Basic Information
Locus ID:
Ag11G03977
Species & Taxonomic ID:
Apium graveolens & 4045
Genome Assembly:
GCA_009905375.1
Description:
Suppressor of mec-8 and unc-52 protein homolog
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr11 | 119965012 | 119976199 | + | Ag11G03977 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 7.06 | 58,022.69 Da | 47.98 | 82.07 | -0.36 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd00200 | WD40 | 219 | 512 | 5.56285E-62 | - |
| Pfam | PF00400 | WD domain, G-beta repeat | 217 | 242 | 4.8E-5 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 339 | 377 | 2.1E-6 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 297 | 333 | 5.1E-4 | IPR001680 |
| Pfam | PF17814 | LisH-like dimerisation domain | 8 | 37 | 1.3E-15 | - |
| Pfam | PF00400 | WD domain, G-beta repeat | 263 | 291 | 4.4E-6 | IPR001680 |
| SUPERFAMILY | SSF50978 | WD40 repeat-like | 211 | 512 | 3.66E-70 | IPR036322 |
| Gene3D | G3DSA:2.130.10.10 | - | 192 | 513 | 2.7E-73 | IPR015943 |
| SMART | SM00320 | WD40_4 | 428 | 470 | 9.2 | IPR001680 |
| SMART | SM00320 | WD40_4 | 338 | 377 | 5.9E-10 | IPR001680 |
| SMART | SM00668 | ctlh | 41 | 93 | 0.0069 | IPR006595 |
| SMART | SM00320 | WD40_4 | 202 | 242 | 3.1E-5 | IPR001680 |
| SMART | SM00320 | WD40_4 | 253 | 292 | 1.8E-8 | IPR001680 |
| SMART | SM00320 | WD40_4 | 295 | 335 | 8.9E-7 | IPR001680 |
| SMART | SM00320 | WD40_4 | 380 | 426 | 25.0 | IPR001680 |
| SMART | SM00667 | Lish | 7 | 39 | 7.0E-5 | IPR006594 |
| SMART | SM00320 | WD40_4 | 473 | 512 | 0.011 | IPR001680 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 303 | 344 | 10.307941 | IPR001680 |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 260 | 295 | 12.288313 | - |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 260 | 301 | 16.055872 | IPR001680 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 480 | 513 | 10.34136 | IPR001680 |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 345 | 380 | 11.73468 | - |
| ProSiteProfiles | PS50897 | C-terminal to LisH (CTLH) motif profile. | 41 | 93 | 9.118538 | IPR006595 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 222 | 242 | 10.241105 | IPR001680 |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 480 | 513 | 10.021053 | - |
| ProSiteProfiles | PS50896 | LIS1 homology (LisH) motif profile. | 7 | 39 | 10.05014 | IPR006594 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 345 | 386 | 15.387508 | IPR001680 |
| ProSitePatterns | PS00678 | Trp-Asp (WD) repeats signature. | 364 | 378 | - | IPR019775 |
| PRINTS | PR00320 | G protein beta WD-40 repeat signature | 364 | 378 | 4.5E-6 | IPR020472 |
| PRINTS | PR00320 | G protein beta WD-40 repeat signature | 229 | 243 | 4.5E-6 | IPR020472 |
| PRINTS | PR00320 | G protein beta WD-40 repeat signature | 279 | 293 | 4.5E-6 | IPR020472 |
| Coils | Coil | Coil | 71 | 91 | - | - |
Gene Ontology
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G73720.1 | transducin family protein / WD-40 repeat family protein. Encodes SMU1, a protein involved in RNA splicing. | 0 |
| RefSeq | XP_017237082.1 | PREDICTED: suppressor of mec-8 and unc-52 protein homolog 1 [Daucus carota subsp. sativus] | 0 |
| Q8W117 | Suppressor of mec-8 and unc-52 protein homolog 1 OS=Arabidopsis thaliana OX=3702 GN=SMU1 PE=1 SV=1 | 0 | |
| TrEMBL | A0A169WQ56 | WD40 repeat-containing protein SMU1 OS=Daucus carota subsp. sativus OX=79200 GN=DCAR_005757 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| PRJNA723697 | SRX10692252 | 46.001648 | Shengqin NO.2 | seed | S1-1 | S1-1 | initial formation stage (S1) |
| PRJNA723697 | SRX10692254 | 34.527992 | Shengqin NO.2 | seed | S1-3 | S1-3 | initial formation stage (S1) |
| PRJNA723697 | SRX10692255 | 34.078804 | Shengqin NO.2 | seed | S3-1 | S3-1 | middle development stage (S3) |
| PRJNA723697 | SRX10692256 | 35.073723 | Shengqin NO.2 | seed | S3-2 | S3-2 | middle development stage (S3) |
| PRJNA723697 | SRX10692257 | 33.506924 | Shengqin NO.2 | seed | S3-3 | S3-3 | middle development stage (S3) |
| PRJNA723697 | SRX10692258 | 33.922707 | Shengqin NO.2 | seed | S5-1 | S5-1 | maturation stage (S5) |
| PRJNA723697 | SRX10692259 | 35.909969 | Shengqin NO.2 | seed | S5-2 | S5-2 | maturation stage (S5) |
| PRJNA723697 | SRX10692260 | 30.017069 | Shengqin NO.2 | seed | S5-3 | S5-3 | maturation stage (S5) |
| PRJNA884666 | SRX17729272 | 55.797642 | celery | anther | W99A-r1 | male sterile line | |
| PRJNA884666 | SRX17729273 | 61.636608 | celery | anther | W99A-r2 | male sterile line | |
| PRJNA884666 | SRX17729274 | 62.393234 | celery | anther | W99A-r3 | male sterile line | |
| PRJNA884666 | SRX17729275 | 66.744278 | celery | anther | W99B-r1 | maintainer line | |
| PRJNA884666 | SRX17729276 | 57.722309 | celery | anther | W99B-r2 | maintainer line | |
| PRJNA884666 | SRX17729277 | 57.005371 | celery | anther | W99B-r3 | maintainer line | |
| PRJNA884180 | SRX17743889 | 21.625916 | var. secalinum Yablochny | collenchyma | Col_S1_rep1-1 | ||
| PRJNA884180 | SRX17748056 | 22.750509 | var. secalinum Yablochny | collenchyma | Col_S1_rep3 | biological replicate 3 | |
| PRJNA884180 | SRX17748057 | 26.098923 | var. secalinum Yablochny | collenchyma | Col_S1_rep4 | biological replicate 4 | |
| PRJNA884180 | SRX17748678 | 29.005713 | var. secalinum Yablochny | parenchyma | Par_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17748679 | 25.127438 | var. secalinum Yablochny | parenchyma | Par_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17748680 | 24.965647 | var. secalinum Yablochny | parenchyma | Par_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17748681 | 26.643673 | var. secalinum Yablochny | parenchyma | Par_S1_rep4 | Biological replicate 4 | |
| PRJNA884180 | SRX17748898 | 34.154121 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17748899 | 34.875385 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17748900 | 35.679855 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17748901 | 33.002579 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep4 | Biological replicate 4 | |
| PRJNA884180 | SRX17749129 | 29.091669 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17749130 | 22.666023 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17749131 | 25.379114 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17749132 | 31.717607 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep4 | Biological replicate 4 | |
| PRJNA1124269 | SRX24936411 | 13.783072 | leaf | CK1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936412 | 20.727642 | leaf | CK2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936413 | 14.684719 | leaf | CK3 | replicate=biological replicate3 | ||
| PRJNA1124269 | SRX24936414 | 19.921782 | leaf | D1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936415 | 24.438787 | leaf | D2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936416 | 17.87179 | leaf | D3 | replicate=biological replicate3 | ||
| PRJNA1124269 | SRX24936417 | 14.909591 | leaf | MD1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936418 | 12.490787 | leaf | MD2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936419 | 13.008902 | leaf | MD3 | replicate=biological replicate3 | ||
| PRJNA387092 | SRX2833309 | 36.548935 | shanghaihuangxin | leaf | leaves between 0.5 and 1 cm in breadth, folded; | stage 2 | |
| PRJNA387092 | SRX2833321 | 17.471748 | shanghaihuangxin | leaf | leaves between 2and 2.5 cm in breadth, nearly unfolded, with clear stem exten-sion | stage 5 | |
| PRJNA387092 | SRX2833323 | 15.269859 | shanghaihuangxin | leaf | leaves >3 cm, unfolded, with clearstem extension | stage 7 | |
| PRJNA543957 | SRX5879598 | 23.059906 | Zhangzhou lvqing | stem | Se3 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879599 | 27.60622 | Zhangzhou lvqing | stem | Se2 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879600 | 43.094856 | Zhangzhou lvqing | stem | Mock2 | mock | |
| PRJNA543957 | SRX5879601 | 34.481079 | Zhangzhou lvqing | stem | Mock1 | mock | |
| PRJNA543957 | SRX5879602 | 28.829639 | Zhangzhou lvqing | stem | Se1 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879603 | 29.222839 | Zhangzhou lvqing | stem | Mock3 | mock | |
| PRJNA609149 | SRX7815917 | 57.214832 | Jinnan Shiqin | flower bud | early flower bud | early flower bud | |
| PRJNA609149 | SRX7815918 | 59.905102 | Jinnan Shiqin | flower bud | middle flower bud | middle flower bud | |
| PRJNA609149 | SRX7815919 | 52.06144 | Jinnan Shiqin | flower bud | early flowering period | early flowering period |
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Acanthaceae | Avicennia marina | 2 | jg12253, jg23304 |
| Aizoaceae | Mesembryanthemum crystallinum | 1 | gene_10305 |
| Amaranthaceae | Atriplex hortensis | 1 | Ah005479 |
| Amaranthaceae | Beta vulgaris | 1 | BVRB_4g078600 |
| Amaranthaceae | Salicornia bigelovii | 2 | Sbi_jg17694, Sbi_jg62366 |
| Amaranthaceae | Salicornia europaea | 1 | Seu_jg936 |
| Amaranthaceae | Suaeda aralocaspica | 1 | GOSA_00007292 |
| Amaranthaceae | Suaeda glauca | 2 | Sgl23991, Sgl29170 |
| Amaranthaceae | Chenopodium album | 3 | gene:ENSEOMG00000009338, gene:ENSEOMG00000030219 ... |
| Amaranthaceae | Chenopodium quinoa | 2 | CQ.Regalona.r1.4AG0005720, CQ.Regalona.r1.4BG0005830 |
| Anacardiaceae | Pistacia vera | 1 | pistato.v30243340 |
| Apiaceae | Apium graveolens | 1 | Ag11G03977 |
| Arecaceae | Cocos nucifera | 1 | scaffold004145G000020 |
| Arecaceae | Phoenix dactylifera | 1 | gene-LOC103718159 |
| Asparagaceae | Asparagus officinalis | 3 | AsparagusV1_05.222.V1.1, AsparagusV1_07.1097.V1.1 ... |
| Asteraceae | Flaveria trinervia | 2 | Ftri18G14775, Ftri1G00515 |
| Brassicaceae | Arabidopsis thaliana | 1 | AT1G73720.1 |
| Brassicaceae | Eutrema salsugineum | 1 | Thhalv10018372m.g.v1.0 |
| Brassicaceae | Schrenkiella parvula | 1 | Sp5g28910.v2.2 |
| Brassicaceae | Brassica nigra | 2 | BniB03g038750.2N, BniB03g052110.2N |
| Casuarinaceae | Casuarina equisetifolia | 1 | Ceq02G1698 |
| Casuarinaceae | Casuarina glauca | 1 | Cgl02G1761 |
| Cymodoceaceae | Cymodocea nodosa | 1 | gene.Cymno15g05250 |
| Dunaliellaceae | Dunaliella salina | 1 | Dusal.0066s00003.v1.0 |
| Hydrocharitaceae | Thalassia testudinum | 1 | gene.Thate09g02690 |
| Nitrariaceae | Nitraria sibirica | 1 | evm.TU.LG06.1168 |
| Plantaginaceae | Plantago ovata | 1 | Pov_00037590 |
| Plumbaginaceae | Limonium bicolor | 2 | Lb0G37478, Lb5G29337 |
| Poaceae | Echinochloa crus-galli | 3 | AH02.1501, BH02.1576, CH02.1723 |
| Poaceae | Eleusine coracana subsp. coracana | 2 | gene-QOZ80_1AG0015150, gene-QOZ80_1BG0064020 |
| Poaceae | Hordeum vulgare | 1 | HORVU.MOREX.r3.3HG0259260.2 |
| Poaceae | Lolium multiflorum | 1 | gene-QYE76_052755 |
| Poaceae | Oryza coarctata | 2 | Oco01G009310, Oco02G009600 |
| Poaceae | Oryza sativa | 1 | LOC_Os01g21940.1 |
| Poaceae | Paspalum vaginatum | 1 | gene-BS78_03G140200 |
| Poaceae | Puccinellia tenuiflora | 4 | Pt_Chr0603582, Pt_Chr0603668, Pt_Chr0603671, Pt_Chr0603674 |
| Poaceae | Sporobolus alterniflorus | 5 | Chr02G022330, Chr03G007550, Chr05G013260, Chr06G021250 ... |
| Poaceae | Thinopyrum elongatum | 1 | Tel3E01G332200 |
| Poaceae | Triticum dicoccoides | 2 | gene_TRIDC3AG028410, gene_TRIDC3BG033020 |
| Poaceae | Triticum aestivum | 3 | TraesCS3A02G197200.1, TraesCS3B02G226600.1 ... |
| Poaceae | Zea mays | 1 | Zm00001eb130810_P002 |
| Poaceae | Zoysia japonica | 1 | nbis-gene-6511 |
| Poaceae | Zoysia macrostachya | 1 | Zma_g10245 |
| Portulacaceae | Portulaca oleracea | 2 | evm.TU.LG08.1204, evm.TU.LG22.119 |
| Posidoniaceae | Posidonia oceanica | 1 | gene.Posoc07g10480 |
| Rhizophoraceae | Bruguiera sexangula | 1 | evm.TU.Scaffold_14_RagTag.993 |
| Rhizophoraceae | Carallia pectinifolia | 1 | nbisL1-mrna-16841 |
| Rhizophoraceae | Ceriops tagal | 1 | nbisL1-mrna-13062 |
| Rhizophoraceae | Ceriops zippeliana | 1 | nbisL1-mrna-17288 |
| Rhizophoraceae | Kandelia candel | 1 | evm.TU.utg000025l.144 |
| Rhizophoraceae | Kandelia obovata | 1 | Maker00012218 |
| Rhizophoraceae | Rhizophora apiculata | 1 | nbisL1-mrna-8617 |
| Rhizophoraceae | Rhizophora mangle | 1 | nbisL1-mrna-22994 |
| Salicaceae | Populus euphratica | 2 | populus_peu00119, populus_peu17184 |
| Solanaceae | Lycium barbarum | 1 | gene-LOC132644465 |
| Solanaceae | Solanum chilense | 1 | SOLCI006452900 |
| Solanaceae | Solanum pennellii | 1 | gene-LOC107023840 |
| Tamaricaceae | Reaumuria soongarica | 1 | gene_17016 |
| Tamaricaceae | Tamarix chinensis | 1 | TC02G1491 |
| Zosteraceae | Zostera marina | 1 | Zosma01g39070.v3.1 |