Basic Information
Locus ID:
Ag11G04047
Species & Taxonomic ID:
Apium graveolens & 4045
Genome Assembly:
GCA_009905375.1
Description:
BSD domain-containing protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr11 | 131953356 | 131955052 | - | Ag11G04047 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 4.31 | 49,178.69 Da | 42.85 | 66.80 | -0.88 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF03909 | BSD domain | 180 | 237 | 9.2E-6 | IPR005607 |
| SUPERFAMILY | SSF140383 | BSD domain-like | 148 | 238 | 3.4E-12 | IPR035925 |
| Gene3D | G3DSA:1.10.3970.10 | BSD domain | 141 | 243 | 5.6E-14 | IPR035925 |
| SMART | SM00751 | wurzfinal6 | 180 | 233 | 8.4E-4 | IPR005607 |
| ProSiteProfiles | PS50858 | BSD domain profile. | 180 | 233 | 10.61712 | IPR005607 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 253 | 444 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 395 | 423 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 319 | 352 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 24 | 38 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 48 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 253 | 269 | - | - |
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G03350.1 | BSD domain-containing protein. | 0 |
| RefSeq | XP_017253486.1 | PREDICTED: protein DOS2-like isoform X1 [Daucus carota subsp. sativus] | 0 |
| TrEMBL | A0A161YIM0 | BSD domain-containing protein OS=Daucus carota subsp. sativus OX=79200 GN=DCAR_016344 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| PRJNA723697 | SRX10692252 | 27.909273 | Shengqin NO.2 | seed | S1-1 | S1-1 | initial formation stage (S1) |
| PRJNA723697 | SRX10692254 | 21.664684 | Shengqin NO.2 | seed | S1-3 | S1-3 | initial formation stage (S1) |
| PRJNA723697 | SRX10692255 | 31.946617 | Shengqin NO.2 | seed | S3-1 | S3-1 | middle development stage (S3) |
| PRJNA723697 | SRX10692256 | 31.575647 | Shengqin NO.2 | seed | S3-2 | S3-2 | middle development stage (S3) |
| PRJNA723697 | SRX10692257 | 29.365589 | Shengqin NO.2 | seed | S3-3 | S3-3 | middle development stage (S3) |
| PRJNA723697 | SRX10692258 | 23.565651 | Shengqin NO.2 | seed | S5-1 | S5-1 | maturation stage (S5) |
| PRJNA723697 | SRX10692259 | 26.655293 | Shengqin NO.2 | seed | S5-2 | S5-2 | maturation stage (S5) |
| PRJNA723697 | SRX10692260 | 24.135586 | Shengqin NO.2 | seed | S5-3 | S5-3 | maturation stage (S5) |
| PRJNA884666 | SRX17729272 | 23.09449 | celery | anther | W99A-r1 | male sterile line | |
| PRJNA884666 | SRX17729273 | 25.03796 | celery | anther | W99A-r2 | male sterile line | |
| PRJNA884666 | SRX17729274 | 24.495659 | celery | anther | W99A-r3 | male sterile line | |
| PRJNA884666 | SRX17729275 | 26.397102 | celery | anther | W99B-r1 | maintainer line | |
| PRJNA884666 | SRX17729276 | 24.844391 | celery | anther | W99B-r2 | maintainer line | |
| PRJNA884666 | SRX17729277 | 29.623152 | celery | anther | W99B-r3 | maintainer line | |
| PRJNA884180 | SRX17743889 | 23.196114 | var. secalinum Yablochny | collenchyma | Col_S1_rep1-1 | ||
| PRJNA884180 | SRX17748056 | 26.578287 | var. secalinum Yablochny | collenchyma | Col_S1_rep3 | biological replicate 3 | |
| PRJNA884180 | SRX17748057 | 23.780466 | var. secalinum Yablochny | collenchyma | Col_S1_rep4 | biological replicate 4 | |
| PRJNA884180 | SRX17748678 | 24.059771 | var. secalinum Yablochny | parenchyma | Par_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17748679 | 17.730482 | var. secalinum Yablochny | parenchyma | Par_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17748680 | 21.840485 | var. secalinum Yablochny | parenchyma | Par_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17748681 | 28.366768 | var. secalinum Yablochny | parenchyma | Par_S1_rep4 | Biological replicate 4 | |
| PRJNA884180 | SRX17748898 | 26.49333 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17748899 | 23.917536 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17748900 | 22.20574 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17748901 | 19.381241 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep4 | Biological replicate 4 | |
| PRJNA884180 | SRX17749129 | 26.432692 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17749130 | 25.305019 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17749131 | 18.672649 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17749132 | 23.827497 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep4 | Biological replicate 4 | |
| PRJNA1124269 | SRX24936411 | 7.43017 | leaf | CK1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936412 | 7.56123 | leaf | CK2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936413 | 9.586649 | leaf | CK3 | replicate=biological replicate3 | ||
| PRJNA1124269 | SRX24936414 | 23.861132 | leaf | D1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936415 | 17.331123 | leaf | D2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936416 | 26.428749 | leaf | D3 | replicate=biological replicate3 | ||
| PRJNA1124269 | SRX24936417 | 18.809925 | leaf | MD1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936418 | 11.726479 | leaf | MD2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936419 | 11.542835 | leaf | MD3 | replicate=biological replicate3 | ||
| PRJNA387092 | SRX2833309 | 13.863737 | shanghaihuangxin | leaf | leaves between 0.5 and 1 cm in breadth, folded; | stage 2 | |
| PRJNA387092 | SRX2833321 | 13.205427 | shanghaihuangxin | leaf | leaves between 2and 2.5 cm in breadth, nearly unfolded, with clear stem exten-sion | stage 5 | |
| PRJNA387092 | SRX2833323 | 9.182061 | shanghaihuangxin | leaf | leaves >3 cm, unfolded, with clearstem extension | stage 7 | |
| PRJNA543957 | SRX5879598 | 30.999352 | Zhangzhou lvqing | stem | Se3 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879599 | 26.088408 | Zhangzhou lvqing | stem | Se2 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879600 | 31.442801 | Zhangzhou lvqing | stem | Mock2 | mock | |
| PRJNA543957 | SRX5879601 | 30.123995 | Zhangzhou lvqing | stem | Mock1 | mock | |
| PRJNA543957 | SRX5879602 | 27.366259 | Zhangzhou lvqing | stem | Se1 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879603 | 41.505524 | Zhangzhou lvqing | stem | Mock3 | mock | |
| PRJNA609149 | SRX7815917 | 17.25976 | Jinnan Shiqin | flower bud | early flower bud | early flower bud | |
| PRJNA609149 | SRX7815918 | 20.180056 | Jinnan Shiqin | flower bud | middle flower bud | middle flower bud | |
| PRJNA609149 | SRX7815919 | 14.795192 | Jinnan Shiqin | flower bud | early flowering period | early flowering period |
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Acanthaceae | Avicennia marina | 4 | jg12495, jg27946, jg35264, jg37885 |
| Aizoaceae | Mesembryanthemum crystallinum | 2 | gene_21395, gene_26206 |
| Amaranthaceae | Atriplex hortensis | 1 | Ah006194 |
| Amaranthaceae | Beta vulgaris | 1 | BVRB_4g083720 |
| Amaranthaceae | Salicornia bigelovii | 1 | Sbi_jg16749 |
| Amaranthaceae | Salicornia europaea | 1 | Seu_jg23002 |
| Amaranthaceae | Suaeda aralocaspica | 1 | GOSA_00008170 |
| Amaranthaceae | Suaeda glauca | 2 | Sgl24891, Sgl30036 |
| Amaranthaceae | Chenopodium album | 3 | gene:ENSEOMG00000011428, gene:ENSEOMG00000030124 ... |
| Amaranthaceae | Chenopodium quinoa | 2 | CQ.Regalona.r1.4AG0010990, CQ.Regalona.r1.4BG0011180 |
| Anacardiaceae | Pistacia vera | 2 | pistato.v30083880, pistato.v30237950 |
| Apiaceae | Apium graveolens | 2 | Ag11G04047, Ag1G01918 |
| Arecaceae | Cocos nucifera | 2 | COCNU_01G017790, COCNU_04G007510 |
| Arecaceae | Phoenix dactylifera | 4 | gene-LOC103695672, gene-LOC103721001, gene-LOC103723005 ... |
| Asparagaceae | Asparagus officinalis | 4 | AsparagusV1_04.1112.V1.1, AsparagusV1_05.1051.V1.1 ... |
| Asteraceae | Flaveria trinervia | 3 | Ftri11G31879, Ftri12G08473, Ftri3G08167 |
| Brassicaceae | Arabidopsis thaliana | 2 | AT1G03350.1, AT4G13110.1 |
| Brassicaceae | Eutrema salsugineum | 2 | Thhalv10009692m.g.v1.0, Thhalv10025468m.g.v1.0 |
| Brassicaceae | Schrenkiella parvula | 2 | Sp1g02350.v2.2, Sp7g10530.v2.2 |
| Brassicaceae | Brassica nigra | 2 | BniB03g000450.2N, BniB06g047460.2N |
| Casuarinaceae | Casuarina equisetifolia | 1 | Ceq06G2162 |
| Cymodoceaceae | Cymodocea nodosa | 2 | gene.Cymno01g06750, gene.Cymno03g14050 |
| Dunaliellaceae | Dunaliella salina | 1 | Dusal.0095s00036.v1.0 |
| Hydrocharitaceae | Thalassia testudinum | 2 | gene.Thate05g00440, gene.Thate07g00080 |
| Malvaceae | Hibiscus hamabo Siebold & Zucc. | 2 | nbisL1-mrna-6296, nbisL1-mrna-9654 |
| Nitrariaceae | Nitraria sibirica | 2 | evm.TU.LG04.993, evm.TU.LG11.1415 |
| Plantaginaceae | Plantago ovata | 2 | Pov_00008135, Pov_00026251 |
| Plumbaginaceae | Limonium bicolor | 1 | Lb4G26065 |
| Poaceae | Echinochloa crus-galli | 6 | AH02.868, AH03.3906, AH06.427, BH02.1263, BH03.4195 ... |
| Poaceae | Eleusine coracana subsp. coracana | 4 | gene-QOZ80_1AG0004180, gene-QOZ80_1BG0052590 ... |
| Poaceae | Hordeum vulgare | 2 | HORVU.MOREX.r3.2HG0118810.1.CDS1 ... |
| Poaceae | Lolium multiflorum | 3 | gene-QYE76_004577, gene-QYE76_039190, gene-QYE76_052366 |
| Poaceae | Oryza coarctata | 4 | Oco01G007720, Oco02G008030, Oco13G014330, Oco14G015220 |
| Poaceae | Oryza sativa | 2 | LOC_Os01g16670.1, LOC_Os07g45310.1 |
| Poaceae | Paspalum vaginatum | 3 | gene-BS78_02G374300, gene-BS78_08G069700 ... |
| Poaceae | Puccinellia tenuiflora | 2 | Pt_Chr0603782, Pt_Chr0603863 |
| Poaceae | Sporobolus alterniflorus | 8 | Chr03G001330, Chr05G004630, Chr08G003790, Chr0G021260 ... |
| Poaceae | Thinopyrum elongatum | 2 | Tel2E01G284700, Tel3E01G321500 |
| Poaceae | Triticum dicoccoides | 4 | gene_TRIDC2AG017480, gene_TRIDC2BG021020 ... |
| Poaceae | Triticum aestivum | 6 | TraesCS2A02G140100.1.cds1, TraesCS2B02G164200.1.cds1 ... |
| Poaceae | Zea mays | 8 | Zm00001eb128590_P001, Zm00001eb236190_P001 ... |
| Poaceae | Zoysia japonica | 3 | nbis-gene-219, nbis-gene-24502, nbis-gene-33139 |
| Poaceae | Zoysia macrostachya | 3 | Zma_g5690, Zma_g6977, Zma_g9680 |
| Portulacaceae | Portulaca oleracea | 2 | evm.TU.LG07.1775, evm.TU.LG15.1403 |
| Posidoniaceae | Posidonia oceanica | 1 | gene.Posoc02g34680 |
| Rhizophoraceae | Bruguiera sexangula | 3 | evm.TU.Scaffold_3_RagTag.505, evm.TU.Scaffold_5_RagTag.939 ... |
| Rhizophoraceae | Carallia pectinifolia | 3 | nbisL1-mrna-11402, nbisL1-mrna-1457, nbisL1-mrna-21334 |
| Rhizophoraceae | Ceriops tagal | 3 | nbisL1-mrna-4423, nbisL1-mrna-7223, nbisL1-mrna-7711 |
| Rhizophoraceae | Ceriops zippeliana | 4 | nbisL1-mrna-11556, nbisL1-mrna-18418, nbisL1-mrna-564 ... |
| Rhizophoraceae | Kandelia candel | 3 | add.evm.TU.utg000003l.196, add.evm.TU.utg000006l.105 ... |
| Rhizophoraceae | Kandelia obovata | 3 | Maker00009194, Maker00012868, Maker00013205 |
| Rhizophoraceae | Rhizophora apiculata | 3 | nbisL1-mrna-17318, nbisL1-mrna-19303, nbisL1-mrna-20723 |
| Rhizophoraceae | Rhizophora mangle | 3 | nbisL1-mrna-2067, nbisL1-mrna-5166, nbisL1-mrna-7559 |
| Salicaceae | Populus euphratica | 4 | populus_peu07834, populus_peu07835, populus_peu22016 ... |
| Solanaceae | Lycium barbarum | 2 | gene-LOC132609615, gene-LOC132645023 |
| Solanaceae | Solanum chilense | 2 | SOLCI000747400, SOLCI005396700 |
| Solanaceae | Solanum pennellii | 2 | gene-LOC107009001, gene-LOC107031356 |
| Tamaricaceae | Reaumuria soongarica | 1 | gene_6459 |
| Tamaricaceae | Tamarix chinensis | 1 | TC01G1376 |
| Zosteraceae | Zostera marina | 1 | Zosma04g26930.v3.1 |