves between 2and 2.5 cm in breadth, nearly unfolded, with clear stem exten-sion | stage 5 | |
| PRJNA387092 | SRX2833323 | 14.127094 | shanghaihuangxin | leaf | leaves >3 cm, unfolded, with clearstem extension | stage 7 | |
| PRJNA543957 | SRX5879598 | 35.759693 | Zhangzhou lvqing | stem | Se3 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879599 | 18.912708 | Zhangzhou lvqing | stem | Se2 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879600 | 4.467441 | Zhangzhou lvqing | stem | Mock2 | mock | |
| PRJNA543957 | SRX5879601 | 61.153252 | Zhangzhou lvqing | stem | Mock1 | mock | |
| PRJNA543957 | SRX5879602 | 24.312563 | Zhangzhou lvqing | stem | Se1 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879603 | 1.622721 | Zhangzhou lvqing | stem | Mock3 | mock | |
| PRJNA609149 | SRX7815917 | 16.033062 | Jinnan Shiqin | flower bud | early flower bud | early flower bud | |
| PRJNA609149 | SRX7815918 | 15.202651 | Jinnan Shiqin | flower bud | middle flower bud | middle flower bud | |
| PRJNA609149 | SRX7815919 | 14.305827 | Jinnan Shiqin | flower bud | early flowering period | early flowering period |
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Acanthaceae | Avicennia marina | 3 | jg37576, jg8190, jg8193 |
| Aizoaceae | Mesembryanthemum crystallinum | 1 | gene_26043 |
| Amaranthaceae | Atriplex hortensis | 1 | Ah011505 |
| Amaranthaceae | Beta vulgaris | 1 | BVRB_9g210820 |
| Amaranthaceae | Salicornia bigelovii | 2 | Sbi_jg11911, Sbi_jg46856 |
| Amaranthaceae | Salicornia europaea | 1 | Seu_jg21151 |
| Amaranthaceae | Suaeda aralocaspica | 1 | GOSA_00009480 |
| Amaranthaceae | Suaeda glauca | 2 | Sgl80332, Sgl82798 |
| Amaranthaceae | Chenopodium album | 2 | gene:ENSEOMG00000018009, gene:ENSEOMG00000038908 |
| Amaranthaceae | Chenopodium quinoa | 2 | CQ.Regalona.r1.9AG0010550, CQ.Regalona.r1.9BG0011900 |
| Anacardiaceae | Pistacia vera | 2 | pistato.v30057310, pistato.v30064720 |
| Apiaceae | Apium graveolens | 2 | Ag11G04067, Ag2G01024 |
| Arecaceae | Cocos nucifera | 1 | COCNU_03G001930 |
| Arecaceae | Phoenix dactylifera | 1 | gene-LOC103723840 |
| Asparagaceae | Asparagus officinalis | 1 | AsparagusV1_02.881.V1.1 |
| Asteraceae | Flaveria trinervia | 2 | Ftri12G06748, Ftri17G04475 |
| Brassicaceae | Arabidopsis thaliana | 1 | AT3G44820.1 |
| Brassicaceae | Eutrema salsugineum | 1 | Thhalv10002437m.g.v1.0 |
| Brassicaceae | Schrenkiella parvula | 1 | Sp5g16380.v2.2 |
| Brassicaceae | Brassica nigra | 1 | BniB05g051360.2N |
| Casuarinaceae | Casuarina equisetifolia | 1 | Ceq05G1712 |
| Casuarinaceae | Casuarina glauca | 1 | Cgl05G1714 |
| Nitrariaceae | Nitraria sibirica | 2 | evm.TU.LG09.777, evm.TU.LG09.778 |
| Plantaginaceae | Plantago ovata | 1 | Pov_00015870 |
| Plumbaginaceae | Limonium bicolor | 1 | Lb3G19922 |
| Portulacaceae | Portulaca oleracea | 2 | evm.TU.LG07.1573, evm.TU.LG15.1642 |
| Posidoniaceae | Posidonia oceanica | 1 | gene.Posoc05g23150 |
| Rhizophoraceae | Bruguiera sexangula | 2 | evm.TU.Scaffold_12_RagTag.596, evm.TU.Scaffold_13_RagTag.447 |
| Rhizophoraceae | Carallia pectinifolia | 2 | nbisL1-mrna-24128, nbisL1-mrna-30676 |
| Rhizophoraceae | Ceriops tagal | 1 | nbisL1-mrna-2698 |
| Rhizophoraceae | Ceriops zippeliana | 1 | nbisL1-mrna-22075 |
| Rhizophoraceae | Kandelia candel | 1 | evm.TU.utg000015l.231 |
| Rhizophoraceae | Kandelia obovata | 1 | Maker00015716 |
| Rhizophoraceae | Rhizophora apiculata | 2 | nbisL1-mrna-19040, nbisL1-mrna-4139 |
| Rhizophoraceae | Rhizophora mangle | 2 | nbisL1-mrna-12072, nbisL1-mrna-22184 |
| Salicaceae | Populus euphratica | 3 | populus_peu08549, populus_peu08550, populus_peu36789 |
| Solanaceae | Lycium barbarum | 1 | gene-LOC132600513 |
| Solanaceae | Solanum chilense | 1 | SOLCI002623700 |
| Solanaceae | Solanum pennellii | 1 | gene-LOC107005161 |
| Tamaricaceae | Reaumuria soongarica | 1 | gene_8602 |
| Tamaricaceae | Tamarix chinensis | 1 | TC03G1864 |
| Zosteraceae | Zostera marina | 1 | Zosma05g03550.v3.1 |