Basic Information
Locus ID:
Ag11G03959
Species & Taxonomic ID:
Apium graveolens & 4045
Genome Assembly:
GCA_009905375.1
Description:
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr11 | 114394660 | 114395634 | + | Ag11G03959 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.43 | 36,263.17 Da | 47.66 | 66.20 | -0.86 |
Protein Domain:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G16770.1 | 0 | |
| RefSeq | XP_017232795.1 | PREDICTED: uncharacterized protein LOC108206876 [Daucus carota subsp. sativus] | 0 |
| TrEMBL | A0A169WP98 | DUF2431 domain-containing protein OS=Daucus carota subsp. sativus OX=79200 GN=DCAR_005735 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| PRJNA723697 | SRX10692252 | 120.226501 | Shengqin NO.2 | seed | S1-1 | S1-1 | initial formation stage (S1) |
| PRJNA723697 | SRX10692254 | 58.562214 | Shengqin NO.2 | seed | S1-3 | S1-3 | initial formation stage (S1) |
| PRJNA723697 | SRX10692255 | 127.432632 | Shengqin NO.2 | seed | S3-1 | S3-1 | middle development stage (S3) |
| PRJNA723697 | SRX10692256 | 99.854149 | Shengqin NO.2 | seed | S3-2 | S3-2 | middle development stage (S3) |
| PRJNA723697 | SRX10692257 | 95.889374 | Shengqin NO.2 | seed | S3-3 | S3-3 | middle development stage (S3) |
| PRJNA723697 | SRX10692258 | 223.778564 | Shengqin NO.2 | seed | S5-1 | S5-1 | maturation stage (S5) |
| PRJNA723697 | SRX10692259 | 216.465591 | Shengqin NO.2 | seed | S5-2 | S5-2 | maturation stage (S5) |
| PRJNA723697 | SRX10692260 | 233.559723 | Shengqin NO.2 | seed | S5-3 | S5-3 | maturation stage (S5) |
| PRJNA884666 | SRX17729272 | 0.444653 | celery | anther | W99A-r1 | male sterile line | |
| PRJNA884666 | SRX17729273 | 0.299324 | celery | anther | W99A-r2 | male sterile line | |
| PRJNA884666 | SRX17729274 | 0.537437 | celery | anther | W99A-r3 | male sterile line | |
| PRJNA884666 | SRX17729275 | 4.020722 | celery | anther | W99B-r1 | maintainer line | |
| PRJNA884666 | SRX17729276 | 2.59412 | celery | anther | W99B-r2 | maintainer line | |
| PRJNA884666 | SRX17729277 | 1.737691 | celery | anther | W99B-r3 | maintainer line | |
| PRJNA884180 | SRX17743889 | 0.049897 | var. secalinum Yablochny | collenchyma | Col_S1_rep1-1 | ||
| PRJNA884180 | SRX17748056 | 0.644814 | var. secalinum Yablochny | collenchyma | Col_S1_rep3 | biological replicate 3 | |
| PRJNA884180 | SRX17748057 | 0.044367 | var. secalinum Yablochny | collenchyma | Col_S1_rep4 | biological replicate 4 | |
| PRJNA884180 | SRX17748678 | 1.229377 | var. secalinum Yablochny | parenchyma | Par_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17748679 | 2.93257 | var. secalinum Yablochny | parenchyma | Par_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17748680 | 0.968031 | var. secalinum Yablochny | parenchyma | Par_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17748681 | 0.729255 | var. secalinum Yablochny | parenchyma | Par_S1_rep4 | Biological replicate 4 | |
| PRJNA884180 | SRX17748898 | 0.652137 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17748899 | 0.314519 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17748900 | 1.003277 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17748901 | 0.290793 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep4 | Biological replicate 4 | |
| PRJNA884180 | SRX17749129 | 1.856072 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17749130 | 2.590926 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17749131 | 0.672453 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17749132 | 1.270078 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep4 | Biological replicate 4 | |
| PRJNA1124269 | SRX24936411 | 0 | leaf | CK1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936412 | 0 | leaf | CK2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936413 | 0 | leaf | CK3 | replicate=biological replicate3 | ||
| PRJNA1124269 | SRX24936414 | 2.213184 | leaf | D1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936415 | 3.816268 | leaf | D2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936416 | 1.37975 | leaf | D3 | replicate=biological replicate3 | ||
| PRJNA1124269 | SRX24936417 | 0.475776 | leaf | MD1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936418 | 1.261664 | leaf | MD2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936419 | 0.226461 | leaf | MD3 | replicate=biological replicate3 | ||
| PRJNA387092 | SRX2833309 | 0 | shanghaihuangxin | leaf | leaves between 0.5 and 1 cm in breadth, folded; | stage 2 | |
| PRJNA387092 | SRX2833321 | 0 | shanghaihuangxin | leaf | leaves between 2and 2.5 cm in breadth, nearly unfolded, with clear stem exten-sion | stage 5 | |
| PRJNA387092 | SRX2833323 | 0.058648 | shanghaihuangxin | leaf | leaves >3 cm, unfolded, with clearstem extension | stage 7 | |
| PRJNA543957 | SRX5879598 | 0.089924 | Zhangzhou lvqing | stem | Se3 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879599 | 0.894926 | Zhangzhou lvqing | stem | Se2 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879600 | 0.373026 | Zhangzhou lvqing | stem | Mock2 | mock | |
| PRJNA543957 | SRX5879601 | 0.088787 | Zhangzhou lvqing | stem | Mock1 | mock | |
| PRJNA543957 | SRX5879602 | 0.084385 | Zhangzhou lvqing | stem | Se1 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879603 | 0.122559 | Zhangzhou lvqing | stem | Mock3 | mock | |
| PRJNA609149 | SRX7815917 | 1.802644 | Jinnan Shiqin | flower bud | early flower bud | early flower bud | |
| PRJNA609149 | SRX7815918 | 1.704036 | Jinnan Shiqin | flower bud | middle flower bud | middle flower bud | |
| PRJNA609149 | SRX7815919 | 0.458827 | Jinnan Shiqin | flower bud | early flowering period | early flowering period |
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Aizoaceae | Mesembryanthemum crystallinum | 1 | gene_5501 |
| Amaranthaceae | Atriplex hortensis | 1 | Ah028579 |
| Amaranthaceae | Salicornia bigelovii | 3 | Sbi_jg26779, Sbi_jg26780, Sbi_jg33787 |
| Amaranthaceae | Salicornia europaea | 1 | Seu_jg8479 |
| Amaranthaceae | Suaeda aralocaspica | 1 | GOSA_00011717 |
| Amaranthaceae | Suaeda glauca | 2 | Sgl73636, Sgl77100 |
| Amaranthaceae | Chenopodium album | 3 | gene:ENSEOMG00000007632, gene:ENSEOMG00000034489 ... |
| Amaranthaceae | Chenopodium quinoa | 2 | CQ.Regalona.r1.7AG0007860, CQ.Regalona.r1.9BG0008150 |
| Anacardiaceae | Pistacia vera | 2 | pistato.v30028380, pistato.v30132220 |
| Apiaceae | Apium graveolens | 2 | Ag11G03959, Ag3G02673 |
| Arecaceae | Cocos nucifera | 1 | COCNU_02G019770 |
| Arecaceae | Phoenix dactylifera | 1 | gene-LOC103713130 |
| Asparagaceae | Asparagus officinalis | 1 | AsparagusV1_01.3547.V1.1 |
| Asteraceae | Flaveria trinervia | 1 | Ftri1G34104 |
| Brassicaceae | Arabidopsis thaliana | 1 | AT1G16770.1 |
| Brassicaceae | Eutrema salsugineum | 1 | Thhalv10009697m.g.v1.0 |
| Brassicaceae | Schrenkiella parvula | 1 | Sp1g14920.v2.2 |
| Brassicaceae | Brassica nigra | 1 | BniB03g006770.2N |
| Casuarinaceae | Casuarina equisetifolia | 1 | Ceq02G1060 |
| Casuarinaceae | Casuarina glauca | 1 | Cgl02G1102 |
| Dunaliellaceae | Dunaliella salina | 2 | Dusal.0064s00016.v1.0, Dusal.0064s00017.v1.0 |
| Nitrariaceae | Nitraria sibirica | 1 | evm.TU.LG01.619 |
| Plantaginaceae | Plantago ovata | 1 | Pov_00019873 |
| Plumbaginaceae | Limonium bicolor | 1 | Lb2G15469 |
| Poaceae | Echinochloa crus-galli | 4 | AH01.3419, BH01.3772, BH07.4227, CH01.4022 |
| Poaceae | Eleusine coracana subsp. coracana | 2 | gene-QOZ80_2AG0101380, gene-QOZ80_2BG0154720 |
| Poaceae | Hordeum vulgare | 1 | HORVU.MOREX.r3.6HG0557570.1 |
| Poaceae | Oryza coarctata | 2 | Oco03G002240, Oco04G002170 |
| Poaceae | Oryza sativa | 1 | LOC_Os02g04780.1 |
| Poaceae | Paspalum vaginatum | 1 | gene-BS78_08G150900 |
| Poaceae | Puccinellia tenuiflora | 1 | Pt_Chr0207623 |
| Poaceae | Thinopyrum elongatum | 1 | Tel6E01G245600 |
| Poaceae | Triticum dicoccoides | 2 | gene_TRIDC6AG014660, gene_TRIDC6BG020030 |
| Poaceae | Triticum aestivum | 3 | TraesCS6A02G111700.1, TraesCS6B02G139800.1 ... |
| Poaceae | Zea mays | 1 | Zm00001eb328020_P001 |
| Poaceae | Zoysia japonica | 1 | nbis-gene-33751 |
| Poaceae | Zoysia macrostachya | 1 | Zma_g12181 |
| Portulacaceae | Portulaca oleracea | 2 | evm.TU.LG03.1224, evm.TU.LG12.562 |
| Rhizophoraceae | Carallia pectinifolia | 1 | nbisL1-mrna-10255 |
| Rhizophoraceae | Ceriops tagal | 1 | nbisL1-mrna-13119 |
| Rhizophoraceae | Ceriops zippeliana | 1 | nbisL1-mrna-17767 |
| Rhizophoraceae | Kandelia candel | 1 | evm.TU.utg000018l.924 |
| Rhizophoraceae | Rhizophora apiculata | 1 | nbisL1-mrna-3085 |
| Rhizophoraceae | Rhizophora mangle | 1 | nbisL1-mrna-11479 |
| Solanaceae | Lycium barbarum | 1 | gene-LOC132632699 |
| Solanaceae | Solanum chilense | 1 | SOLCI001789200 |
| Solanaceae | Solanum pennellii | 1 | gene-LOC107013812 |
| Tamaricaceae | Reaumuria soongarica | 1 | gene_4393 |