halophFGD

Basic Information

Locus ID: Ag11G04063

Species & Taxonomic ID: Apium graveolens & 4045

Genome Assembly: GCA_009905375.1

Description: LRR receptor-like serine threonine-protein kinase

Maps and Mapping Data

Chromosome	Start	End	Strand	ID
chr11	134633423	134634699	+	Ag11G04063

Protein Data

Protein Properties:

Theoretical pI	Molecular Weight	Instability Index	Aliphatic Index	GRAVY
9.60	42,039.77 Da	38.20	107.49	0.19

Protein Domain:

Category	ID	Description	Start	End	Evalue/Score	InterPro ID
Pfam	PF08263	Leucine rich repeat N-terminal domain	11	50	3.2E-7	IPR013210
Pfam	PF00560	Leucine Rich Repeat	131	152	0.042	IPR001611
Pfam	PF13516	Leucine Rich repeat	174	189	0.4	IPR001611
SUPERFAMILY	SSF52058	L domain-like	13	352	2.38E-44	-
Gene3D	G3DSA:3.80.10.10	Ribonuclease Inhibitor	11	174	9.3E-34	IPR032675
Gene3D	G3DSA:3.80.10.10	Ribonuclease Inhibitor	175	349	8.2E-28	IPR032675

Gene Ontology

Molecular Function:

GO:0005515 (protein binding)

Best hit

Source	Best Hit ID	Description
TAIR	AT1G03440.1	Leucine-rich repeat (LRR) family protein.
RefSeq	XP_017233972.1	PREDICTED: probably inactive leucine-rich repeat receptor-like protein kinase At3g28040 [Daucus carota subsp. sativus]
TrEMBL	A0A162ARX5	LRRNT_2 domain-containing protein OS=Daucus carota subsp. sativus OX=79200 GN=DCAR_005830 PE=4 SV=1

Expression

BioProject	Accession	TPM	Cultivar	Tissue	Development Stage	Sample Name	Description
PRJNA723697	SRX10692252	1.68076	Shengqin NO.2	seed	S1-1	S1-1	initial formation stage (S1)
PRJNA723697	SRX10692254	1.012669	Shengqin NO.2	seed	S1-3	S1-3	initial formation stage (S1)
PRJNA723697	SRX10692255	0.20437	Shengqin NO.2	seed	S3-1	S3-1	middle development stage (S3)
PRJNA723697	SRX10692256	0.445087	Shengqin NO.2	seed	S3-2	S3-2	middle development stage (S3)
PRJNA723697	SRX10692257	0.049526	Shengqin NO.2	seed	S3-3	S3-3	middle development stage (S3)
PRJNA723697	SRX10692258	0.169137	Shengqin NO.2	seed	S5-1	S5-1	maturation stage (S5)
PRJNA723697	SRX10692259	0	Shengqin NO.2	seed	S5-2	S5-2	maturation stage (S5)
PRJNA723697	SRX10692260	0	Shengqin NO.2	seed	S5-3	S5-3	maturation stage (S5)
PRJNA884666	SRX17729272	7.917762	celery	anther		W99A-r1	male sterile lineÂ
PRJNA884666	SRX17729273	9.325683	celery	anther		W99A-r2	male sterile lineÂ
PRJNA884666	SRX17729274	10.454988	celery	anther		W99A-r3	male sterile lineÂ
PRJNA884666	SRX17729275	7.203693	celery	anther		W99B-r1	maintainer line
PRJNA884666	SRX17729276	5.511224	celery	anther		W99B-r2	maintainer line
PRJNA884666	SRX17729277	3.972246	celery	anther		W99B-r3	maintainer line
PRJNA884180	SRX17743889	0	var. secalinum Yablochny	collenchyma		Col_S1_rep1-1
PRJNA884180	SRX17748056	0.147439	var. secalinum Yablochny	collenchyma		Col_S1_rep3	biological replicate 3
PRJNA884180	SRX17748057	0.416653	var. secalinum Yablochny	collenchyma		Col_S1_rep4	biological replicate 4
PRJNA884180	SRX17748678	1.896666	var. secalinum Yablochny	parenchyma		Par_S1_rep1	Biological replicate 1
PRJNA884180	SRX17748679	2.502242	var. secalinum Yablochny	parenchyma		Par_S1_rep2	Biological replicate 2
PRJNA884180	SRX17748680	2.14176	var. secalinum Yablochny	parenchyma		Par_S1_rep3	Biological replicate 3
PRJNA884180	SRX17748681	1.742909	var. secalinum Yablochny	parenchyma		Par_S1_rep4	Biological replicate 4
PRJNA884180	SRX17748898	1.052371	var. secalinum Yablochny	vascular bundle		Vas_S1_rep1	Biological replicate 1
PRJNA884180	SRX17748899	2.210736	var. secalinum Yablochny	vascular bundle		Vas_S1_rep2	Biological replicate 2
PRJNA884180	SRX17748900	1.383786	var. secalinum Yablochny	vascular bundle		Vas_S1_rep3	Biological replicate 3
PRJNA884180	SRX17748901	1.700444	var. secalinum Yablochny	vascular bundle		Vas_S1_rep4	Biological replicate 4
PRJNA884180	SRX17749129	1.824229	var. secalinum Yablochny	part of the celery petiole without collenchyma strands		Collenchyma-free_S1_rep1	Biological replicate 1
PRJNA884180	SRX17749130	1.928745	var. secalinum Yablochny	part of the celery petiole without collenchyma strands		Collenchyma-free_S1_rep2	Biological replicate 2
PRJNA884180	SRX17749131	0.50519	var. secalinum Yablochny	part of the celery petiole without collenchyma strands		Collenchyma-free_S1_rep3	Biological replicate 3
PRJNA884180	SRX17749132	1.754429	var. secalinum Yablochny	part of the celery petiole without collenchyma strands		Collenchyma-free_S1_rep4	Biological replicate 4
PRJNA1124269	SRX24936411	0.363003		leaf		CK1	replicate=biological replicate1
PRJNA1124269	SRX24936412	0.395046		leaf		CK2	replicate=biological replicate2
PRJNA1124269	SRX24936413	0.569905		leaf		CK3	replicate=biological replicate3
PRJNA1124269	SRX24936414	1.116284		leaf		D1	replicate=biological replicate1
PRJNA1124269	SRX24936415	4.626545		leaf		D2	replicate=biological replicate2
PRJNA1124269	SRX24936416	1.692265		leaf		D3	replicate=biological replicate3
PRJNA1124269	SRX24936417	0.037872		leaf		MD1	replicate=biological replicate1
PRJNA1124269	SRX24936418	0.04306		leaf		MD2	replicate=biological replicate2
PRJNA1124269	SRX24936419	0.272346		leaf		MD3	replicate=biological replicate3
PRJNA387092	SRX2833309	0.87714	shanghaihuangxin	leaf	leaves between 0.5 and 1 cm in breadth, folded;	stage 2
PRJNA387092	SRX2833321	1.370084	shanghaihuangxin	leaf	leaves between 2and 2.5 cm in breadth, nearly unfolded, with clear stem exten-sion	stage 5
PRJNA387092	SRX2833323	0.099625	shanghaihuangxin	leaf	leaves >3 cm, unfolded, with clearstem extension	stage 7
PRJNA543957	SRX5879598	0.09828	Zhangzhou lvqing	stem		Se3	100 ppm Na2SeO4
PRJNA543957	SRX5879599	0	Zhangzhou lvqing	stem		Se2	100 ppm Na2SeO4
PRJNA543957	SRX5879600	0.235727	Zhangzhou lvqing	stem		Mock2	mock
PRJNA543957	SRX5879601	0.409998	Zhangzhou lvqing	stem		Mock1	mock
PRJNA543957	SRX5879602	0.056345	Zhangzhou lvqing	stem		Se1	100 ppm Na2SeO4
PRJNA543957	SRX5879603	0	Zhangzhou lvqing	stem		Mock3	mock
PRJNA609149	SRX7815917	9.418168	Jinnan Shiqin	flower bud	early flower bud	early flower bud
PRJNA609149	SRX7815918	6.977353	Jinnan Shiqin	flower bud	middle flower bud	middle flower bud
PRJNA609149	SRX7815919	6.879426	Jinnan Shiqin	flower bud	early flowering period	early flowering period

Network

🔍 Co-expression Network

🔍 Protein-Protein Interaction Network

Orthology

Family	Species	Count	Orthologous Genes
Acanthaceae	Avicennia marina	4	jg16103, jg35255, jg37899, jg8839
Aizoaceae	Mesembryanthemum crystallinum	1	gene_5118
Amaranthaceae	Atriplex hortensis	1	Ah029678
Amaranthaceae	Beta vulgaris	2	BVRB_6g132370, BVRB_7g165870
Amaranthaceae	Salicornia bigelovii	2	Sbi_jg35796, Sbi_jg828
Amaranthaceae	Salicornia europaea	2	Seu_jg3898, Seu_jg9462
Amaranthaceae	Suaeda aralocaspica	1	GOSA_00028916
Amaranthaceae	Suaeda glauca	4	Sgl33483, Sgl38844, Sgl72051, Sgl75618
Amaranthaceae	Chenopodium album	3	gene:ENSEOMG00000005739, gene:ENSEOMG00000036944 ... gene:ENSEOMG00000043611
Amaranthaceae	Chenopodium quinoa	2	CQ.Regalona.r1.7AG0014890, CQ.Regalona.r1.7BG0016820
Apiaceae	Apium graveolens	2	Ag10G00771, Ag11G04063
Arecaceae	Cocos nucifera	6	COCNU_01G002800, COCNU_01G016960, COCNU_02G004950 ... COCNU_08G001450, COCNU_12G001530, scaffold145098G000010
Arecaceae	Phoenix dactylifera	5	gene-LOC103701872, gene-LOC103704410, gene-LOC103710946 ... gene-LOC103717236, gene-LOC103719689
Asparagaceae	Asparagus officinalis	1	AsparagusV1_01.3069.V1.1
Asteraceae	Flaveria trinervia	4	Ftri11G29589, Ftri12G02266, Ftri14G07878, Ftri9G06641
Brassicaceae	Arabidopsis thaliana	3	AT1G03440.1, AT3G17640.1, AT4G03010.1
Brassicaceae	Eutrema salsugineum	3	Thhalv10007833m.g.v1.0, Thhalv10022092m.g.v1.0 ... Thhalv10028712m.g.v1.0
Brassicaceae	Schrenkiella parvula	3	Sp1g02410.v2.2, Sp3g15770.v2.2, Sp6g03050.v2.2
Brassicaceae	Brassica nigra	5	BniB01g047180.2N, BniB03g000470.2N, BniB06g047380.2N ... BniB07g029560.2N, BniB08g045680.2N
Cymodoceaceae	Cymodocea nodosa	3	gene.Cymno02g01370, gene.Cymno03g13070, gene.Cymno04g05230
Dunaliellaceae	Dunaliella salina	1	Dusal.0027s00026.v1.0
Hydrocharitaceae	Thalassia testudinum	4	gene.Thate01g27260, gene.Thate02g01960, gene.Thate05g12690 ... gene.Thate07g03670
Malvaceae	Hibiscus hamabo Siebold & Zucc.	2	nbisL1-mrna-6290, nbisL1-mrna-9650
Nitrariaceae	Nitraria sibirica	2	evm.TU.LG01.1591, evm.TU.LG04.238
Plantaginaceae	Plantago ovata	3	Pov_00001308, Pov_00008161, Pov_00024804
Poaceae	Echinochloa crus-galli	12	AH02.2340, AH04.2075, AH06.926, BH01.4543, BH03.2940 ... BH04.2148, BH05.2588, CH01.4844, CH07.1102, CH07.442, CH09.1106, Contig80_1.2
Poaceae	Eleusine coracana subsp. coracana	6	gene-QOZ80_5AG0373560, gene-QOZ80_5BG0422690 ... gene-QOZ80_6AG0524790, gene-QOZ80_6BG0478460, gene-QOZ80_9AG0691030, gene-QOZ80_9BG0717320
Poaceae	Hordeum vulgare	3	HORVU.MOREX.r3.1HG0062740.1.CDS1 ... HORVU.MOREX.r3.4HG0362070.1.CDS1, HORVU.MOREX.r3.7HG0712740.1.CDS1
Poaceae	Lolium multiflorum	3	gene-QYE76_013332, gene-QYE76_033773, gene-QYE76_065835
Poaceae	Oryza coarctata	6	Oco09G009070, Oco10G009510, Oco11G009240, Oco12G009180 ... Oco21G009090, Oco22G010320
Poaceae	Oryza sativa	3	LOC_Os05g33690.3, LOC_Os06g28480.1, LOC_Os11g42450.1
Poaceae	Paspalum vaginatum	4	gene-BS78_03G368700, gene-BS78_05G226700 ... gene-BS78_09G141000, gene-BS78_10G272200
Poaceae	Puccinellia tenuiflora	2	Pt_Chr0400052, Pt_Chr0700039
Poaceae	Sporobolus alterniflorus	9	Chr01G020750, Chr10G005180, Chr11G013900, Chr12G017260 ... Chr16G004330, Chr17G003880, Chr18G008970, Chr21G008240, Chr22G008670
Poaceae	Thinopyrum elongatum	3	Tel1E01G422600, Tel4E01G235200, Tel7E01G592600
Poaceae	Triticum dicoccoides	7	gene_TRIDC1AG038080, gene_TRIDC1BG010210 ... gene_TRIDC1BG043040, gene_TRIDC4AG021990, gene_TRIDC7AG046820, gene_TRIDC7BG040910, gene_TRIDC7BG042860
Poaceae	Triticum aestivum	10	TraesCS1A02G254800.1.cds1, TraesCS1B02G263500.1.cds1 ... TraesCS1D02G254200.1.cds1, TraesCS4A02G145700.1.cds1, TraesCS4D02G149100.1, TraesCS7A02G337300.1.cds1, TraesCS7B02G248700.1.cds1, TraesCS7B02G262600.1.cds1, TraesCS7D02G344900.1.cds1, TraesCS7D02G357800.1.cds1
Poaceae	Zea mays	4	Zm00001eb117580_P001, Zm00001eb165940_P001 ... Zm00001eb297430_P001, Zm00001eb349640_P001
Poaceae	Zoysia japonica	8	nbis-gene-14457, nbis-gene-14458, nbis-gene-23827 ... nbis-gene-31764, nbis-gene-41868, nbis-gene-43594, nbis-gene-46049, nbis-gene-53562
Poaceae	Zoysia macrostachya	5	Zma_g19093, Zma_g26849, Zma_g28228, Zma_g29826, Zma_g32005
Portulacaceae	Portulaca oleracea	5	evm.TU.LG03.760, evm.TU.LG12.969, evm.TU.LG13.794 ... evm.TU.LG21.469, evm.TU.LG24.273
Posidoniaceae	Posidonia oceanica	3	gene.Posoc01g10750, gene.Posoc02g31930, gene.Posoc04g03070
Rhizophoraceae	Bruguiera sexangula	3	evm.TU.Scaffold_13_RagTag.3, evm.TU.Scaffold_5_RagTag.927 ... evm.TU.Scaffold_9_RagTag.876
Rhizophoraceae	Carallia pectinifolia	5	nbisL1-mrna-11412, nbisL1-mrna-16927, nbisL1-mrna-21348 ... nbisL1-mrna-31871, nbisL1-mrna-31874
Rhizophoraceae	Ceriops tagal	2	nbisL1-mrna-19925, nbisL1-mrna-7721
Rhizophoraceae	Ceriops zippeliana	3	nbisL1-mrna-11548, nbisL1-mrna-18430, nbisL1-mrna-20733
Rhizophoraceae	Kandelia candel	3	add.evm.TU.utg000003l.200, add.evm.TU.utg000006l.101 ... add.evm.TU.utg000015l.1
Rhizophoraceae	Kandelia obovata	2	Maker00009858, Maker00013837
Rhizophoraceae	Rhizophora apiculata	3	nbisL1-mrna-17327, nbisL1-mrna-19186, nbisL1-mrna-20726
Rhizophoraceae	Rhizophora mangle	3	nbisL1-mrna-23384, nbisL1-mrna-5181, nbisL1-mrna-7543
Salicaceae	Populus euphratica	3	populus_peu10435, populus_peu18407, populus_peu27184
Solanaceae	Lycium barbarum	3	gene-LOC132608257, gene-LOC132610765, gene-LOC132619015
Solanaceae	Solanum chilense	3	SOLCI001735800, SOLCI004729800, SOLCI004832100
Solanaceae	Solanum pennellii	3	gene-LOC107021167, gene-LOC107024176, gene-LOC107029604
Tamaricaceae	Reaumuria soongarica	2	gene_11062, gene_6267
Tamaricaceae	Tamarix chinensis	2	TC01G0310, TC04G0340
Zosteraceae	Zostera marina	5	Zosma01g13870.v3.1, Zosma01g20370.v3.1, Zosma01g22230.v3.1 ... Zosma03g01410.v3.1, Zosma06g06780.v3.1