Basic Information
Locus ID:
Ag11G04050
Species & Taxonomic ID:
Apium graveolens & 4045
Genome Assembly:
GCA_009905375.1
Description:
LRR receptor-like serine threonine-protein kinase
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr11 | 132783315 | 132785777 | - | Ag11G04050 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.26 | 68,186.98 Da | 38.62 | 91.70 | -0.15 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd14066 | STKc_IRAK | 295 | 564 | 1.72804E-93 | - |
| Pfam | PF00069 | Protein kinase domain | 290 | 560 | 5.2E-43 | IPR000719 |
| Pfam | PF19160 | SPARK | 21 | 158 | 4.2E-23 | IPR043891 |
| SUPERFAMILY | SSF56112 | Protein kinase-like (PK-like) | 273 | 593 | 1.12E-78 | IPR011009 |
| Gene3D | G3DSA:1.10.510.10 | Transferase(Phosphotransferase) domain 1 | 370 | 568 | 1.0E-58 | - |
| Gene3D | G3DSA:3.30.200.20 | Phosphorylase Kinase; domain 1 | 248 | 368 | 7.8E-30 | - |
| SMART | SM00220 | serkin_6 | 289 | 562 | 5.6E-32 | IPR000719 |
| ProSiteProfiles | PS50011 | Protein kinase domain profile. | 289 | 572 | 35.382362 | IPR000719 |
| ProSitePatterns | PS00108 | Serine/Threonine protein kinases active-site signature. | 414 | 426 | - | IPR008271 |
| ProSitePatterns | PS00107 | Protein kinases ATP-binding region signature. | 295 | 317 | - | IPR017441 |
Gene Ontology
Biological Process:
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT2G48010.1 | receptor-like kinase in in flowers 3. receptor-like serine/threonine kinase (RKF3) | 0 |
| RefSeq | XP_017236994.1 | PREDICTED: probable LRR receptor-like serine/threonine-protein kinase RKF3 [Daucus carota subsp. sativus] | 0 |
| P93050 | Probable LRR receptor-like serine/threonine-protein kinase RKF3 OS=Arabidopsis thaliana OX=3702 GN=RKF3 PE=2 SV=1 | 0 | |
| TrEMBL | A0A166DA62 | Protein kinase domain-containing protein OS=Daucus carota subsp. sativus OX=79200 GN=DCAR_005827 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| PRJNA723697 | SRX10692252 | 4.238611 | Shengqin NO.2 | seed | S1-1 | S1-1 | initial formation stage (S1) |
| PRJNA723697 | SRX10692254 | 3.885221 | Shengqin NO.2 | seed | S1-3 | S1-3 | initial formation stage (S1) |
| PRJNA723697 | SRX10692255 | 4.934731 | Shengqin NO.2 | seed | S3-1 | S3-1 | middle development stage (S3) |
| PRJNA723697 | SRX10692256 | 6.52019 | Shengqin NO.2 | seed | S3-2 | S3-2 | middle development stage (S3) |
| PRJNA723697 | SRX10692257 | 5.513063 | Shengqin NO.2 | seed | S3-3 | S3-3 | middle development stage (S3) |
| PRJNA723697 | SRX10692258 | 7.642886 | Shengqin NO.2 | seed | S5-1 | S5-1 | maturation stage (S5) |
| PRJNA723697 | SRX10692259 | 5.362858 | Shengqin NO.2 | seed | S5-2 | S5-2 | maturation stage (S5) |
| PRJNA723697 | SRX10692260 | 8.349284 | Shengqin NO.2 | seed | S5-3 | S5-3 | maturation stage (S5) |
| PRJNA884666 | SRX17729272 | 9.855172 | celery | anther | W99A-r1 | male sterile line | |
| PRJNA884666 | SRX17729273 | 10.05194 | celery | anther | W99A-r2 | male sterile line | |
| PRJNA884666 | SRX17729274 | 11.11344 | celery | anther | W99A-r3 | male sterile line | |
| PRJNA884666 | SRX17729275 | 9.246371 | celery | anther | W99B-r1 | maintainer line | |
| PRJNA884666 | SRX17729276 | 8.583674 | celery | anther | W99B-r2 | maintainer line | |
| PRJNA884666 | SRX17729277 | 7.129864 | celery | anther | W99B-r3 | maintainer line | |
| PRJNA884180 | SRX17743889 | 3.907597 | var. secalinum Yablochny | collenchyma | Col_S1_rep1-1 | ||
| PRJNA884180 | SRX17748056 | 4.336935 | var. secalinum Yablochny | collenchyma | Col_S1_rep3 | biological replicate 3 | |
| PRJNA884180 | SRX17748057 | 4.922879 | var. secalinum Yablochny | collenchyma | Col_S1_rep4 | biological replicate 4 | |
| PRJNA884180 | SRX17748678 | 7.106891 | var. secalinum Yablochny | parenchyma | Par_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17748679 | 5.893658 | var. secalinum Yablochny | parenchyma | Par_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17748680 | 7.335252 | var. secalinum Yablochny | parenchyma | Par_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17748681 | 7.998443 | var. secalinum Yablochny | parenchyma | Par_S1_rep4 | Biological replicate 4 | |
| PRJNA884180 | SRX17748898 | 6.339564 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17748899 | 6.865827 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17748900 | 4.902415 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17748901 | 8.828047 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep4 | Biological replicate 4 | |
| PRJNA884180 | SRX17749129 | 7.815391 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17749130 | 7.47672 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17749131 | 5.870428 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17749132 | 6.511651 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep4 | Biological replicate 4 | |
| PRJNA1124269 | SRX24936411 | 2.854158 | leaf | CK1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936412 | 2.720682 | leaf | CK2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936413 | 2.375257 | leaf | CK3 | replicate=biological replicate3 | ||
| PRJNA1124269 | SRX24936414 | 7.421918 | leaf | D1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936415 | 5.619904 | leaf | D2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936416 | 5.783195 | leaf | D3 | replicate=biological replicate3 | ||
| PRJNA1124269 | SRX24936417 | 5.069422 | leaf | MD1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936418 | 2.640984 | leaf | MD2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936419 | 3.649173 | leaf | MD3 | replicate=biological replicate3 | ||
| PRJNA387092 | SRX2833309 | 5.806504 | shanghaihuangxin | leaf | leaves between 0.5 and 1 cm in breadth, folded; | stage 2 | |
| PRJNA387092 | SRX2833321 | 5.424321 | shanghaihuangxin | leaf | leaves between 2and 2.5 cm in breadth, nearly unfolded, with clear stem exten-sion | stage 5 | |
| PRJNA387092 | SRX2833323 | 2.679508 | shanghaihuangxin | leaf | leaves >3 cm, unfolded, with clearstem extension | stage 7 | |
| PRJNA543957 | SRX5879598 | 17.245258 | Zhangzhou lvqing | stem | Se3 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879599 | 16.241484 | Zhangzhou lvqing | stem | Se2 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879600 | 21.67696 | Zhangzhou lvqing | stem | Mock2 | mock | |
| PRJNA543957 | SRX5879601 | 16.574852 | Zhangzhou lvqing | stem | Mock1 | mock | |
| PRJNA543957 | SRX5879602 | 19.011374 | Zhangzhou lvqing | stem | Se1 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879603 | 14.368796 | Zhangzhou lvqing | stem | Mock3 | mock | |
| PRJNA609149 | SRX7815917 | 5.047 | Jinnan Shiqin | flower bud | early flower bud | early flower bud | |
| PRJNA609149 | SRX7815918 | 5.234565 | Jinnan Shiqin | flower bud | middle flower bud | middle flower bud | |
| PRJNA609149 | SRX7815919 | 7.195421 | Jinnan Shiqin | flower bud | early flowering period | early flowering period |
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Acanthaceae | Avicennia marina | 1 | jg35260 |
| Aizoaceae | Mesembryanthemum crystallinum | 2 | gene_6253, gene_6254 |
| Amaranthaceae | Atriplex hortensis | 1 | Ah005097 |
| Amaranthaceae | Beta vulgaris | 1 | BVRB_4g073960 |
| Amaranthaceae | Salicornia bigelovii | 2 | Sbi_jg17764, Sbi_jg62422 |
| Amaranthaceae | Salicornia europaea | 1 | Seu_jg999 |
| Amaranthaceae | Suaeda aralocaspica | 1 | GOSA_00007232 |
| Amaranthaceae | Suaeda glauca | 2 | Sgl23933, Sgl29112 |
| Amaranthaceae | Chenopodium album | 3 | gene:ENSEOMG00000009565, gene:ENSEOMG00000027373 ... |
| Amaranthaceae | Chenopodium quinoa | 2 | CQ.Regalona.r1.4AG0002420, CQ.Regalona.r1.4BG0002500 |
| Anacardiaceae | Pistacia vera | 1 | pistato.v30011390 |
| Apiaceae | Apium graveolens | 6 | Ag11G04050, Ag2G02425, AgUnG00541, AgUnG00542, AgUnG00543 ... |
| Arecaceae | Cocos nucifera | 1 | COCNU_01G002830 |
| Arecaceae | Phoenix dactylifera | 1 | gene-LOC103707538 |
| Asparagaceae | Asparagus officinalis | 1 | AsparagusV1_02.2017.V1.1 |
| Asteraceae | Flaveria trinervia | 1 | Ftri10G25519 |
| Brassicaceae | Arabidopsis thaliana | 1 | AT2G48010.1 |
| Brassicaceae | Eutrema salsugineum | 1 | Thhalv10016382m.g.v1.0 |
| Brassicaceae | Schrenkiella parvula | 1 | Sp4g18630.v2.2 |
| Brassicaceae | Brassica nigra | 1 | BniB08g022920.2N |
| Casuarinaceae | Casuarina equisetifolia | 3 | Ceq01G0160, Ceq06G2147, Ceq06G2300 |
| Casuarinaceae | Casuarina glauca | 4 | Cgl01G0151, Cgl06G2261, Cgl06G2417, Cgl06G2418 |
| Nitrariaceae | Nitraria sibirica | 1 | evm.TU.LG04.234 |
| Plantaginaceae | Plantago ovata | 1 | Pov_00024798 |
| Plumbaginaceae | Limonium bicolor | 2 | Lb4G24546, Lb7G34609 |
| Poaceae | Echinochloa crus-galli | 1 | CH02.1987 |
| Poaceae | Eleusine coracana subsp. coracana | 2 | gene-QOZ80_1AG0017500, gene-QOZ80_1BG0066840 |
| Poaceae | Hordeum vulgare | 1 | HORVU.MOREX.r3.4HG0348910.1.CDS1 |
| Poaceae | Lolium multiflorum | 1 | gene-QYE76_043010 |
| Poaceae | Oryza coarctata | 2 | Oco01G010600, Oco02G011340 |
| Poaceae | Oryza sativa | 1 | LOC_Os01g28730.1 |
| Poaceae | Paspalum vaginatum | 1 | gene-BS78_K057300 |
| Poaceae | Puccinellia tenuiflora | 2 | Pt_Chr0301988, Pt_Chr0302012 |
| Poaceae | Sporobolus alterniflorus | 3 | Chr04G020450, Chr19G014270, Chr27G000900 |
| Poaceae | Thinopyrum elongatum | 1 | Tel4E01G175600 |
| Poaceae | Triticum dicoccoides | 2 | gene_TRIDC4AG032740, gene_TRIDC4BG017090 |
| Poaceae | Triticum aestivum | 3 | TraesCS4A02G205800.1.cds1, TraesCS4B02G109400.1 ... |
| Poaceae | Zea mays | 1 | Zm00001eb231410_P001 |
| Poaceae | Zoysia japonica | 1 | nbis-gene-21608 |
| Poaceae | Zoysia macrostachya | 2 | Zma_g10378, Zma_g10379 |
| Portulacaceae | Portulaca oleracea | 4 | evm.TU.LG03.754, evm.TU.LG03.757, evm.TU.LG12.972 ... |
| Posidoniaceae | Posidonia oceanica | 1 | gene.Posoc01g10890 |
| Rhizophoraceae | Bruguiera sexangula | 1 | evm.TU.Scaffold_9_RagTag.880 |
| Rhizophoraceae | Carallia pectinifolia | 1 | nbisL1-mrna-21343 |
| Rhizophoraceae | Ceriops tagal | 1 | nbisL1-mrna-19922 |
| Rhizophoraceae | Ceriops zippeliana | 2 | nbisL1-mrna-18427, nbisL1-mrna-7302 |
| Rhizophoraceae | Kandelia candel | 1 | add.evm.TU.utg000003l.199 |
| Rhizophoraceae | Rhizophora apiculata | 1 | nbisL1-mrna-17323 |
| Rhizophoraceae | Rhizophora mangle | 1 | nbisL1-mrna-5174 |
| Salicaceae | Populus euphratica | 4 | populus_peu13464, populus_peu15803, populus_peu27180 ... |
| Solanaceae | Lycium barbarum | 2 | gene-LOC132609687, gene-LOC132626815 |
| Solanaceae | Solanum chilense | 1 | SOLCI007222100 |
| Solanaceae | Solanum pennellii | 1 | gene-LOC107029409 |
| Tamaricaceae | Reaumuria soongarica | 1 | STRG.752_chr01_+ |
| Tamaricaceae | Tamarix chinensis | 1 | TC01G0309 |
| Zosteraceae | Zostera marina | 1 | Zosma01g20420.v3.1 |